RPSBLAST alignment for GI: 254780775 and conserved domain: cd00475

>gnl|CDD|29593 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.. Length = 221

 Score =  250 bits (641), Expect = 2e-67
 Identities = 95/219 (43%), Positives = 139/219 (63%)

Query: 11  PDHIGIIMDGNGRWAAARGLPRCAGHRKGIEVFNEIVAAAAEVGIKNLTIFAFSINNWRR 70
           P H+  IMDGN RWA  RG+ R  GH+ G E   +I+    E+G+K +T++AFS  NW+R
Sbjct: 1   PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKR 60

Query: 71  PVSEISELVKLIKSFLKKGFYSLKKNNIKVRVIGNRLSLDDDILCVLKEAEDQTRLNTGL 130
           P  E+  L++L +  L++    L+K  +++R+IG+   L + +   +K+AE+ T+ NTG 
Sbjct: 61  PKEEVDFLMELFRDVLRRILKELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGF 120

Query: 131 NLFIAFNYSSRDEISRAIKNIFQDIESGSVCSHDVDSSLIAKYLDTSDVPDPDLIIRTGG 190
            L +AFNY  R EI  A++ I + +++G +   D+D S + K+L T D PDPDL+IRT G
Sbjct: 121 TLNVAFNYGGRQEIIHAVREIAEKVKAGKLTPEDIDESTLNKHLYTHDSPDPDLLIRTSG 180

Query: 191 EKRLSDFLLWQVAYSEFVFIPEYWPDFSRELFFHALNQY 229
           E+RLS+FLLWQ AYSE  F    WPDF+   F  AL  Y
Sbjct: 181 EQRLSNFLLWQSAYSELYFSDVLWPDFTFWDFLRALLDY 219