Query gi|254780775|ref|YP_003065188.1| undecaprenyl diphosphate synthase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 243 No_of_seqs 140 out of 2926 Neff 6.6 Searched_HMMs 13730 Date Wed Jun 1 08:26:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780775.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1ueha_ c.101.1.1 (A:) Undecap 100.0 0 0 619.7 22.9 228 6-233 1-228 (228) 2 d1f75a_ c.101.1.1 (A:) Undecap 100.0 0 0 618.1 21.5 228 5-232 2-229 (229) 3 d1i60a_ c.1.15.4 (A:) Hypothet 86.1 1.1 8.3E-05 22.5 6.5 67 32-102 75-141 (278) 4 d1hl2a_ c.1.10.1 (A:) N-acetyl 70.0 3.6 0.00026 19.4 9.9 105 40-156 22-128 (295) 5 d2j9ga2 c.30.1.1 (A:1-114) Bio 33.4 14 0.001 15.5 3.2 21 41-61 12-32 (114) 6 d1xkya1 c.1.10.1 (A:1-292) Dih 32.1 15 0.0011 15.4 9.8 104 40-155 23-128 (292) 7 d2p6va1 a.277.1.1 (A:582-678) 31.7 15 0.0011 15.3 2.7 44 139-185 29-72 (97) 8 d1ulza2 c.30.1.1 (A:1-114) Bio 30.9 16 0.0011 15.2 3.3 21 41-61 12-32 (114) 9 d1xxxa1 c.1.10.1 (A:5-300) Dih 30.1 16 0.0012 15.1 9.9 104 40-155 27-132 (296) 10 d1fvpa_ c.1.16.2 (A:) Non-fluo 26.7 19 0.0014 14.8 2.4 139 9-156 69-222 (231) 11 d1vk1a_ d.268.1.2 (A:) Hypothe 26.0 8.7 0.00063 16.9 0.6 26 16-64 56-81 (232) 12 d1yr0a1 d.108.1.1 (A:4-166) Ph 24.1 21 0.0015 14.5 2.7 25 131-155 85-109 (163) 13 d1xhoa_ d.79.1.2 (A:) Chorisma 23.8 21 0.0015 14.4 3.2 37 134-170 8-45 (112) 14 d2ge3a1 d.108.1.1 (A:6-169) Pr 23.3 22 0.0016 14.4 2.7 10 133-142 87-96 (164) 15 d1qsra_ d.108.1.1 (A:) Catalyt 23.2 22 0.0016 14.4 2.5 32 31-62 82-113 (162) No 1 >d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=619.75 Aligned_cols=228 Identities=37% Similarity=0.679 Sum_probs=224.9 Q ss_pred CCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 06898826999848851899975998779899999999999999997698689997202336532301248888988863 Q gi|254780775|r 6 MSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSF 85 (243) Q Consensus 6 ~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~ 85 (243) +|+..|+|||||||||||||+++|++..+||++|++++.++++||.++||++|||||||+|||+||++||++||+|+..+ T Consensus 1 ~p~~~P~HiaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~~Ev~~Lm~l~~~~ 80 (228) T d1ueha_ 1 LPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWA 80 (228) T ss_dssp CCTTCCCEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC--------------CHHHHHH T ss_pred CCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 98999989999645878999877997658999999999999999987698689854114542145430267899999999 Q ss_pred HHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 10000100002832631387445100002358999874202543115897248815789987787643676489687781 Q gi|254780775|r 86 LKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDV 165 (243) Q Consensus 86 l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~I 165 (243) +.+..+.+.+++|+|+||||++.||+++++.+.++|+.|++|++++||||+|||||+||++|++++++++.++.+++++| T Consensus 81 l~~~~~~~~~~~i~i~~iG~~~~lp~~~~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~~~~~i 160 (228) T d1ueha_ 81 LDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQI 160 (228) T ss_dssp HHHTHHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEEESCCHHHHHHHHHHHHHHHHHTTSCCGGGC T ss_pred HHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 98768888853579999898632223566666667885268998258998555541279999998889998379987674 Q ss_pred HHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 15531011336787765269945785213365640113553886368788889899999999986300 Q gi|254780775|r 166 DSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLRD 233 (243) Q Consensus 166 ~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r~ 233 (243) +++.|.++||++++||||||||||||+|||||||||++||||||+|++||||+..||..||.+|++|+ T Consensus 161 ~~~~~~~~l~~~~~pdpDLlIRTsGe~RLSnFLlWQ~aysEl~F~d~lWPdf~~~dl~~al~~y~~R~ 228 (228) T d1ueha_ 161 DEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE 228 (228) T ss_dssp CHHHHHTTSTTTTSCCCCEEEECSSCCSCTTSSCGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHTCC T ss_pred HHHHEECCCCCCCCCCCCEEEECCCCEECCCCCHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 22202023244799997679963896633563010204525997788887699999999999987569 No 2 >d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Probab=100.00 E-value=0 Score=618.10 Aligned_cols=228 Identities=43% Similarity=0.770 Sum_probs=224.9 Q ss_pred HCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH Q ss_conf 20689882699984885189997599877989999999999999999769868999720233653230124888898886 Q gi|254780775|r 5 MMSSSPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKS 84 (243) Q Consensus 5 ~~~~~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~ 84 (243) |.++++|+|||||||||||||+++|++..+||++|++++.++++||.++||++|||||||+|||+||++||++||+|+.. T Consensus 2 i~~~~lP~HvAiImDGNrRwAk~~g~~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafSteN~~R~~~Ev~~Lm~l~~~ 81 (229) T d1f75a_ 2 INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGD 81 (229) T ss_dssp CCSTTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHH T ss_pred CCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHH T ss_conf 78467998689965385899987799765899999999999999987547766898632143215616889999988999 Q ss_pred HHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHH Q ss_conf 31000010000283263138744510000235899987420254311589724881578998778764367648968778 Q gi|254780775|r 85 FLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHD 164 (243) Q Consensus 85 ~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~l~~~~~~~~~~~~~ 164 (243) ++.+..+.+.+++|++++||+++.||+++++.+.++|+.|++|++++||||+|||||+||++|++++++++.++.+++++ T Consensus 82 ~l~~~~~~~~~~~iri~~iG~~~~lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~i~~~~~~~~~~~~~ 161 (229) T d1f75a_ 82 FLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDE 161 (229) T ss_dssp HHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHHHTTSSCGGG T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 99887666654200100133223436888888999999704799739999626763146788888877641011235135 Q ss_pred HHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 11553101133678776526994578521336564011355388636878888989999999998630 Q gi|254780775|r 165 VDSSLIAKYLDTSDVPDPDLIIRTGGEKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQYNLR 232 (243) Q Consensus 165 I~~~~i~~~L~~~~~p~pDLlIRTsGe~RLSnFllwq~~ysEl~F~~~lWPdf~~~dl~~~i~~y~~r 232 (243) |+++.|.++|+++++||||||||||||+|||||||||++||||||+|++||||+..||..||.+||+| T Consensus 162 i~e~~~~~~L~t~~~PdpDLlIRTsGe~RLSnFLLWQ~aYsEl~F~d~lWPdf~~~dl~~ai~~y~~R 229 (229) T d1f75a_ 162 ISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQNR 229 (229) T ss_dssp CSHHHHGGGSTTTTSCCCSEEEECTTCCBCCSCSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHTTC T ss_pred HHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHCC T ss_conf 66766997367889989665884599601002013301355799778888669999999999998659 No 3 >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} Probab=86.05 E-value=1.1 Score=22.53 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=42.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 77989999999999999999769868999720233653230124888898886310000100002832631 Q gi|254780775|r 32 RCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRV 102 (243) Q Consensus 32 ~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~ 102 (243) ...+++...+.+...++.|..+|++++.+.+....+ ..+.+| .++...+.+.+..+.+.++|+++-+ T Consensus 75 ~~~~~~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~-~~~~~~---~~~~~~~~l~~l~~~a~~~Gv~l~l 141 (278) T d1i60a_ 75 DEKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQ-KIVKEE---IKKSSVDVLTELSDIAEPYGVKIAL 141 (278) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSS-CCCHHH---HHHHHHHHHHHHHHHHGGGTCEEEE T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHCCEEEE T ss_conf 989999999999999999997499845566666888-877799---9999999999999999973982464 No 4 >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} Probab=70.02 E-value=3.6 Score=19.37 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=67.4 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.|+.-+.+...+.|.+.-+.+|...+.+...+.... ++.+ +.|-- ...+...+.. T Consensus 22 ~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~--------~~pv-i~gv~---~~s~~~~i~~ 89 (295) T d1hl2a_ 22 KASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKG--------KIKL-IAHVG---CVSTAESQQL 89 (295) T ss_dssp HHHHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT--------TSEE-EEECC---CSSHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCC--------CCCE-EECCC---CCHHHHHHHH T ss_conf 9999999999997699989978576564448999999998666775214--------4310-00121---1014578898 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--815789987787643676 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDIE 156 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~~ 156 (243) +....+..-...+-+.-.| .+.+++++-.+.++.+.. T Consensus 90 a~~a~~~Gad~~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 128 (295) T d1hl2a_ 90 AASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSAD 128 (295) T ss_dssp HHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHT T ss_pred HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC T ss_conf 877986397322221023357773779999998750467 No 5 >d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=33.40 E-value=14 Score=15.50 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHCCCCEEEEE Q ss_conf 999999999997698689997 Q gi|254780775|r 41 EVFNEIVAAAAEVGIKNLTIF 61 (243) Q Consensus 41 ~~l~~ii~~~~~~gI~~lTvy 61 (243) +.-.++++.|.++||+++++| T Consensus 12 eiA~Ri~ra~~elgi~tvavy 32 (114) T d2j9ga2 12 EIALRILRACKELGIKTVAVH 32 (114) T ss_dssp HHHHHHHHHHHHHTCEEEEEE T ss_pred HHHHHHHHHHHHHCCCEEEEE T ss_conf 999999999999689527774 No 6 >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Probab=32.08 E-value=15 Score=15.36 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=63.4 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.|+.-|.+-+.+.|.+.=+.+|...+++...+.... ++.+-+ |-- ...+.+.+.. T Consensus 23 ~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~--------~~~vi~-gv~---~~s~~~~i~~ 90 (292) T d1xkya1 23 FAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDK--------RVPVIA-GTG---SNNTHASIDL 90 (292) T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT--------SSCEEE-ECC---CSCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCC--------CCEEEE-ECC---CCCHHHHHHH T ss_conf 9999999999997799989977586516669899999999999998189--------851999-357---4219999999 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) +...-+..-...+-+.-.| .++++|.+-.+.+++.+ T Consensus 91 a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~ 128 (292) T d1xkya1 91 TKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST 128 (292) T ss_dssp HHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC T ss_pred HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 99999849999997898788989999999999984368 No 7 >d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]} Probab=31.72 E-value=15 Score=15.32 Aligned_cols=44 Identities=25% Similarity=0.475 Sum_probs=30.6 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEE Q ss_conf 81578998778764367648968778115531011336787765269 Q gi|254780775|r 139 SSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLI 185 (243) Q Consensus 139 ggr~EI~~A~k~l~~~~~~~~~~~~~I~~~~i~~~L~~~~~p~pDLl 185 (243) +--.|+.+-|+.++++..++++++++-...+... | ...|.|.|+ T Consensus 29 ~~spe~~~~Vr~LV~~L~~~~i~~EEF~~~Lq~~-l--ns~pqP~lv 72 (97) T d2p6va1 29 KQSTETAANVKELVQNLLDGKIEAEDFTSRLYRE-L--NSSPQPYLV 72 (97) T ss_dssp SSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH-T--TCCCCTTHH T ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-H--CCCCCCHHH T ss_conf 9893488999999999983886899999999998-6--599972239 No 8 >d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Probab=30.92 E-value=16 Score=15.24 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHCCCCEEEEE Q ss_conf 999999999997698689997 Q gi|254780775|r 41 EVFNEIVAAAAEVGIKNLTIF 61 (243) Q Consensus 41 ~~l~~ii~~~~~~gI~~lTvy 61 (243) +.-.++++.|.++||+++.+| T Consensus 12 EiA~Ri~ra~~elgi~tvav~ 32 (114) T d1ulza2 12 EIAVRIIRACKELGIPTVAIY 32 (114) T ss_dssp HHHHHHHHHHHHHTCCEEEEE T ss_pred HHHHHHHHHHHHHCCCEEEEE T ss_conf 999999999999629757873 No 9 >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Probab=30.10 E-value=16 Score=15.15 Aligned_cols=104 Identities=10% Similarity=0.090 Sum_probs=65.0 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH Q ss_conf 99999999999976986899972023365323012488889888631000010000283263138744510000235899 Q gi|254780775|r 40 IEVFNEIVAAAAEVGIKNLTIFAFSINNWRRPVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKE 119 (243) Q Consensus 40 ~~~l~~ii~~~~~~gI~~lTvyafS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iGd~~~lp~~i~~~i~~ 119 (243) .+.+.+.++|+.+.|+.-+.+..-+.|.+.=+.+|...+++...+.... ++.+ +.|--..-..+..+.... T Consensus 27 ~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~--------~~~v-i~g~~~~s~~~~i~~a~~ 97 (296) T d1xxxa1 27 TATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGD--------RARV-IAGAGTYDTAHSIRLAKA 97 (296) T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTT--------TSEE-EEECCCSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHHCC--------CCCE-EECCCCCHHHHHHHHHHH T ss_conf 9999999999997699989978556454348999999999899998445--------6624-740565106789999888 Q ss_pred HHHHHCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHH Q ss_conf 9874202543115897248--81578998778764367 Q gi|254780775|r 120 AEDQTRLNTGLNLFIAFNY--SSRDEISRAIKNIFQDI 155 (243) Q Consensus 120 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~k~l~~~~ 155 (243) +++. .-...+-+.-.| .+.+++.+-.+.+++.. T Consensus 98 a~~~---Gad~v~i~~P~~~~~~~~~l~~~~~~v~~~~ 132 (296) T d1xxxa1 98 CAAE---GAHGLLVVTPYYSKPPQRGLQAHFTAVADAT 132 (296) T ss_dssp HHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHTTC T ss_pred HHHH---CCCEEEEEECCCCCCCHHHHHHHHHHHHHHC T ss_conf 7873---3784999725678989999999999999725 No 10 >d1fvpa_ c.1.16.2 (A:) Non-fluorescent flavoprotein (luxF, FP390) {Photobacterium phosphoreum [TaxId: 659]} Probab=26.75 E-value=19 Score=14.78 Aligned_cols=139 Identities=12% Similarity=0.081 Sum_probs=69.2 Q ss_pred CCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHH----HHHHHCC-----CCE-EEEEECCCCCCCCCHHHHHHH Q ss_conf 988269998488518999759987798999999999999----9999769-----868-999720233653230124888 Q gi|254780775|r 9 SPPDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIV----AAAAEVG-----IKN-LTIFAFSINNWRRPVSEISEL 78 (243) Q Consensus 9 ~~P~HIaiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii----~~~~~~g-----I~~-lTvyafS~eN~~R~~~Ev~~L 78 (243) .+|-.+|-.=+.--+||-++|++...+...+.+.+.+.+ +.+.+.| +.. +.+.++=.|+-.+-.++.... T Consensus 69 ~~~~~~~~~s~~~~~~aa~~g~~~~~~~~~~~~~~~~~l~~yr~~a~~~g~~~~~~~~~l~~~v~vaed~e~A~~~a~~~ 148 (231) T d1fvpa_ 69 GEKLYVLATSENTVDIAAKYALPLVFKWDDINEERLKLLSFYNASASKYNKNIDLVRHQLMLHVNVNEAETVAKEELKLY 148 (231) T ss_dssp TTEEEEECCSSHHHHHHHHTTCCEEECSSSCHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEECCEECSSHHHHHHHHHHH T ss_pred CCCEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHH T ss_conf 99989993698999999983999898547999999999999998876515687775279999999848878999998775 Q ss_pred HHHHHHHHHHCCC----CCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEE-CCCHHHHHHHHHHHHHH Q ss_conf 8988863100001----000028326313874451000023589998742025431158972-48815789987787643 Q gi|254780775|r 79 VKLIKSFLKKGFY----SLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGLNLFIAF-NYSSRDEISRAIKNIFQ 153 (243) Q Consensus 79 ~~l~~~~l~~~~~----~~~~~~iki~~iGd~~~lp~~i~~~i~~~e~~T~~n~~~~Lnia~-~Yggr~EI~~A~k~l~~ 153 (243) +..++..... ...+.-++-..+|. |+++.+.|.+..........+. +++ +.+.++++..+++.+.+ T Consensus 149 ---~~~y~~~~~~~~~~~~~e~~~~~~~iGT----peev~e~I~~l~~e~~G~~~~l--l~f~~~~~~d~~~~si~~~~~ 219 (231) T d1fvpa_ 149 ---IENYVACTQPSNFNGSIDSIIQSNVTGS----YKDCLSYVANLAGKFDNTVDFL--LCFESMQDQNKKKSVMIDLNN 219 (231) T ss_dssp ---HHHHHHHSCCSSTTTCSHHHHHHSCEES----SHHHHHHHHHHHHHTTTCEEEE--ECCCSCCCHHHHHHHHHHHHH T ss_pred ---HHHHHHHCCCCCHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHHCCCCEEE--EECCCCCCHHHHHHHHHHHHH T ss_conf ---6677652112126778999876257688----8999999999998627977799--943777999999999999999 Q ss_pred HHH Q ss_conf 676 Q gi|254780775|r 154 DIE 156 (243) Q Consensus 154 ~~~ 156 (243) +|. T Consensus 220 ~Vi 222 (231) T d1fvpa_ 220 QVI 222 (231) T ss_dssp HHH T ss_pred HHH T ss_conf 866 No 11 >d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus furiosus [TaxId: 2261]} Probab=26.01 E-value=8.7 Score=16.89 Aligned_cols=26 Identities=31% Similarity=0.655 Sum_probs=19.4 Q ss_pred EECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 9848851899975998779899999999999999997698689997202 Q gi|254780775|r 16 IIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFS 64 (243) Q Consensus 16 iImDGNrRwAk~~gl~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvyafS 64 (243) .|.||+|||. .|..+|.+.+-+...- T Consensus 56 ~Ii~G~~R~~-----------------------Aak~lG~~~IP~iv~d 81 (232) T d1vk1a_ 56 LIVDGHHRWA-----------------------GLQKLGAKRAPSVILD 81 (232) T ss_dssp EEEECHHHHH-----------------------HHHHHTCCEEEEEEEC T ss_pred EEEECHHHHH-----------------------HHHHCCCCCCCEEEEE T ss_conf 9995289999-----------------------9998799856789983 No 12 >d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]} Probab=24.07 E-value=21 Score=14.46 Aligned_cols=25 Identities=4% Similarity=0.163 Sum_probs=11.7 Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 1589724881578998778764367 Q gi|254780775|r 131 NLFIAFNYSSRDEISRAIKNIFQDI 155 (243) Q Consensus 131 ~Lnia~~Yggr~EI~~A~k~l~~~~ 155 (243) .+.|+-.|-|+.=-...+..+.+.. T Consensus 85 ~~~v~p~~rg~Glg~~ll~~~~~~a 109 (163) T d1yr0a1 85 SVYVHKDARGHGIGKRLMQALIDHA 109 (163) T ss_dssp EEEECTTSTTSSHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCEEEEECCCCCC T ss_conf 7655103357887205110200001 No 13 >d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum [TaxId: 1515]} Probab=23.79 E-value=21 Score=14.43 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=26.1 Q ss_pred EEECCCHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHH Q ss_conf 9724881578998778764367-648968778115531 Q gi|254780775|r 134 IAFNYSSRDEISRAIKNIFQDI-ESGSVCSHDVDSSLI 170 (243) Q Consensus 134 ia~~Yggr~EI~~A~k~l~~~~-~~~~~~~~~I~~~~i 170 (243) +.+.-..+++|..|++.|++++ ..+.++++||-.-.| T Consensus 8 ttv~~n~~e~I~~at~eLl~~ii~~N~l~~edi~Sv~F 45 (112) T d1xhoa_ 8 TTVSDNTADEIVAETQKLLKEMAEKNGLEEDDIISIIF 45 (112) T ss_dssp EECSSSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEE T ss_conf 24487899999999999999999975999889899999 No 14 >d2ge3a1 d.108.1.1 (A:6-169) Probable acetyltransferase Atu2290 {Agrobacterium tumefaciens [TaxId: 358]} Probab=23.26 E-value=22 Score=14.36 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=3.5 Q ss_pred EEEECCCHHH Q ss_conf 8972488157 Q gi|254780775|r 133 FIAFNYSSRD 142 (243) Q Consensus 133 nia~~Yggr~ 142 (243) .|.-.|-|+. T Consensus 87 ~v~~~~rg~G 96 (164) T d2ge3a1 87 GILPAYRNKG 96 (164) T ss_dssp EECGGGTTSS T ss_pred EECHHHCCCC T ss_conf 9674562110 No 15 >d1qsra_ d.108.1.1 (A:) Catalytic domain of GCN5 histone acetyltransferase {Tetrahymena thermophila [TaxId: 5911]} Probab=23.21 E-value=22 Score=14.36 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=22.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 87798999999999999999976986899972 Q gi|254780775|r 31 PRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFA 62 (243) Q Consensus 31 ~~~~Gh~~G~~~l~~ii~~~~~~gI~~lTvya 62 (243) |...|.-.|-.-+..+.+++.+.|++.|.+++ T Consensus 82 p~~rg~GiG~~Ll~~l~~~a~~~g~~~i~l~~ 113 (162) T d1qsra_ 82 ANEQVRGYGTRLMNKFKDHMQKQNIEYLLTYA 113 (162) T ss_dssp GGGCSSSHHHHHHHHHHHHHHHTTCCEEEEEE T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 77826726899999999999868982999854 Done!