Query gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str. psy62] Match_columns 186 No_of_seqs 108 out of 1882 Neff 6.4 Searched_HMMs 33803 Date Wed Jun 1 14:00:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780776.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1y69_8 Ribosome recycling fac 100.0 3.1E-30 9.2E-35 228.0 5.3 113 67-186 1-113 (113) 2 >1wih_A Mitochondrial ribosome 99.9 3.4E-26 1E-30 200.3 2.7 82 31-112 1-83 (84) 3 >1ise_A Ribosome recycling fac 99.9 1.2E-22 3.5E-27 176.1 16.0 112 1-186 2-113 (113) 4 >1is1_A Ribosome recycling fac 99.9 2.4E-22 7.2E-27 173.9 16.5 111 2-186 3-113 (113) 5 >1eh1_A Ribosome recycling fac 99.9 5.5E-22 1.6E-26 171.5 14.9 109 7-185 7-115 (115) 6 >1wqg_A Ribosome recycling fac 99.9 6.9E-21 2.1E-25 163.9 16.4 107 7-185 6-112 (113) 7 >1dd5_A Ribosome recycling fac 99.8 2.9E-20 8.4E-25 159.7 12.7 84 103-186 31-114 (114) 8 >1ise_A Ribosome recycling fac 99.8 1.5E-21 4.3E-26 168.6 5.5 72 34-105 1-72 (72) 9 >1wqg_A Ribosome recycling fac 99.8 1.3E-21 3.7E-26 169.0 5.1 72 34-105 1-72 (72) 10 >1ge9_A Ribosome recycling fac 99.8 2.5E-19 7.3E-24 153.3 16.2 105 7-185 9-113 (114) 11 >1is1_A Ribosome recycling fac 99.8 1.7E-21 5.2E-26 168.0 4.6 72 34-105 1-72 (72) 12 >1dd5_A Ribosome recycling fac 99.8 5.7E-21 1.7E-25 164.5 5.3 71 35-105 1-71 (71) 13 >1eh1_A Ribosome recycling fac 99.8 7.7E-21 2.3E-25 163.6 5.3 70 36-105 1-70 (70) 14 >1ge9_A Ribosome recycling fac 99.8 1.4E-19 4.1E-24 155.0 2.1 70 35-105 1-70 (70) 15 >1zj8_A Probable ferredoxin-de 82.5 3.1 9.1E-05 22.6 5.2 85 40-124 61-175 (211) 16 >2fqm_A Phosphoprotein, P prot 70.2 8.3 0.00025 19.6 4.6 33 94-126 15-48 (52) 17 >2akj_A Ferredoxin--nitrite re 67.8 9.8 0.00029 19.1 6.2 84 40-123 41-156 (191) 18 >1in0_A YAJQ protein, HI1034; 65.9 3.7 0.00011 22.0 2.1 35 70-104 10-44 (72) 19 >3gas_A Heme oxygenase; FMN-bi 64.8 5.4 0.00016 20.9 2.8 54 52-122 21-79 (80) 20 >3f9t_A TDC, L-tyrosine decarb 64.0 12 0.00034 18.6 4.4 63 61-123 43-106 (107) 21 >2arz_A Hypothetical protein P 63.6 4.8 0.00014 21.2 2.3 55 52-123 27-84 (92) 22 >1o9d_A 14-3-3-like protein C; 62.0 12 0.00037 18.4 6.3 31 104-134 41-71 (116) 23 >3dnh_A Uncharacterized protei 59.1 4.6 0.00014 21.4 1.6 33 88-120 54-89 (90) 24 >3htk_A Structural maintenance 42.1 25 0.00075 16.3 5.1 27 155-181 8-34 (60) 25 >2jhe_A Transcription regulato 39.6 28 0.00082 16.0 5.7 57 65-121 2-61 (73) 26 >1vcs_A Vesicle transport thro 39.0 28 0.00084 16.0 6.2 57 102-165 27-94 (102) 27 >2j8s_A ACRB, acriflavine resi 38.6 5.7 0.00017 20.7 -0.6 79 27-105 52-149 (185) 28 >2eq5_A 228AA long hypothetica 36.2 24 0.00072 16.4 2.3 65 58-125 7-71 (101) 29 >1x4r_A PARP14 protein; WWE do 35.3 26 0.00077 16.2 2.3 41 68-108 37-77 (99) 30 >3cw2_C Translation initiation 34.2 34 0.00099 15.5 4.5 65 65-129 7-79 (91) 31 >2br9_A 14-3-3E, 14-3-3 protei 32.6 36 0.0011 15.3 7.4 30 104-133 36-65 (111) 32 >2npm_A 14-3-3 domain containi 31.3 37 0.0011 15.1 6.7 74 60-133 8-91 (137) 33 >2jv2_A Putative uncharacteriz 29.3 24 0.00071 16.4 1.3 49 55-104 4-53 (83) 34 >1aop_A Sirhp, sulfite reducta 27.1 16 0.00047 17.7 0.1 85 41-125 9-120 (154) 35 >1s5j_A DNA polymerase I; repl 26.2 45 0.0013 14.6 2.4 88 40-130 18-110 (163) 36 >3a1s_A Iron(II) transport pro 26.1 46 0.0013 14.5 4.1 42 73-114 10-63 (85) 37 >2dgb_A Hypothetical protein P 25.5 47 0.0014 14.5 5.2 50 71-121 17-66 (84) 38 >3efc_A OMP85, outer membrane 24.7 43 0.0013 14.7 1.9 35 69-103 35-71 (73) 39 >1xxx_A DHDPS, dihydrodipicoli 23.6 51 0.0015 14.2 2.7 43 73-121 38-80 (84) 40 >3e96_A Dihydrodipicolinate sy 23.1 52 0.0015 14.2 2.8 41 75-121 43-83 (99) 41 >1vk8_A Hypothetical protein T 22.9 52 0.0015 14.1 5.6 55 65-124 19-78 (106) 42 >1sek_A Serpin K; serine prote 22.7 30 0.00089 15.8 0.8 46 64-109 112-157 (171) 43 >2wkj_A N-acetylneuraminate ly 22.4 41 0.0012 14.9 1.5 45 75-124 40-84 (85) 44 >2qn6_B Translation initiation 21.7 55 0.0016 14.0 3.0 66 64-129 8-81 (93) 45 >3ff5_A PEX14P, peroxisomal bi 21.6 55 0.0016 14.0 3.2 51 104-159 2-52 (54) 46 >2hbp_A Cytoskeleton assembly 21.4 32 0.00094 15.6 0.7 31 94-124 34-64 (68) 47 >1ujr_A Hypothetical protein A 20.9 57 0.0017 13.9 2.2 41 68-108 40-80 (110) 48 >1q8k_A Eukaryotic translation 20.5 58 0.0017 13.8 3.0 65 65-130 8-77 (125) 49 >2j69_A Bacterial dynamin-like 20.1 59 0.0018 13.8 9.5 64 105-181 235-298 (300) 50 >2o8p_A 14-3-3 domain containi 20.0 59 0.0018 13.8 5.6 30 104-133 41-70 (113) No 1 >>1y69_8 Ribosome recycling factor; RRF; 3.33A {Deinococcus radiodurans} (8:) Probab=99.96 E-value=3.1e-30 Score=227.95 Aligned_cols=113 Identities=32% Similarity=0.464 Sum_probs=109.7 Q ss_pred EEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 89965967899999996317889984547734788615556899999999999988899999999999999999987535 Q gi|254780776|r 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKS 146 (186) Q Consensus 67 ~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~ 146 (186) +|+||||+++++|++||++||||+||++ ++|+||+|+|++++|.|++.+|+||++|||+|++++++++++++. T Consensus 1 iI~p~D~~~ik~I~kAI~~s~l~lnP~v-------~~P~~T~E~R~~l~K~~k~~~E~aKv~iRniR~~~~~~iKk~kk~ 73 (113) T 1y69_8 1 MISDIRKDAEVRMDKCVEAFKTQISKIR-------TGGGGTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKD 73 (113) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHGGGTC-------CSSCCSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTS T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9756885689999999999877987114-------799977368999999999999999999999999999999987524 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 8999789988899999999999999999999999887449 Q gi|254780776|r 147 GKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMHF 186 (186) Q Consensus 147 ~~iseD~~~~~~~~iq~lt~~~~~~id~~~~~Kekell~~ 186 (186) +++|||+.++++++||++||+|++++|++++.||||||+| T Consensus 74 ~~iseD~~k~~e~~iqkltd~~~~~id~~~~~Kekeim~v 113 (113) T 1y69_8 74 KEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQF 113 (113) T ss_dssp SSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 8788678887999999999999999999999999998479 No 2 >>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} (A:) Probab=99.92 E-value=3.4e-26 Score=200.27 Aligned_cols=82 Identities=32% Similarity=0.545 Sum_probs=80.9 Q ss_pred CCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHH Q ss_conf 888967824507885586423998765120578389899659-6789999999631788998454773478861555689 Q gi|254780776|r 31 GRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEE 109 (186) Q Consensus 31 Grasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D-~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E 109 (186) |||||++||+|+|+|||+++||++||+|+++++++|+|+||| ++.+++|++||++|||||||++||++|+|+||+||+| T Consensus 1 GRasp~lld~i~V~~yg~~~pL~~lA~Isv~~~~~l~I~~~D~~s~~~~I~kAI~~s~L~lnP~~dg~~Iri~iP~lT~E 80 (84) T 1wih_A 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG 80 (84) T ss_dssp CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS T ss_pred CCCCHHHCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC T ss_conf 98894781764997789844389986655268643898612242004899998873789887442798999878989777 Q ss_pred HHH Q ss_conf 999 Q gi|254780776|r 110 RRL 112 (186) Q Consensus 110 ~R~ 112 (186) +|+ T Consensus 81 ~Rk 83 (84) T 1wih_A 81 PSS 83 (84) T ss_dssp SCC T ss_pred CCC T ss_conf 678 No 3 >>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} (A:1-32,A:105-185) Probab=99.90 E-value=1.2e-22 Score=176.06 Aligned_cols=112 Identities=35% Similarity=0.558 Sum_probs=107.2 Q ss_pred CCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHH Q ss_conf 94200789999999999999999975313888896782450788558642399876512057838989965967899999 Q gi|254780776|r 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVE 80 (186) Q Consensus 1 ~~e~~dl~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~ 80 (186) +++|+ .+++.+|.++++.|...|++|||||| T Consensus 2 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 32 (113) T 1ise_A 2 ISDIR--KDAEVRMDKCVEAFKTQISKIRTGRA----------------------------------------------- 32 (113) T ss_dssp CHHHH--HHHHHHHHHHHHHHHHHHTTSCCSSC----------------------------------------------- T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------------------- T ss_conf 58999--99999999999999999987731899----------------------------------------------- Q ss_pred HHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99631788998454773478861555689999999999998889999999999999999998753589997899888999 Q gi|254780776|r 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEND 160 (186) Q Consensus 81 kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~ 160 (186) ||+|+|++++|.|++.+|+||++|||+||++++.||++++.+++|||+.++++++ T Consensus 33 -------------------------LTeErRkeLvK~aKk~~E~aKvsIRnIRrda~k~iKk~~K~~~isEDd~k~~eke 87 (113) T 1ise_A 33 -------------------------LTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDD 87 (113) T ss_dssp -------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHH T ss_pred -------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf -------------------------7899999999999999999999999999999999998761389986688889999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999887449 Q gi|254780776|r 161 IQKITDSTIKNIDSFFEEKKKEIMHF 186 (186) Q Consensus 161 iq~lt~~~~~~id~~~~~Kekell~~ 186 (186) ||++||+|++++|.+++.||+|||++ T Consensus 88 IQkltdk~i~~id~l~~~KEKEIl~V 113 (113) T 1ise_A 88 VQKLTDAAIKKIEAALADKEAELMQF 113 (113) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999999997479 No 4 >>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} (A:1-32,A:105-185) Probab=99.90 E-value=2.4e-22 Score=173.87 Aligned_cols=111 Identities=40% Similarity=0.600 Sum_probs=106.6 Q ss_pred CHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH Q ss_conf 42007899999999999999999753138888967824507885586423998765120578389899659678999999 Q gi|254780776|r 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVER 81 (186) Q Consensus 2 ~e~~dl~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~k 81 (186) ||| +.+++.+|+++++.++.+|+++||||| T Consensus 3 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 32 (113) T 1is1_A 3 NEI--KKDAQERMDKSVEALKNNLSKVRTGRA------------------------------------------------ 32 (113) T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHTTSCCSSC------------------------------------------------ T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHCCCC------------------------------------------------ T ss_conf 889--999999999999999999987613899------------------------------------------------ Q ss_pred HHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 96317889984547734788615556899999999999988899999999999999999987535899978998889999 Q gi|254780776|r 82 GIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 (186) Q Consensus 82 AI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~i 161 (186) ||+|+|++|+|.|++++|+||++||++||++++.++++++.+++|||+.++++++| T Consensus 33 ------------------------LTeErRkeLvK~aKk~~E~aKvsIRnIRrda~~~iKk~kK~~~isEDd~k~~ekeI 88 (113) T 1is1_A 33 ------------------------LTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEI 88 (113) T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH T ss_pred ------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf ------------------------88999999999999999999999999999999999875323899877888999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999887449 Q gi|254780776|r 162 QKITDSTIKNIDSFFEEKKKEIMHF 186 (186) Q Consensus 162 q~lt~~~~~~id~~~~~Kekell~~ 186 (186) |++||+|++++|.+++.||+|||++ T Consensus 89 QklTdkyi~~iD~l~k~KEKEIl~V 113 (113) T 1is1_A 89 QKLTDVAVKKIDEVLAAKEKELMEV 113 (113) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999999999999986549 No 5 >>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} (A:1-35,A:106-185) Probab=99.89 E-value=5.5e-22 Score=171.49 Aligned_cols=109 Identities=39% Similarity=0.596 Sum_probs=103.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCC Q ss_conf 89999999999999999975313888896782450788558642399876512057838989965967899999996317 Q gi|254780776|r 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHES 86 (186) Q Consensus 7 l~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s 86 (186) +.+..+.|+++++.+...++++||||++ T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 34 (115) T 1eh1_A 7 YAETRSHMQKSLEVLEHNLAGLRTGRAN---------------------------------------------------- 34 (115) T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCSSCC---------------------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC---------------------------------------------------- T ss_conf 9999999999999999999765227899---------------------------------------------------- Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 88998454773478861555689999999999998889999999999999999998753589997899888999999999 Q gi|254780776|r 87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 (186) Q Consensus 87 ~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~ 166 (186) |||+|+|++++|.||+.+|+||++||||||++++.||++++++++|||+.++++++||++|| T Consensus 35 ------------------~lTeErRkeLvK~aKk~~EeaKvsIRnIRrda~~~iKk~kK~~~iSEDd~k~~ekeIQkLTD 96 (115) T 1eh1_A 35 ------------------PLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITD 96 (115) T ss_dssp ------------------SCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH T ss_pred ------------------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf ------------------79999999999999999999999999999999999860014589986789999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999988744 Q gi|254780776|r 167 STIKNIDSFFEEKKKEIMH 185 (186) Q Consensus 167 ~~~~~id~~~~~Kekell~ 185 (186) +|+++||++++.||+|||. T Consensus 97 kyi~kID~l~k~KEKEIL~ 115 (115) T 1eh1_A 97 EFIAKADQLAEKKEQEILG 115 (115) T ss_dssp HHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999998658 No 6 >>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis; 2.15A {Mycobacterium tuberculosis} (A:1-32,A:105-185) Probab=99.87 E-value=6.9e-21 Score=163.93 Aligned_cols=107 Identities=40% Similarity=0.632 Sum_probs=99.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCC Q ss_conf 89999999999999999975313888896782450788558642399876512057838989965967899999996317 Q gi|254780776|r 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHES 86 (186) Q Consensus 7 l~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s 86 (186) |-+++++|++++.....+|++|||||+ T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 32 (113) T 1wqg_A 6 LFDAEEKMEKAVAVARDDLSTIRTGRA----------------------------------------------------- 32 (113) T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCSSC----------------------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------------------------- T ss_conf 999999999999999999988741799----------------------------------------------------- Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 88998454773478861555689999999999998889999999999999999998753589997899888999999999 Q gi|254780776|r 87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 (186) Q Consensus 87 ~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~ 166 (186) ||+|+|++|+|.|++.+|+||++|||+||++++.||++++.+++|||+.++++++||++|| T Consensus 33 -------------------LTeErRkeLvK~aKk~~E~aKvaIRniRrda~k~IKk~kK~~~isED~~k~~e~eIQklTD 93 (113) T 1wqg_A 33 -------------------LTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTH 93 (113) T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH T ss_pred -------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH T ss_conf -------------------8899999999999999999999999999999999987401589987688889999999999 Q ss_pred HHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999988744 Q gi|254780776|r 167 STIKNIDSFFEEKKKEIMH 185 (186) Q Consensus 167 ~~~~~id~~~~~Kekell~ 185 (186) +|++++|.+++.||+|||+ T Consensus 94 k~ik~iD~l~~~KEKELl~ 112 (113) T 1wqg_A 94 QYVTQIDELVKHKEGELLE 112 (113) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999998654 No 7 >>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} (A:1-33,A:105-185) Probab=99.84 E-value=2.9e-20 Score=159.72 Aligned_cols=84 Identities=45% Similarity=0.653 Sum_probs=82.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 15556899999999999988899999999999999999987535899978998889999999999999999999999988 Q gi|254780776|r 103 VPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKE 182 (186) Q Consensus 103 iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~~~~~~id~~~~~Keke 182 (186) -|.||+|+|++|+|.|++.+|+||++|||+||++++.|+++++++++|||+.++++++||++||+|++++|++++.||+| T Consensus 31 ~~~lTeErRkeLvK~aKk~~EeaKvsIRnIRrda~~~iKk~kK~k~isEDd~k~~ekeIQkLTDkyi~kID~llk~KEKE 110 (114) T 1dd5_A 31 KPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEE 110 (114) T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99922999999999999999999999999999999998864114898865888899999999999999999999999999 Q ss_pred HHCC Q ss_conf 7449 Q gi|254780776|r 183 IMHF 186 (186) Q Consensus 183 ll~~ 186 (186) ||++ T Consensus 111 Ll~V 114 (114) T 1dd5_A 111 IMEF 114 (114) T ss_dssp HHCC T ss_pred HHCC T ss_conf 7379 No 8 >>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} (A:33-104) Probab=99.84 E-value=1.5e-21 Score=168.57 Aligned_cols=72 Identities=47% Similarity=0.785 Sum_probs=71.2 Q ss_pred CHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC Q ss_conf 967824507885586423998765120578389899659678999999963178899845477347886155 Q gi|254780776|r 34 SPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 (186) Q Consensus 34 sp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~ 105 (186) ||++||+|+|+|||+++||++||+|+++++++|+|+|||++.+++|++||++|+||+||++||++|||+||| T Consensus 1 sp~lld~i~V~~yg~~~pL~~lA~Isv~~~~~l~I~~~D~~~~~~I~kAI~~s~L~lnP~~dg~~Iri~iPp 72 (72) T 1ise_A 1 SPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPP 72 (72) T ss_dssp CGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHHHTTCTTCCCEESSSEEEEECCC T ss_pred CHHHHCCEEEEECCCCCCHHHHHEEEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCC T ss_conf 979978348866899664888202451798636751422642999999998589999987579746745997 No 9 >>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis; 2.15A {Mycobacterium tuberculosis} (A:33-104) Probab=99.84 E-value=1.3e-21 Score=169.01 Aligned_cols=72 Identities=31% Similarity=0.729 Sum_probs=71.2 Q ss_pred CHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC Q ss_conf 967824507885586423998765120578389899659678999999963178899845477347886155 Q gi|254780776|r 34 SPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 (186) Q Consensus 34 sp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~ 105 (186) ||++||+|+|+|||+++||+++|+|+++++++|.|+|||++.+++|++||++||||+||++||++|||+||+ T Consensus 1 sp~lld~i~V~~yg~~~pL~~iA~isv~~~~~l~I~~~D~~~~~~I~kAI~~s~L~lnP~~dg~~Iri~iPk 72 (72) T 1wqg_A 1 NPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQ 72 (72) T ss_dssp CGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHHHHSTTCCCCEECSSCEEEECCC T ss_pred CHHHCCCEEEEECCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCC T ss_conf 978808748855899564588764422575310001002778999999998555678876578601311677 No 10 >>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} (A:1-36,A:107-184) Probab=99.84 E-value=2.5e-19 Score=153.31 Aligned_cols=105 Identities=34% Similarity=0.550 Sum_probs=98.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCC Q ss_conf 89999999999999999975313888896782450788558642399876512057838989965967899999996317 Q gi|254780776|r 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHES 86 (186) Q Consensus 7 l~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s 86 (186) |.+++..|.+++++++.+++++||.|+| T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 36 (114) T 1ge9_A 9 FKEAEKDMKKAVEYYKNEIAGLRTSRAS---------------------------------------------------- 36 (114) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCSSCC---------------------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC---------------------------------------------------- T ss_conf 9999999999999999999988507999---------------------------------------------------- Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 88998454773478861555689999999999998889999999999999999998753589997899888999999999 Q gi|254780776|r 87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 (186) Q Consensus 87 ~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~ 166 (186) ||+|+|++++|.|++.+|+||++|||+||+++++|++. +++|||+.++++++||++|| T Consensus 37 -------------------lTeErRkeLvK~aKk~~E~aKvsIRnIRrda~kkiKK~---k~isED~~k~~e~eIQkltd 94 (114) T 1ge9_A 37 -------------------LTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEEL---EGISEDEKKRALERLQKLTD 94 (114) T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHHHH T ss_pred -------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHH T ss_conf -------------------98999999999989989999999999999998876876---25887889889999999999 Q ss_pred HHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999988744 Q gi|254780776|r 167 STIKNIDSFFEEKKKEIMH 185 (186) Q Consensus 167 ~~~~~id~~~~~Kekell~ 185 (186) +|++++|++++.||+|||+ T Consensus 95 k~ikkiD~l~k~KEKELl~ 113 (114) T 1ge9_A 95 KYIDEINKLMEAKEKEIMS 113 (114) T ss_dssp HHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999998624 No 11 >>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} (A:33-104) Probab=99.83 E-value=1.7e-21 Score=168.04 Aligned_cols=72 Identities=47% Similarity=0.834 Sum_probs=71.2 Q ss_pred CHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC Q ss_conf 967824507885586423998765120578389899659678999999963178899845477347886155 Q gi|254780776|r 34 SPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 (186) Q Consensus 34 sp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~ 105 (186) ||++||+|+|+|||+++||+++|+|+++++|+|+|+|||++.+++|++||++|+||+||++||++|||+||| T Consensus 1 Np~ild~i~V~~yG~~~pL~~lA~Isv~~~~~l~I~~~D~~~i~~I~kAI~~s~L~lnP~~dg~~Iri~iPP 72 (72) T 1is1_A 1 HPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPP 72 (72) T ss_dssp CGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHHHTTSSCCCEEETTEEEEECCC T ss_pred CHHHHCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCC T ss_conf 968838748845899664899976106887368877356344999999998589999987688623126998 No 12 >>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} (A:34-104) Probab=99.82 E-value=5.7e-21 Score=164.49 Aligned_cols=71 Identities=42% Similarity=0.852 Sum_probs=70.2 Q ss_pred HHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC Q ss_conf 67824507885586423998765120578389899659678999999963178899845477347886155 Q gi|254780776|r 35 PSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 (186) Q Consensus 35 p~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~ 105 (186) |++||+|+|+|||+++||+++|+|++++++||.|+|||++.+++|++||++||||+||++||++|||+||+ T Consensus 1 P~lld~i~V~~yG~~~pL~~iA~Isv~~~~~l~I~~~D~~~~~~I~kAI~~s~L~lnP~~dg~~iri~iP~ 71 (71) T 1dd5_A 1 PAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPS 71 (71) T ss_dssp GGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHHHHSSSCCCCEECSSCEEEECCC T ss_pred HHHHCCEEEEECCCCCCHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCC T ss_conf 69978837843898652788875303776246750562225899999998515678986676520233475 No 13 >>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} (A:36-105) Probab=99.82 E-value=7.7e-21 Score=163.63 Aligned_cols=70 Identities=49% Similarity=0.856 Sum_probs=69.1 Q ss_pred HHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC Q ss_conf 7824507885586423998765120578389899659678999999963178899845477347886155 Q gi|254780776|r 36 SMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 (186) Q Consensus 36 ~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~ 105 (186) +|||+|+|+|||+++||+|+|+|+++++|||.|+|||++.+++|++||++||||+||++||++|||+||| T Consensus 1 slld~i~V~~yG~~~pL~qiA~Isv~~~~~l~I~~~D~s~~~~I~kAI~~s~LglnP~~dG~~Iri~iPP 70 (70) T 1eh1_A 1 ALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPP 70 (70) T ss_dssp GGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHHHHSSSTTCCCEEEETTEEEEECCC T ss_pred HHHCCEEEEECCCCCCHHHCEEEECCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCC T ss_conf 8838758986899521887513644889889987177767999999999789998866589878844999 No 14 >>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} (A:37-106) Probab=99.76 E-value=1.4e-19 Score=155.01 Aligned_cols=70 Identities=40% Similarity=0.826 Sum_probs=67.9 Q ss_pred HHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC Q ss_conf 67824507885586423998765120578389899659678999999963178899845477347886155 Q gi|254780776|r 35 PSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 (186) Q Consensus 35 p~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~ 105 (186) .+|||+|+|+|||+++||+|+|+|+++++|+|.|+|||++.+++|++||++ |||+||++||++|||+||| T Consensus 1 a~lld~I~V~~yG~~~pL~qiA~Isv~d~~tl~I~p~D~~~i~~I~kAI~s-nLglnP~~dg~~Iri~iPp 70 (70) T 1ge9_A 1 TALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAIRE-ELNLNPTVQGNVIRVTLPP 70 (70) T ss_dssp TTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHHHH-HHCSCCEEETTEEEEECCC T ss_pred HHHHCCEEEEECCCCCCHHHHHEEECCCCCEEEEEECCHHHHHHHHHHHHH-CCCCCCCCCCCEEEEECCC T ss_conf 799786589878984447661016538988899884506558999999985-2699877679988754898 No 15 >>1zj8_A Probable ferredoxin-dependent nitrite reductase NIRA; sulfite, siroheme, Fe4-S4, Cys- Tyr covalent bond; HET: SRM; 2.80A {Mycobacterium tuberculosis H37RV} (A:46-169,A:332-418) Probab=82.54 E-value=3.1 Score=22.56 Aligned_cols=85 Identities=12% Similarity=0.191 Sum_probs=61.5 Q ss_pred CEEEEECCCCCH---HHHHHHHHCCCC---------CEEEEEECCHHHHHHHHHHHHCCCC---------------CCCC Q ss_conf 507885586423---998765120578---------3898996596789999999631788---------------9984 Q gi|254780776|r 40 LVKVEAYGSHVP---LNQVANVTVLEP---------RMLVVSVWDKEMVASVERGIHESNL---------------GLNP 92 (186) Q Consensus 40 ~i~V~~~g~~~p---L~~lA~Is~~~~---------~~l~I~~~D~~~ik~I~kAI~~s~l---------------~l~p 92 (186) -+++-..|+.++ |..||.|+-+=+ +.+.+.-=.+..+..+.++|.+++| |+.+ T Consensus 61 mvRir~p~G~it~~ql~~la~ia~~yg~g~i~lTtRq~iql~gi~~~~~~~v~~~L~~~Gl~t~~~~~~~~~~~~~Gv~~ 140 (211) T 1zj8_A 61 MMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDVGLQTTAPEPVKHPIDHVGVQR 140 (211) T ss_dssp EEEEBCGGGEECHHHHHHHHHHHHHHSTTEEEECTTSCEEEEEECGGGHHHHHHHHHTTTCBCTCCCCCSSCCCCCEEEE T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE T ss_conf 99977788614899999999999997889399967805583788888999999999975998647765435553364375 Q ss_pred CCCCC-EEEEECC--CCCHHHHHHHHHHHHHHHHH Q ss_conf 54773-4788615--55689999999999998889 Q gi|254780776|r 93 IVEGQ-VLRIPVP--ETTEERRLALVKVAHAYAEK 124 (186) Q Consensus 93 ~~dg~-~I~i~iP--~lT~E~R~~lvK~~k~~~E~ 124 (186) +.||. .++|.+| .+|.+.-..++..|.+++.- T Consensus 141 q~dg~~~vri~~p~G~lt~~ql~~la~iA~kyg~g 175 (211) T 1zj8_A 141 LKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSD 175 (211) T ss_dssp CTTSSEEEEEBCBTTEEEHHHHHHHHHHHHHHTCC T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 26884576454588455625659999999853998 No 16 >>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} (A:1-52) Probab=70.18 E-value=8.3 Score=19.60 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=29.4 Q ss_pred CCCCEEEEECCC-CCHHHHHHHHHHHHHHHHHHH Q ss_conf 477347886155-568999999999999888999 Q gi|254780776|r 94 VEGQVLRIPVPE-TTEERRLALVKVAHAYAEKSK 126 (186) Q Consensus 94 ~dg~~I~i~iP~-lT~E~R~~lvK~~k~~~E~~K 126 (186) -.|.++++.+|. +|+|.+.+..+..+..++-+| T Consensus 15 ~~gKsL~L~~P~gLt~eQ~sQW~~TIkavvqsak 48 (52) T 2fqm_A 15 EHGKTLRLTLPEGLSGEQKSQWMLTIKAVVQSAK 48 (52) T ss_dssp TTEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 9973688737877326779999999999986503 No 17 >>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} (A:113-217,A:389-474) Probab=67.81 E-value=9.8 Score=19.12 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=59.8 Q ss_pred CEEEEECCCCC---HHHHHHHHHCCCC--CEEEEE--------ECCHHHHHHHHHHHHCCCC---------------CCC Q ss_conf 50788558642---3998765120578--389899--------6596789999999631788---------------998 Q gi|254780776|r 40 LVKVEAYGSHV---PLNQVANVTVLEP--RMLVVS--------VWDKEMVASVERGIHESNL---------------GLN 91 (186) Q Consensus 40 ~i~V~~~g~~~---pL~~lA~Is~~~~--~~l~I~--------~~D~~~ik~I~kAI~~s~l---------------~l~ 91 (186) -++|...|+.+ .|..||.|+-+=+ .++.|| =-.+..++.|.+.|.+.+| |+. T Consensus 41 m~Rir~pgG~it~~ql~~ia~ia~~yg~~g~~~iTtRq~iql~gi~~~~~~~i~~~L~~~gl~t~~~~~~~~~~~~~Gv~ 120 (191) T 2akj_A 41 MMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGLESVGLTSLLVQKDWERREYLGVH 120 (191) T ss_dssp EEECCCGGGEEEHHHHHHHHHHHHTTGGGCCEEECTTSCEEEEEECGGGHHHHHHHHHTTTCCCTCSCSSCCCCCCBEEE T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC T ss_conf 99982589758999999999999986899979986975768478888899999999997599864345664322246756 Q ss_pred CCC-CCC-EEEEECCC--CCHHHHHHHHHHHHHHHH Q ss_conf 454-773-47886155--568999999999999888 Q gi|254780776|r 92 PIV-EGQ-VLRIPVPE--TTEERRLALVKVAHAYAE 123 (186) Q Consensus 92 p~~-dg~-~I~i~iP~--lT~E~R~~lvK~~k~~~E 123 (186) ||. +|. .|.+.+|. +|.|.=..++..|.+++. T Consensus 121 ~Qkq~G~~~V~i~~p~Grit~~ql~~lA~iAekyG~ 156 (191) T 2akj_A 121 PQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGS 156 (191) T ss_dssp ECSSTTEEEEEECCGGGEECHHHHHHHHHHHHHHSS T ss_pred CCCCCCEEEEEECCCCCEECHHHHHHHHHHHHHCCC T ss_conf 556488367555047977779999999999986289 No 18 >>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} (A:1-10,A:102-163) Probab=65.92 E-value=3.7 Score=22.03 Aligned_cols=35 Identities=14% Similarity=0.404 Sum_probs=31.8 Q ss_pred ECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC Q ss_conf 65967899999996317889984547734788615 Q gi|254780776|r 70 VWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVP 104 (186) Q Consensus 70 ~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP 104 (186) .-+....+.|.++|.++.+-++++..|..+||+=. T Consensus 10 ~I~~e~AKkI~K~IKd~klKVqa~IQGd~vRVtgK 44 (72) T 1in0_A 10 IIETEMAKKITKLVKDSKIKVQTQIQGEQVRVTGK 44 (72) T ss_dssp CCCHHHHHHHHHHHHHHTCSEEEEEETTEEEEEES T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEECCCEEEECCC T ss_conf 74889999999999703874058975837887368 No 19 >>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} (A:1-80) Probab=64.76 E-value=5.4 Score=20.87 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=36.2 Q ss_pred HHHHHHHH-CCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCC-EEEEECCCC---CHHHHHHHHHHHHHHH Q ss_conf 99876512-05783898996596789999999631788998454773-478861555---6899999999999988 Q gi|254780776|r 52 LNQVANVT-VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQ-VLRIPVPET---TEERRLALVKVAHAYA 122 (186) Q Consensus 52 L~~lA~Is-~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~-~I~i~iP~l---T~E~R~~lvK~~k~~~ 122 (186) ++.++.+. +.+++++.|++ .|++-..+|+ .++||||++ .++.|..|+..++..- T Consensus 21 ~~~~~~~~~~~~a~m~~iD~-----------------~G~~l~~~~~~~vripF~~p~~~~~~~r~~LV~m~~~Ar 79 (80) T 3gas_A 21 LKKFGQVHHAENVAFKSVDS-----------------QGIVIGYNNNQTLRIEFNHEVKDPKDYKNATIELCQSVE 79 (80) T ss_dssp HHHHHCCCSCCSCEEEEEET-----------------TEEEEEETTTEEEEEECSSCCCCGGGHHHHHHHHHHHHH T ss_pred HHHHCCCCCCCEEEEEEECC-----------------CCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH T ss_conf 99837988887069999800-----------------519899749779995189858898999999999999877 No 20 >>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), structural genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} (A:30-41,A:303-397) Probab=64.02 E-value=12 Score=18.64 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=51.2 Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC-CCHHHHHHHHHHHHHHHH Q ss_conf 578389899659678999999963178899845477347886155-568999999999999888 Q gi|254780776|r 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE-TTEERRLALVKVAHAYAE 123 (186) Q Consensus 61 ~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~-lT~E~R~~lvK~~k~~~E 123 (186) .+...+.|-++++.....+.+++.+.+.-+.+..-+.+||+.+.+ .|.+-=..++..+++..+ T Consensus 43 ~~spi~~v~~~~~~~~~~i~~~L~~~Gi~v~~~~~P~vlRi~v~~~~T~~did~ll~~L~~~~~ 106 (107) T 3f9t_A 43 VIEPILNIVAIEDEDYKEVCKKLRDRGIYVSVCNCVKALRIVVXPHIKREHIDNFIEILNSIKR 106 (107) T ss_dssp SSCCSSSEEEEECTTHHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC- T ss_pred ECCCCEEEEEECCCCHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC T ss_conf 7079544898358999999999997798897278997799997499999999999999999865 No 21 >>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} (A:156-247) Probab=63.59 E-value=4.8 Score=21.23 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=41.9 Q ss_pred HHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC-C--HHHHHHHHHHHHHHHH Q ss_conf 9987651205783898996596789999999631788998454773478861555-6--8999999999999888 Q gi|254780776|r 52 LNQVANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPET-T--EERRLALVKVAHAYAE 123 (186) Q Consensus 52 L~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~l-T--~E~R~~lvK~~k~~~E 123 (186) ++..+.+.+.+.+++-|.. .|++-..++..++||||++ | .+.|..|+..++...+ T Consensus 27 ~~~~~~~~~~~a~m~~iD~-----------------~G~~i~~~~~~vripF~~p~~~~~~~r~~Lv~m~~~a~~ 84 (92) T 2arz_A 27 VELAGLPAHAAAQLAGIDT-----------------EGFHLRIGQGLHWLPFPAACGNPGAVRQALVQLARAERW 84 (92) T ss_dssp HHHHCCCCSSCCEEEEECS-----------------SEEEEEETTEEEEEECSSCCCSHHHHHHHHHHHHHCSSC T ss_pred HHHHCCCCCCCEEEEEECC-----------------CCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 9983898788669999826-----------------868999899899975899387999999999999999747 No 22 >>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} (A:1-116) Probab=62.02 E-value=12 Score=18.40 Aligned_cols=31 Identities=26% Similarity=0.111 Sum_probs=27.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5556899999999999988899999999999 Q gi|254780776|r 104 PETTEERRLALVKVAHAYAEKSKISVRNIRR 134 (186) Q Consensus 104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~ 134 (186) |.||.|-|.-|.-.-|.....-|.+.|.+-. T Consensus 41 ~eLt~eERnLLSvaYKn~i~~rR~swR~i~s 71 (116) T 1o9d_A 41 EELTVEERNLLSVAYKNVIGARRASWRIISS 71 (116) T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 8799999999999998864416999999989 No 23 >>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; 1.94A {Agrobacterium tumefaciens str} (A:169-258) Probab=59.14 E-value=4.6 Score=21.38 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=26.3 Q ss_pred CCCCCCCCCCEEEEECCCC-C--HHHHHHHHHHHHH Q ss_conf 8998454773478861555-6--8999999999999 Q gi|254780776|r 88 LGLNPIVEGQVLRIPVPET-T--EERRLALVKVAHA 120 (186) Q Consensus 88 l~l~p~~dg~~I~i~iP~l-T--~E~R~~lvK~~k~ 120 (186) .|+....++..+||+||++ | +|.|..|+..++. T Consensus 54 ~G~~i~~~~~~~ri~F~~p~~~~~~~r~~lv~l~~~ 89 (90) T 3dnh_A 54 DGIDLASASDLARLWFAERVETLKQFEKALAQLLKG 89 (90) T ss_dssp TEEEEECSSCEEEEECSSCCCSHHHHHHHHHHHTC- T ss_pred CCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHC T ss_conf 806899799899975899087999999999998642 No 24 >>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} (A:) Probab=42.12 E-value=25 Score=16.29 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 888999999999999999999999998 Q gi|254780776|r 155 ASLENDIQKITDSTIKNIDSFFEEKKK 181 (186) Q Consensus 155 ~~~~~~iq~lt~~~~~~id~~~~~Kek 181 (186) +.++++++.+|.+..-+-|+.++.||| T Consensus 8 ktlenqveeltekcslktdeflkakek 34 (60) T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEK 34 (60) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 889989999998714144999988999 No 25 >>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protein, nucleotide-binding, transcription regulation, activator, repressor; HET: PG4; 2.3A {Escherichia coli} (A:1-73) Probab=39.59 E-value=28 Score=16.03 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=43.7 Q ss_pred EEEEEECC-HHHHHHHHHHHHCCCCCCCCC-CCCC-EEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 89899659-678999999963178899845-4773-478861555689999999999998 Q gi|254780776|r 65 MLVVSVWD-KEMVASVERGIHESNLGLNPI-VEGQ-VLRIPVPETTEERRLALVKVAHAY 121 (186) Q Consensus 65 ~l~I~~~D-~~~ik~I~kAI~~s~l~l~p~-~dg~-~I~i~iP~lT~E~R~~lvK~~k~~ 121 (186) .|.|..+| ++.+..|.++|.+.+.|+.-. .++. .+.+.++-...+.=+.+...+++. T Consensus 2 ri~I~~~Dr~GlL~dI~~vis~~~~nI~~~~~~~~~~i~l~iev~~~~~L~~ii~~L~~i 61 (73) T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFESFSSLMAEIRRI 61 (73) T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTEEEEEECCCCHHHHHHHHHHHHHS T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 079983101544999999998669549999972464199933444657899999999987 No 26 >>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} (A:) Probab=38.96 E-value=28 Score=15.96 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=41.2 Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 615556899999999999988899999999-----------9999999999875358999789988899999999 Q gi|254780776|r 102 PVPETTEERRLALVKVAHAYAEKSKISVRN-----------IRRDGMDHLKKSRKSGKASEDMVASLENDIQKIT 165 (186) Q Consensus 102 ~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~-----------iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt 165 (186) .+|.+..|-|..+++.+....++|..-|+. .|..++.+++.++ .++.+++.++..+. T Consensus 27 ~i~~~~geerk~~i~~ie~~ldEA~ell~qMelE~r~~p~s~R~~~~~klR~Yk-------~el~~lk~e~~~~~ 94 (102) T 1vcs_A 27 RVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYK-------QEMGKLETDFKRSR 94 (102) T ss_dssp HGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHH-------HHHHHHHHHTHHHH T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH T ss_conf 877378367899999999868999999999999987298778999999999999-------99999999999877 No 27 >>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:182-274,A:722-813) Probab=38.59 E-value=5.7 Score=20.72 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=47.8 Q ss_pred HCCC-CC-CCHHHHCCEEEEE--CCCCCHHHHHHHHHC----CCCCEEEEEE-CCHH-----HHHHHHHHHHCCCCCCCC Q ss_conf 3138-88-8967824507885--586423998765120----5783898996-5967-----899999996317889984 Q gi|254780776|r 27 TLRT-GR-VSPSMLDLVKVEA--YGSHVPLNQVANVTV----LEPRMLVVSV-WDKE-----MVASVERGIHESNLGLNP 92 (186) Q Consensus 27 ~irt-Gr-asp~lld~i~V~~--~g~~~pL~~lA~Is~----~~~~~l~I~~-~D~~-----~ik~I~kAI~~s~l~l~p 92 (186) .+|+ |+ -+|.-|.++.|.. .|....|.++|+|.. .+...+.|.+ .+.. ....|..+|..+--|... T Consensus 52 ~i~~~g~~~~~~di~~i~I~~~~~G~~i~L~DVA~V~~g~~~~~~pe~~i~id~~ka~~~Gi~~~~i~~~l~~~~~G~~v 131 (185) T 2j8s_A 52 SIIAQTRLTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYV 131 (185) T ss_dssp EEECCCCCCSHHHHHTCEEEECTTSCEEEGGGTEEEEEEESCCCEEEEEEEECHHHHHHHTCCHHHHHHHHHHHHHCEEE T ss_pred EEEECCCCCCHHHHHCCEEEECCCCCEEECCCCEEEEECCCCCCCCEEEEEECHHHHHHCCCCCCCHHHHHHHHCCCCCC T ss_conf 99846775788887214456579995764144047742676778835999823234765699742033677876089741 Q ss_pred --C-CCCCE--EEEECCC Q ss_conf --5-47734--7886155 Q gi|254780776|r 93 --I-VEGQV--LRIPVPE 105 (186) Q Consensus 93 --~-~dg~~--I~i~iP~ 105 (186) . .++.. |+|.+|+ T Consensus 132 ~~~~~~~~~~~I~v~~~~ 149 (185) T 2j8s_A 132 NDFIDRGRVKKVYVMSEA 149 (185) T ss_dssp EEEEETTEEEEEEEEECG T ss_pred EEECCCCCCEEEEEECCC T ss_conf 011012540468974240 No 28 >>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3} (A:104-204) Probab=36.15 E-value=24 Score=16.42 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=51.3 Q ss_pred HHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 12057838989965967899999996317889984547734788615556899999999999988899 Q gi|254780776|r 58 VTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKS 125 (186) Q Consensus 58 Is~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~ 125 (186) ...-+++.+.|+||-+.....+..-+...++...- -..+-+..|.+.......+...++...+.. T Consensus 7 l~~l~~~ri~V~py~~~~~~~~~~~~~~~G~~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (101) T 2eq5_A 7 LALAYGRRVGVLNLTEETPKVIRSILGNNLIAEDH---PSGVSNTLDLLTDWGRREVINAAKRLKEKG 71 (101) T ss_dssp HHHTTCSSEEEECSSSCCCHHHHHHHGGGEEEEEC---CTTCCSGGGGGSHHHHHHHHHHHHHHHHTT T ss_pred HHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 99972786356650462699999999874010134---402210012457889999999999998669 No 29 >>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:) Probab=35.32 E-value=26 Score=16.23 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=35.3 Q ss_pred EEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCH Q ss_conf 99659678999999963178899845477347886155568 Q gi|254780776|r 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 (186) Q Consensus 68 I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~ 108 (186) =.+||+..-..||.|...-.-.+.....|..-.|.|..|++ T Consensus 37 W~~Yd~~~~~~iE~a~~~~~~~v~~~~~~~~Y~IDf~~m~Q 77 (99) T 1x4r_A 37 TQCFDKMTNMKLEVAWKAKKKDTVVQIHNQDFTVDLSTNTA 77 (99) T ss_dssp EEECCTTHHHHHHHHHHTTCSEEEEEETTEEEEEETTTTEE T ss_pred EEECCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCEE T ss_conf 68788799999999998199868999999899998444589 No 30 >>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B (C:176-266) Probab=34.15 E-value=34 Score=15.46 Aligned_cols=65 Identities=6% Similarity=-0.053 Sum_probs=39.4 Q ss_pred EEEEEECCHHHHHHHHHHHHCCCCCCCC-CCCCCEEEEEC--CC-----CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8989965967899999996317889984-54773478861--55-----568999999999999888999999 Q gi|254780776|r 65 MLVVSVWDKEMVASVERGIHESNLGLNP-IVEGQVLRIPV--PE-----TTEERRLALVKVAHAYAEKSKISV 129 (186) Q Consensus 65 ~l~I~~~D~~~ik~I~kAI~~s~l~l~p-~~dg~~I~i~i--P~-----lT~E~R~~lvK~~k~~~E~~K~~i 129 (186) -+-+++|++.-+..|-+|+..+--..+- ..++..|+|.+ || +|..-++.-.+.+++.++.+...| T Consensus 7 ~iel~c~~~dGIe~IK~AL~~a~~~~~~~~~~~~~ikI~~igaP~Y~i~~~~~d~k~g~~~L~~a~~~i~~~i 79 (91) T 3cw2_C 7 LITVRTNEPLGVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYRVDVVGTNPKEASEALNQIISNLIKIG 79 (91) T ss_dssp EEEECCCCTTHHHHHHHHHHHHHTTCTTTSCSEEEEECBBSSSSEEEEEEEESCHHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHH T ss_conf 9999978987689999999999861312234663289999769816999995899999999999999999999 No 31 >>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural genomics consortium, SGC; HET: SEP; 1.75A {Homo sapiens} PDB: 2o98_A* (A:1-111) Probab=32.58 E-value=36 Score=15.29 Aligned_cols=30 Identities=27% Similarity=0.102 Sum_probs=26.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 555689999999999998889999999999 Q gi|254780776|r 104 PETTEERRLALVKVAHAYAEKSKISVRNIR 133 (186) Q Consensus 104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR 133 (186) |.+|.|-|.-|.-.-|.....-|.+.|.+- T Consensus 36 ~~Ls~eERnLLSvayKn~ig~rR~swRvls 65 (111) T 2br9_A 36 VELTVEERNLLSVAYKNVIGARRASWRIIS 65 (111) T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 879999999999999998877999999998 No 32 >>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, structural genomics, structural genomics consortium, SGC; HET: SEP; 2.52A {Cryptosporidium parvum} (A:1-137) Probab=31.28 E-value=37 Score=15.15 Aligned_cols=74 Identities=16% Similarity=0.079 Sum_probs=48.5 Q ss_pred CCCCCEEEEEECC-HHHHHHHHHHHHCCCCCCCCCCCCCE-------EEE-E-CCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0578389899659-67899999996317889984547734-------788-6-155568999999999999888999999 Q gi|254780776|r 60 VLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQV-------LRI-P-VPETTEERRLALVKVAHAYAEKSKISV 129 (186) Q Consensus 60 ~~~~~~l~I~~~D-~~~ik~I~kAI~~s~l~l~p~~dg~~-------I~i-~-iP~lT~E~R~~lvK~~k~~~E~~K~~i 129 (186) .+..+.+++.+++ ++.+..-+..|.-+.|--+....+.. +.. . =|.||.|-|.-|.=.-|.....-|.+. T Consensus 8 ~~~~~~~~~~~~~~~~~m~ere~lv~~AklaeqaeRydDMv~~MK~vve~~~~~~eLt~EERnLLSvAYKNvIg~rR~sw 87 (137) T 2npm_A 8 TIRDSELNIKNSKMSDSVNARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSW 87 (137) T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHH T ss_conf 98877750544002421205899999999999985899999999999985158998999999999999976524059999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780776|r 130 RNIR 133 (186) Q Consensus 130 R~iR 133 (186) |-+- T Consensus 88 Riis 91 (137) T 2npm_A 88 RIIS 91 (137) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9997 No 33 >>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii} (A:) Probab=29.30 E-value=24 Score=16.44 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=33.5 Q ss_pred HHHHHCCCCCEEEEEECCHHHHHHH-HHHHHCCCCCCCCCCCCCEEEEECC Q ss_conf 7651205783898996596789999-9996317889984547734788615 Q gi|254780776|r 55 VANVTVLEPRMLVVSVWDKEMVASV-ERGIHESNLGLNPIVEGQVLRIPVP 104 (186) Q Consensus 55 lA~Is~~~~~~l~I~~~D~~~ik~I-~kAI~~s~l~l~p~~dg~~I~i~iP 104 (186) +.-+.++.++.+.+.|..+..+..- +..|.. .|.=.|...|+.|++++. T Consensus 4 V~k~~~~~A~~V~LaP~~~~~~~~~~~~~ik~-~l~grPv~~GD~i~v~~~ 53 (83) T 2jv2_A 4 HHHMEGVIMSELKLKPLPKVELPPDFVDVIRI-KLQGKTVRTGDVIGISIL 53 (83) T ss_dssp ----CCCCCCEEEEEESSSCCCCHHHHHHHHH-HHTTSEECTTCEEEEEET T ss_pred CCEEEEEEEEEEEEEECCCEECCCCHHHHHHH-HHCCCCCCCCCEEEEEEC T ss_conf 32057899878997006603048888999999-867987347999999853 No 34 >>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron reduction, phosphate complex; HET: SRM; 1.60A {Escherichia coli} (A:1-74,A:272-351) Probab=27.06 E-value=16 Score=17.69 Aligned_cols=85 Identities=12% Similarity=0.140 Sum_probs=52.6 Q ss_pred EEEEECCCCC---HHHHHHHHHCCCC----------CEEEEEECCHHHHHHHHHHHHCCCC-------CCCCCCCCC-EE Q ss_conf 0788558642---3998765120578----------3898996596789999999631788-------998454773-47 Q gi|254780776|r 41 VKVEAYGSHV---PLNQVANVTVLEP----------RMLVVSVWDKEMVASVERGIHESNL-------GLNPIVEGQ-VL 99 (186) Q Consensus 41 i~V~~~g~~~---pL~~lA~Is~~~~----------~~l~I~~~D~~~ik~I~kAI~~s~l-------~l~p~~dg~-~I 99 (186) ++|...|+.+ .|..||.|+-+=+ +++.+.--.+..+..|.+.+.++++ |+.+|.+|. .+ T Consensus 9 iRir~p~G~it~~ql~~i~~ia~~yg~~G~~~lTtRq~iql~gi~~~~~~~i~~~L~~~Gl~~~gt~~G~~~q~~g~~~v 88 (154) T 1aop_A 9 LRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATRIGWVKGIDDNWHL 88 (154) T ss_dssp EECCCGGGEEEHHHHHHHHHHHHHHBSSCCEEECTTSCEEECCBC-----CHHHHHHHTTCCCC--CCEEEECSTTEEEE T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE T ss_conf 99705788569999999999999838998599837704584788888999999999986998533512421122456427 Q ss_pred EEECCC--C----CHHHHHHHHHHHHHHHHHH Q ss_conf 886155--5----6899999999999988899 Q gi|254780776|r 100 RIPVPE--T----TEERRLALVKVAHAYAEKS 125 (186) Q Consensus 100 ~i~iP~--l----T~E~R~~lvK~~k~~~E~~ 125 (186) ++.+|- + |.|....+...|+++.-.. T Consensus 89 ~~~i~~G~i~~~~ta~ql~~ia~ia~~y~g~~ 120 (154) T 1aop_A 89 TLFIENGRILDYPARPLKTGLLEIAKIHKGDF 120 (154) T ss_dssp EECCGGGEECEETTEEHHHHHHHHHHHCSSEE T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE T ss_conf 89961577677552138999999987429819 No 35 >>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} (A:1-49,A:117-185,A:390-434) Probab=26.25 E-value=45 Score=14.57 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=60.9 Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCEEEEEECC---HHHHHHHHHHHHCCCC--CCCCCCCCCEEEEECCCCCHHHHHHH Q ss_conf 507885586423998765120578389899659---6789999999631788--99845477347886155568999999 Q gi|254780776|r 40 LVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD---KEMVASVERGIHESNL--GLNPIVEGQVLRIPVPETTEERRLAL 114 (186) Q Consensus 40 ~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D---~~~ik~I~kAI~~s~l--~l~p~~dg~~I~i~iP~lT~E~R~~l 114 (186) -+.|+|.|.+- ..++-.--++++.+.+ .|| .+.||.-..=|.+-+| |+--.++|..+.-.=|++..|.++++ T Consensus 18 ll~vdydgk~~--~avckl~d~e~~~~~~-~~d~~WEa~IKY~~nYlyD~gLIPGm~Y~v~~g~L~~v~~~i~~ev~~~L 94 (163) T 1s5j_A 18 LLQVDYDGKKG--KAVCKLFDKETQKIYA-LYDNTYEAHIKYFNNYMYDIGLIPGMPYVVKNGKLESVYLSLDEKDVEEI 94 (163) T ss_dssp EEEEEEETTTT--EEEEEEEETTTTEEEE-EECCSESCSSCHHHHHHHHHTCCTTSEEEEETTEEEECCCCCCHHHHHHH T ss_pred EEEEEEEEECC--EEEEEEEEECCCCEEE-EEECCECCCCCCHHEEEEECCCCCCEEEEECCCCCCCCCCCCCCCHHHHH T ss_conf 99869973389--7999999772891599-99578335888045057977997742799657744445455562004342 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999998889999999 Q gi|254780776|r 115 VKVAHAYAEKSKISVR 130 (186) Q Consensus 115 vK~~k~~~E~~K~~iR 130 (186) -+..+...+..+..+. T Consensus 95 k~~f~~~~~~~~~~a~ 110 (163) T 1s5j_A 95 KKAFADSDEMTRQMAV 110 (163) T ss_dssp HHHTTTSCHHHHHHHH T ss_pred CCCCCCCCHHHCCCCC T ss_conf 1334453012112211 No 36 >>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A (A:174-258) Probab=26.08 E-value=46 Score=14.55 Aligned_cols=42 Identities=26% Similarity=0.531 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHCCCCCCCCC------CCCC------EEEEECCCCCHHHHHHH Q ss_conf 678999999963178899845------4773------47886155568999999 Q gi|254780776|r 73 KEMVASVERGIHESNLGLNPI------VEGQ------VLRIPVPETTEERRLAL 114 (186) Q Consensus 73 ~~~ik~I~kAI~~s~l~l~p~------~dg~------~I~i~iP~lT~E~R~~l 114 (186) .+-++.|+.-+++-.+++||. ..|+ .+++-+|.+++|-|-.. T Consensus 10 es~i~~ie~~lr~kk~~inpryfalkylsgdpefy~egvklglpelseeeri~y 63 (85) T 3a1s_A 10 ESEIKKVENFLRDKKLRINPRYFALKYLSGDPEFYSEGVKLGLPELSEEERIGY 63 (85) T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHTTCHHHHHHHHHTTCCCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 999999999865423465649999999837859999988765788998846589 No 37 >>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A (A:) Probab=25.46 E-value=47 Score=14.47 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=38.1 Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 596789999999631788998454773478861555689999999999998 Q gi|254780776|r 71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 (186) Q Consensus 71 ~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~ 121 (186) .||+ -.+|.+|+..-+.+++-..-|..|.+.+..-+++..+++...+.+. T Consensus 17 lDPq-G~aI~~aL~~lG~~V~~VR~GK~iel~i~~~~~~~a~~v~~~c~kl 66 (84) T 2dgb_A 17 LDPQ-GRAVEGVLKDLGHPVEEVRVGKVLEIVFPAENLLEAEEKAKAXGAL 66 (84) T ss_dssp CCHH-HHHHHHHHHHTTCCCSEEEEEEEEEEEEECSSHHHHHHHHHHHHHH T ss_pred CCCH-HHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHH T ss_conf 2827-9999999997599754488566999998689989999999998887 No 38 >>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane; 3.30A {Escherichia coli} (A:1-73) Probab=24.70 E-value=43 Score=14.71 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=29.1 Q ss_pred EECCHHHHHHHHHHHHCCCC--CCCCCCCCCEEEEEC Q ss_conf 96596789999999631788--998454773478861 Q gi|254780776|r 69 SVWDKEMVASVERGIHESNL--GLNPIVEGQVLRIPV 103 (186) Q Consensus 69 ~~~D~~~ik~I~kAI~~s~l--~l~p~~dg~~I~i~i 103 (186) .||++..+....++|..+++ ++++..++..|.+.+ T Consensus 35 ~~~s~~~i~~~~~~L~~~g~F~~V~v~~~~~~l~i~V 71 (73) T 3efc_A 35 DTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQV 71 (73) T ss_dssp SCCCTHHHHHHHHHHHHHCCEEEEEEECCSSEEEEEE T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEE T ss_conf 9279899999999999679956899996399999999 No 39 >>1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} (A:220-303) Probab=23.58 E-value=51 Score=14.24 Aligned_cols=43 Identities=21% Similarity=0.140 Sum_probs=30.6 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 6789999999631788998454773478861555689999999999998 Q gi|254780776|r 73 KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 (186) Q Consensus 73 ~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~ 121 (186) .+.+..+..+..-.++.. ...|.|+.++|.+.++.+.+.+++. T Consensus 38 ~~~~~~iK~~l~~~G~~~------g~~R~Pl~~l~~~~~~~l~~~l~~~ 80 (84) T 1xxx_A 38 LGGVTLSKAGLRLQGIDV------GDPRLPQVAATPEQIDALAADMRAA 80 (84) T ss_dssp HCHHHHHHHHHHHTTCCC------CCCCTTSCCCCHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHCCCCC------CCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 778899999999779999------9959999999999999999999987 No 40 >>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16} (A:218-316) Probab=23.12 E-value=52 Score=14.18 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=28.0 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 89999999631788998454773478861555689999999999998 Q gi|254780776|r 75 MVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 (186) Q Consensus 75 ~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~ 121 (186) .+..+..++.-.++.. ...|.|+.++|.|.++++...+++. T Consensus 43 ~~~~iK~~l~~~G~~~------g~~R~Pl~~l~~~~~~~i~~~l~~~ 83 (99) T 3e96_A 43 NVVVIKEAMEMLRQNA------GVTRAPVNELSNEDKQLVTELLSSW 83 (99) T ss_dssp TTHHHHHHHHHTTCCC------BCCCTTCCCCCHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHCCCCC------CCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 7999999999779999------9969999889999999999999976 No 41 >>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structural genomics, JCSG, PSI, protein structure initiative; HET: UNL; 1.80A {Thermotoga maritima} (A:) Probab=22.88 E-value=52 Score=14.15 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=39.1 Q ss_pred EEEEEECCH-----HHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 898996596-----789999999631788998454773478861555689999999999998889 Q gi|254780776|r 65 MLVVSVWDK-----EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 (186) Q Consensus 65 ~l~I~~~D~-----~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~ 124 (186) -|.|.|..+ ..+..+.+.|.+|+|.+.+..-|++|.-.+..+ -++++.+.+.++. T Consensus 19 ~i~v~P~g~g~svs~~Va~~i~~i~~sGl~y~~~pmgT~IEG~~dev-----~~~vk~~he~~~~ 78 (106) T 1vk8_A 19 SIKVVPAVEDGRLHEVIDRAIEKISSWGXKYEVGPSNTTVEGEFEEI-----XDRVKELARYLEQ 78 (106) T ss_dssp EEEEEESSCGGGHHHHHHHHHHHHHTTCSCEEECSSCEEEEECHHHH-----HHHHHHHHHHHTT T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHH-----HHHHHHHHHHHHC T ss_conf 99997279998507999999999997499579779844898789999-----9999999999985 No 42 >>1sek_A Serpin K; serine protease inhibitor, protease; 2.10A {Manduca sexta} (A:1-86,A:207-269,A:357-378) Probab=22.68 E-value=30 Score=15.79 Aligned_cols=46 Identities=4% Similarity=-0.055 Sum_probs=37.0 Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHH Q ss_conf 3898996596789999999631788998454773478861555689 Q gi|254780776|r 64 RMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEE 109 (186) Q Consensus 64 ~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E 109 (186) .+++|-|.+...+..+++.+....+..--+.....+.|.+|+++-+ T Consensus 112 sM~iiLP~~~~~L~~l~~~Lt~~~l~~~~~~~~~~v~l~lPkf~i~ 157 (171) T 1sek_A 112 SMIIILPNQVDGITALEQKLKDPKALSRAEERLYNTEVKPFFFSLK 157 (171) T ss_dssp EEEEEEESSTTTHHHHHHHTTSTTHHHHHHTTCEEEEESCEEEEEE T ss_pred EEEEEECCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEECCEEEEEE T ss_conf 8999936862066899874136023344444240028999899999 No 43 >>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, cytoplasm, schiff base, carbohydrate metabolism; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 1hl2_A 1fdy_A 1fdz_A 1nal_1 (A:219-303) Probab=22.44 E-value=41 Score=14.88 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=29.8 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 89999999631788998454773478861555689999999999998889 Q gi|254780776|r 75 MVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 (186) Q Consensus 75 ~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~ 124 (186) .+..+..|+...+.. ++...|.|++++|.|-+..+...++...++ T Consensus 40 ~~~~iK~al~~~G~~-----~~g~~R~Pl~~l~~~~~~~i~~~l~~l~~~ 84 (85) T 2wkj_A 40 VFRGLKTVLHYMDVV-----SVPLCRKPFGPVDEKYLPELKALAQQLMQE 84 (85) T ss_dssp HHHHHHHHHHHTTSC-----SSCCCCTTSCCCCGGGHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHCCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 999999999985899-----999989998999999999999999999825 No 44 >>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus P2} (B:) Probab=21.68 E-value=55 Score=13.99 Aligned_cols=66 Identities=6% Similarity=-0.073 Sum_probs=39.2 Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCCCCC-CCCCEEEEEC--CC-----CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 389899659678999999963178899845-4773478861--55-----568999999999999888999999 Q gi|254780776|r 64 RMLVVSVWDKEMVASVERGIHESNLGLNPI-VEGQVLRIPV--PE-----TTEERRLALVKVAHAYAEKSKISV 129 (186) Q Consensus 64 ~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~-~dg~~I~i~i--P~-----lT~E~R~~lvK~~k~~~E~~K~~i 129 (186) --+-+++|++.-+..|-+|+..+--..+.. .++..|+|.+ || ++..-++.-.+.+++.++.....| T Consensus 8 ~~iel~c~~~dGIe~IK~aL~~a~~~~~~~~~~~~~ikI~~igaP~Y~i~~~~~d~k~g~~~l~~a~~~i~~~i 81 (93) T 2qn6_B 8 GLITVRTNEPLGVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYRVDVVGTNPKEASEALNQIISNLIKIG 81 (93) T ss_dssp EEEEEEECCTTTHHHHHHHHHHHHTTHHHHCTTEEEEEEEESSTTEEEEEEEESCHHHHHHHHHHHHHHHHHHH T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHHHHHH T ss_conf 99999977976299999999999872323467786189999679808999981799999999999999999999 No 45 >>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus} (A:) Probab=21.59 E-value=55 Score=13.98 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=33.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 55568999999999999888999999999999999999875358999789988899 Q gi|254780776|r 104 PETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 (186) Q Consensus 104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~ 159 (186) |+.+...|++++..|.....+-++.---.- +++ .+.+.++++++++..+.+ T Consensus 2 p~~~~~~Re~li~~Av~FL~dp~V~~sp~~----~K~-~FL~sKGLt~~EI~~al~ 52 (54) T 3ff5_A 2 PLGSPEFREPLIATAVKFLQNSRVRQSPLA----TRR-AFLKKKGLTDEEIDLAFQ 52 (54) T ss_dssp TTCCHHHHHHHHHHHHHHHHCTTGGGSCHH----HHH-HHHHHTTCCHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHCCHHHCCCCHH----HHH-HHHHHCCCCHHHHHHHHH T ss_conf 989885119999999999568212018689----999-999976999999999987 No 46 >>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae} (A:) Probab=21.41 E-value=32 Score=15.63 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=23.8 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 4773478861555689999999999998889 Q gi|254780776|r 94 VEGQVLRIPVPETTEERRLALVKVAHAYAEK 124 (186) Q Consensus 94 ~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~ 124 (186) .+|..|-||+.+|+.|-++-+-+..+...|+ T Consensus 34 ~nG~~i~VPl~kLS~~Dq~~ve~~t~~~~e~ 64 (68) T 2hbp_A 34 ANGVKIAVAADKLSNEDLAYVEKITGFSLEK 64 (68) T ss_dssp TTSCEEEEETTSBCHHHHHHHHHHHSCCCGG T ss_pred CCCEEEEEEHHHCCHHHHHHHHHHHCCCCHH T ss_conf 4997999795997998999999986366122 No 47 >>1ujr_A Hypothetical protein AK012080; WWE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} (A:) Probab=20.88 E-value=57 Score=13.88 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=33.8 Q ss_pred EEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCH Q ss_conf 99659678999999963178899845477347886155568 Q gi|254780776|r 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 (186) Q Consensus 68 I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~ 108 (186) =.+||+..-..||.|.....-++.....|..-.|-|..|++ T Consensus 40 W~~Y~~~~~~~IE~ay~~~~~~~~~~~~~~~Y~IDf~~m~Q 80 (110) T 1ujr_A 40 WWQYDERTSRELEDAFSKGKKNTEMLIAGFLYVADLENMVQ 80 (110) T ss_dssp EEECCSHHHHHHHHHHHHTCSEEEEEETTEEEEEETTTTEE T ss_pred EEECCHHHHHHHHHHHHCCCCEEEEEECCEEEEEEHHHCEE T ss_conf 69999899999999998599749999899467887214389 No 48 >>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} (A:184-308) Probab=20.45 E-value=58 Score=13.82 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=38.9 Q ss_pred EEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC-----CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89899659678999999963178899845477347886155-----5689999999999998889999999 Q gi|254780776|r 65 MLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE-----TTEERRLALVKVAHAYAEKSKISVR 130 (186) Q Consensus 65 ~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~-----lT~E~R~~lvK~~k~~~E~~K~~iR 130 (186) -+-+++|++.-|..|-+|+..+- .+++..-.-.|.+.=|| +|..-++.-.+.+++.++.....|. T Consensus 8 ~ieltc~~~dGIe~IK~AL~~a~-~~~~e~~~ikI~ligaP~Y~I~v~~~d~k~g~~~L~~a~~~i~~~i~ 77 (125) T 1q8k_A 8 DIEVACYGYEGIDAVKEALRAGL-NCSTENMPIKINLIAPPRYVMTTTTLERTEGLSVLSQAMAVIKEKIE 77 (125) T ss_dssp CCCEECCSTTTHHHHHHHHHHHH-HSSBTTBCEEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCHHHHHHHHHHHHH-HCCCCCCCEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999748867999999999998-61467887899997797069999837999999999999999999999 No 49 >>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A (A:358-657) Probab=20.08 E-value=59 Score=13.77 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=40.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 55689999999999998889999999999999999998753589997899888999999999999999999999998 Q gi|254780776|r 105 ETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKKK 181 (186) Q Consensus 105 ~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~~~~~~id~~~~~Kek 181 (186) ++.+..+++++|.++...++....|++.=++..+.+.. ...+.|+.=.+.+-.++|.+++.|+. T Consensus 235 ~~~k~~~ke~~k~l~q~~~e~~e~i~~av~e~fd~~e~-------------~v~e~l~ddI~s~~~el~~l~~qK~t 298 (300) T 2j69_A 235 ELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYER-------------EVSKRINDDIVSRKSELDNLVKQKQT 298 (300) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999999-------------99999999999999999999999999 No 50 >>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, structural genomics, structural genomics consortium; HET: MSE; 1.82A {Cryptosporidium parvum} (A:1-113) Probab=20.03 E-value=59 Score=13.76 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=24.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 555689999999999998889999999999 Q gi|254780776|r 104 PETTEERRLALVKVAHAYAEKSKISVRNIR 133 (186) Q Consensus 104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR 133 (186) |.||.|=|.-|.-.-|-..-.-|.+.|-+- T Consensus 41 ~eLs~EERnLLSvAYKNvvg~rR~swRii~ 70 (113) T 2o8p_A 41 SEFDDEERHLLTLCIKHKISDYRTXTSQVL 70 (113) T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 769989999999999887640399999999 Done!