Query gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 186
No_of_seqs 108 out of 1882
Neff 6.4
Searched_HMMs 23785
Date Mon May 30 13:20:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780776.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ise_A Ribosome recycling fact 100.0 0 0 403.1 21.6 184 1-186 2-185 (185)
2 1dd5_A Ribosome recycling fact 100.0 0 0 400.7 22.2 184 1-186 2-185 (185)
3 1is1_A Ribosome recycling fact 100.0 0 0 396.9 20.3 182 2-185 3-184 (185)
4 1wqg_A Ribosome recycling fact 100.0 0 0 395.2 21.3 182 2-185 3-184 (185)
5 1eh1_A Ribosome recycling fact 100.0 0 0 397.8 19.3 181 2-184 4-184 (185)
6 1ge9_A Ribosome recycling fact 100.0 0 0 375.8 17.6 175 7-185 9-183 (184)
7 3lhp_S 4E10_D0_1ISEA_004_N (T9 100.0 1.4E-30 6.1E-35 229.2 5.1 115 67-185 8-122 (123)
8 3lf9_A 4E10_D0_1IS1A_001_C (T1 99.9 1.7E-24 7.2E-29 187.6 9.1 110 69-185 3-112 (121)
9 1wih_A Mitochondrial ribosome 99.9 5.8E-25 2.4E-29 190.8 3.3 82 31-112 1-83 (84)
10 2o8p_A 14-3-3 domain containin 68.7 6 0.00025 19.5 4.4 31 104-134 41-71 (227)
11 2fqm_A Phosphoprotein, P prote 66.8 7.2 0.0003 19.0 4.6 41 86-126 2-48 (75)
12 1tz9_A Mannonate dehydratase; 62.8 8 0.00034 18.7 4.1 80 46-134 18-106 (367)
13 1qtw_A Endonuclease IV; DNA re 59.6 6.9 0.00029 19.1 3.3 66 60-126 33-99 (285)
14 2br9_A 14-3-3E, 14-3-3 protein 56.6 11 0.00045 17.8 7.4 73 104-176 36-109 (234)
15 3iqu_A 14-3-3 protein sigma; s 55.0 11 0.00048 17.6 6.2 73 104-176 39-112 (236)
16 2c1n_A 14-3-3 protein zeta/del 54.5 12 0.00049 17.6 5.6 31 104-134 47-77 (258)
17 1in0_A YAJQ protein, HI1034; a 52.9 5.9 0.00025 19.6 2.1 92 13-105 14-136 (163)
18 2x7v_A Probable endonuclease 4 47.9 7.3 0.00031 18.9 1.9 66 61-126 34-99 (287)
19 3gas_A Heme oxygenase; FMN-bin 46.2 14 0.0006 17.0 3.2 69 53-140 22-95 (259)
20 3htk_A Structural maintenance 42.1 18 0.00075 16.3 5.1 27 155-181 8-34 (60)
21 1o9d_A 14-3-3-like protein C; 38.8 20 0.00084 16.0 6.3 67 104-175 41-113 (260)
22 3ff5_A PEX14P, peroxisomal bio 37.4 21 0.00088 15.8 3.2 51 104-159 2-52 (54)
23 2f23_A Anti-cleavage anti-GREA 37.0 21 0.0009 15.8 9.3 66 105-178 6-71 (156)
24 2wxy_C Angiotensinogen, serpin 36.6 14 0.00057 17.1 1.8 60 62-121 306-366 (453)
25 2npm_A 14-3-3 domain containin 35.8 22 0.00094 15.6 6.2 67 104-176 62-135 (260)
26 3bdk_A D-mannonate dehydratase 34.7 23 0.00097 15.5 4.2 77 46-134 28-115 (386)
27 3c9u_A Thiamine monophosphate 32.6 25 0.001 15.3 5.7 103 20-126 6-148 (342)
28 1x4r_A PARP14 protein; WWE dom 31.5 23 0.00097 15.5 2.3 41 68-108 37-77 (99)
29 3m20_A 4-oxalocrotonate tautom 30.1 27 0.0012 15.0 4.5 28 98-125 2-29 (62)
30 2arz_A Hypothetical protein PA 26.8 29 0.0012 14.8 2.2 33 89-121 202-237 (247)
31 1l6x_B Minimized B-domain of p 25.3 18 0.00077 16.2 0.9 20 101-120 13-32 (34)
32 3f9t_A TDC, L-tyrosine decarbo 25.3 33 0.0014 14.4 4.8 25 46-70 184-208 (397)
33 1vcs_A Vesicle transport throu 22.8 37 0.0015 14.1 6.4 34 102-135 27-60 (102)
34 1xp3_A Endonuclease IV; NFO, D 20.9 40 0.0017 13.9 2.9 69 56-126 40-109 (307)
35 2qyw_A Vesicle transport throu 20.8 40 0.0017 13.9 7.3 32 104-135 39-71 (102)
36 3mcq_A Thiamine-monophosphate 20.7 41 0.0017 13.9 6.3 72 53-126 26-112 (319)
37 3dnh_A Uncharacterized protein 20.2 38 0.0016 14.1 1.7 27 94-120 228-257 (258)
No 1
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=100.00 E-value=0 Score=403.12 Aligned_cols=184 Identities=40% Similarity=0.647 Sum_probs=180.6
Q ss_pred CCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHH
Q ss_conf 94200789999999999999999975313888896782450788558642399876512057838989965967899999
Q gi|254780776|r 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVE 80 (186)
Q Consensus 1 ~~e~~dl~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~ 80 (186)
|+++ +.+++++|++++++|+.+|+++|+||+||++||+|+|+|||+++||++||+||+++|++|+|+|||++++++|+
T Consensus 2 i~~i--~~~~~~kM~~~v~~l~~el~~irtGrasp~ild~I~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~~~~I~ 79 (185)
T 1ise_A 2 ISDI--RKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVE 79 (185)
T ss_dssp CHHH--HHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCHHHHHEEEECCCCEEEEEECCHHHHHHHH
T ss_conf 4899--99999999999999999998773189997997934887799966488820346179865899737254499999
Q ss_pred HHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99631788998454773478861555689999999999998889999999999999999998753589997899888999
Q gi|254780776|r 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEND 160 (186)
Q Consensus 81 kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~ 160 (186)
+||++||||+||+++|++|+|||||||+|+|++++|.||+.+|+||++||++|+++++++|+++|.+++|||+.++++++
T Consensus 80 kAI~~s~l~l~p~~dg~~irv~iP~~T~E~R~~l~K~~k~~~E~aK~~iR~iR~~~~~~ik~~~k~~~iseD~~k~~~~~ 159 (185)
T 1ise_A 80 KAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDD 159 (185)
T ss_dssp HHHHTTCTTCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99986899999875887356259966799999999999999999999999999999999987532489886588889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999887449
Q gi|254780776|r 161 IQKITDSTIKNIDSFFEEKKKEIMHF 186 (186)
Q Consensus 161 iq~lt~~~~~~id~~~~~Kekell~~ 186 (186)
||++||+|++++|++++.||+|||+|
T Consensus 160 iq~ltd~~~~~id~~~~~KekEll~~ 185 (185)
T 1ise_A 160 VQKLTDAAIKKIEAALADKEAELMQF 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999997379
No 2
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=100.00 E-value=0 Score=400.71 Aligned_cols=184 Identities=41% Similarity=0.709 Sum_probs=180.6
Q ss_pred CCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHH
Q ss_conf 94200789999999999999999975313888896782450788558642399876512057838989965967899999
Q gi|254780776|r 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVE 80 (186)
Q Consensus 1 ~~e~~dl~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~ 80 (186)
|+++ +++++++|++++++|+.+|+++|+||+||++||+|+|++||+++||++||+|++++|++|+|+||||+++++|+
T Consensus 2 ~~~~--~~~~~~km~~~i~~l~~~l~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~v~~I~ 79 (185)
T 1dd5_A 2 VNPF--IKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIE 79 (185)
T ss_dssp CCHH--HHHHHHHHHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHH
T ss_pred CHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCHHHHHEEEECCCCEEEEECCCHHHHHHHH
T ss_conf 2789--99999999999999999998874189997995783785489876388831145078735765225232379999
Q ss_pred HHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99631788998454773478861555689999999999998889999999999999999998753589997899888999
Q gi|254780776|r 81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEND 160 (186)
Q Consensus 81 kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~ 160 (186)
+||++||||+||+++|++|+||||+||+|+|++++|.||+.+|+||++||++|++++++++++++.+++|||+.++++++
T Consensus 80 kAI~~s~l~l~p~~dg~~i~v~iP~~T~E~R~elvK~~k~~~E~aK~~iR~iR~~~~~~ik~~~k~~~iseD~~~~~~~~ 159 (185)
T 1dd5_A 80 KAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENE 159 (185)
T ss_dssp HHHHHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99986778999777898776208976699999999999999999999999999999999998764389986588899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999887449
Q gi|254780776|r 161 IQKITDSTIKNIDSFFEEKKKEIMHF 186 (186)
Q Consensus 161 iq~lt~~~~~~id~~~~~Kekell~~ 186 (186)
||++||+|++++|++++.||+|||+|
T Consensus 160 iq~ltd~~~~~id~~~~~KekEil~~ 185 (185)
T 1dd5_A 160 IQKLTDEFIEKLDEVFEIKKEEIMEF 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999997379
No 3
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1
Probab=100.00 E-value=0 Score=396.87 Aligned_cols=182 Identities=43% Similarity=0.696 Sum_probs=178.9
Q ss_pred CHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 42007899999999999999999753138888967824507885586423998765120578389899659678999999
Q gi|254780776|r 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVER 81 (186)
Q Consensus 2 ~e~~dl~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~k 81 (186)
+++ +.+++++|+++++||+++|+++|+||+||++||+|+|+|||+++||++||+||+++|++|+|+|||++++++|++
T Consensus 3 ~~i--~~~~~~kM~~~i~~l~~~l~~irtGra~p~lld~i~V~~yg~~~pL~~lA~Is~~~~~~l~I~~~D~~~v~~I~k 80 (185)
T 1is1_A 3 NEI--KKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEK 80 (185)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCHHHHHEEECCCCCEEEEEECCCCHHHHHHH
T ss_conf 889--999999999999999999987613899978838858977899650888200333898789886265001999999
Q ss_pred HHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 96317889984547734788615556899999999999988899999999999999999987535899978998889999
Q gi|254780776|r 82 GIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 (186)
Q Consensus 82 AI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~i 161 (186)
||++||||+||++||++|+|||||||+|+|++++|.||+.+|+||++||++|+++++++++++|++++|||+.++++++|
T Consensus 81 AI~~s~l~lnp~~dg~~irv~iP~lT~E~R~~lvK~ak~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~i 160 (185)
T 1is1_A 81 AIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEI 160 (185)
T ss_dssp HHHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99967899998878971321589888999999999999998999889999999999999865313899877888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999988744
Q gi|254780776|r 162 QKITDSTIKNIDSFFEEKKKEIMH 185 (186)
Q Consensus 162 q~lt~~~~~~id~~~~~Kekell~ 185 (186)
|++||+|++++|++++.||+|||+
T Consensus 161 q~ltd~~~~~id~~~~~KekEll~ 184 (185)
T 1is1_A 161 QKLTDVAVKKIDEVLAAKEKELME 184 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999998644
No 4
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=100.00 E-value=0 Score=395.25 Aligned_cols=182 Identities=36% Similarity=0.667 Sum_probs=178.8
Q ss_pred CHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 42007899999999999999999753138888967824507885586423998765120578389899659678999999
Q gi|254780776|r 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVER 81 (186)
Q Consensus 2 ~e~~dl~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~k 81 (186)
+++ +.+++++|+++++||+.+|+++|+||+||++||+|+|+|||+.+||++||+||+++|++|+|+|||++.+++|++
T Consensus 3 ~~~--~~~~~~~M~kai~~l~~~l~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~~~D~~~v~~I~k 80 (185)
T 1wqg_A 3 DEA--LFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIET 80 (185)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf 789--999999999999999999988742799979818858865898660899876315787668875251767999999
Q ss_pred HHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 96317889984547734788615556899999999999988899999999999999999987535899978998889999
Q gi|254780776|r 82 GIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 (186)
Q Consensus 82 AI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~i 161 (186)
||++||||+||+++|+.|+|||||||+|+|++++|.||+.+|+||++||++|++++++++++++++++|||+.++++++|
T Consensus 81 AI~~s~lglnp~~~g~~Iri~iP~lT~E~R~~l~K~~k~~~E~akv~iR~iR~~~~~~ik~~~k~~~iseD~~k~~~~~i 160 (185)
T 1wqg_A 81 AIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDL 160 (185)
T ss_dssp HHHHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99868889998757972352289899999999999999999999999999999999999874025899877888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999988744
Q gi|254780776|r 162 QKITDSTIKNIDSFFEEKKKEIMH 185 (186)
Q Consensus 162 q~lt~~~~~~id~~~~~Kekell~ 185 (186)
|++||+|++++|++++.||+|||+
T Consensus 161 q~ltd~~i~~id~~~~~Kekeil~ 184 (185)
T 1wqg_A 161 DKTTHQYVTQIDELVKHKEGELLE 184 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999998654
No 5
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6*
Probab=100.00 E-value=0 Score=397.77 Aligned_cols=181 Identities=43% Similarity=0.716 Sum_probs=177.8
Q ss_pred CHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 42007899999999999999999753138888967824507885586423998765120578389899659678999999
Q gi|254780776|r 2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVER 81 (186)
Q Consensus 2 ~e~~dl~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~k 81 (186)
+++ +++++++|++++++|+.+|+++|+||+||++||+|+|+|||+++||++||+|++++|++|+|+|||++++++|++
T Consensus 4 ~~i--~~~~~~~M~k~v~~l~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~~~D~~~vk~I~k 81 (185)
T 1eh1_A 4 KEL--YAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEK 81 (185)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
T ss_conf 999--999999999999999999986531899979928848846999766999976116898679884586656999999
Q ss_pred HHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 96317889984547734788615556899999999999988899999999999999999987535899978998889999
Q gi|254780776|r 82 GIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI 161 (186)
Q Consensus 82 AI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~i 161 (186)
||++||||+||+++|++|+|+||+||+|+|++++|.|++.+|+||++||++|++++++++++++++++|||+.++++++|
T Consensus 82 AI~~s~lg~~p~~dg~~Irv~iP~lT~E~R~elvK~~k~~~E~aKv~iR~iR~~~~~~ikk~~k~~~iseD~~k~~~~ei 161 (185)
T 1eh1_A 82 AIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEI 161 (185)
T ss_dssp HHSSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99977999998879872561698888999999999999999999999999999999998632044899878898999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998874
Q gi|254780776|r 162 QKITDSTIKNIDSFFEEKKKEIM 184 (186)
Q Consensus 162 q~lt~~~~~~id~~~~~Kekell 184 (186)
|++||+|++++|++++.||+|||
T Consensus 162 q~ltd~~~~~id~~~~~KekEil 184 (185)
T 1eh1_A 162 QKITDEFIAKADQLAEKKEQEIL 184 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999865
No 6
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=100.00 E-value=0 Score=375.80 Aligned_cols=175 Identities=36% Similarity=0.656 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 89999999999999999975313888896782450788558642399876512057838989965967899999996317
Q gi|254780776|r 7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHES 86 (186)
Q Consensus 7 l~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s 86 (186)
+++++++|+++++||+.+|+++|+||+||++||+|+|+|||+++||++||+|++++|++|+|+|||++.+++|++|| .|
T Consensus 9 ~~~~~~~m~k~i~~l~~el~~irtGRa~p~ild~i~V~~~g~~~pL~~lA~Isv~~~~~l~i~~~D~~~v~~I~kAi-~s 87 (184)
T 1ge9_A 9 FKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAI-RE 87 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCHHHHHHEECCCCCEEEEECCCHHHHHHHHHHH-HH
T ss_conf 99999999999999999998772378997881874886489855287731222278867998526242289999999-85
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88998454773478861555689999999999998889999999999999999998753589997899888999999999
Q gi|254780776|r 87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD 166 (186)
Q Consensus 87 ~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~ 166 (186)
+||+||+++|+.|+||||+||+|+|++++|.||+.+|+||++||++|+++++++|+++ ++|||+.++++++||++||
T Consensus 88 ~l~l~p~~~g~~Irv~iP~lT~E~R~~l~K~ak~~~E~aK~~iR~iR~~~~~~lKk~~---~iseD~~k~~~~~iq~ltd 164 (184)
T 1ge9_A 88 ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE---GISEDEKKRALERLQKLTD 164 (184)
T ss_dssp HHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST---TCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHH
T ss_conf 4799978889722046886449999999999888699999999998799999888753---7987888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999988744
Q gi|254780776|r 167 STIKNIDSFFEEKKKEIMH 185 (186)
Q Consensus 167 ~~~~~id~~~~~Kekell~ 185 (186)
+|++++|++++.||||||+
T Consensus 165 ~~~~~id~~~~~KekEll~ 183 (184)
T 1ge9_A 165 KYIDEINKLMEAKEKEIMS 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999998636
No 7
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=99.96 E-value=1.4e-30 Score=229.17 Aligned_cols=115 Identities=23% Similarity=0.309 Sum_probs=110.4
Q ss_pred EEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89965967899999996317889984547734788615556899999999999988899999999999999999987535
Q gi|254780776|r 67 VVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKS 146 (186)
Q Consensus 67 ~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~ 146 (186)
+|+|||++.+..|++||.+|+||+||+++| |+||+| |+|+|++|+|.|++.+|+||++||++|+++++.++++++.
T Consensus 8 si~~~~k~~~~~iekai~~~~lgl~p~~~g--Irlp~P--T~E~R~elvK~ak~~~E~aKvsIRniRrd~~~~iKk~~k~ 83 (123)
T 3lhp_S 8 SISDIRKDAEVRMDKAVEAFKNKLDKFKAA--VRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKD 83 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCC--EECCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 677203437999999999756899951161--058999--9899999999999999999999999999999999986523
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899978998889999999999999999999999988744
Q gi|254780776|r 147 GKASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 (186)
Q Consensus 147 ~~iseD~~~~~~~~iq~lt~~~~~~id~~~~~Kekell~ 185 (186)
+++|||+.++++++||++||+|++++|++++.||+|||+
T Consensus 84 k~iseDd~k~~e~eiQklTdk~i~~id~l~~~KEkEIme 122 (123)
T 3lhp_S 84 KEINWFDISQSLWDVQKLTDAAIKKIEAALADMEAWLTQ 122 (123)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 899989998899999999999999999999999999847
No 8
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=99.91 E-value=1.7e-24 Score=187.61 Aligned_cols=110 Identities=30% Similarity=0.406 Sum_probs=100.5
Q ss_pred EECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 96596789999999631788998454773478861555689999999999998889999999999999999998753589
Q gi|254780776|r 69 SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGK 148 (186)
Q Consensus 69 ~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~ 148 (186)
+++..+....+.+||..+.+|++|.++| |+||+|+|++|+|.|++.+|+||++|||+||++++.+++++|+++
T Consensus 3 ~~i~~~~~~~~~k~i~~~~~~~~~i~t~-------pa~TeErRkeLvK~ak~~~E~aKVsIRniRrda~~~iKk~~K~~~ 75 (121)
T 3lf9_A 3 NEIKKDAQERMDKSVEALKNNLSKVRTG-------GGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKE 75 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCS-------SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 3899989999897799998588510389-------999789999999999999999999999999999999997624478
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9978998889999999999999999999999988744
Q gi|254780776|r 149 ASEDMVASLENDIQKITDSTIKNIDSFFEEKKKEIMH 185 (186)
Q Consensus 149 iseD~~~~~~~~iq~lt~~~~~~id~~~~~Kekell~ 185 (186)
+|||+.++++++||++||+|++++|++++.||+|||+
T Consensus 76 isEDd~k~~e~eIQklTd~~i~~Id~l~~~KEkEIm~ 112 (121)
T 3lf9_A 76 VNWFDISQALWEIQKLTDVAVKKIDEVLAAKEKELME 112 (121)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9988998789999999999999999999999999999
No 9
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=99.90 E-value=5.8e-25 Score=190.81 Aligned_cols=82 Identities=32% Similarity=0.545 Sum_probs=80.0
Q ss_pred CCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 888967824507885586423998765120578389899659-6789999999631788998454773478861555689
Q gi|254780776|r 31 GRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEE 109 (186)
Q Consensus 31 Grasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D-~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E 109 (186)
|||||+|||+|+|+|||+++||+|||+|+++++++|.|+||| ++.+++|++||++||||+||++||++|||+||+||.|
T Consensus 1 Gra~~~lld~I~V~~yg~~~pL~qlA~Isv~~~~~l~I~~~D~~~~i~~i~kAI~~snLglnP~~dG~~Iri~iP~lTt~ 80 (84)
T 1wih_A 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG 80 (84)
T ss_dssp CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred CCCCHHHCCCEEEEECCCCCCHHHCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 98895783865997789856678804766278766898603442015899999985799988540798999878989777
Q ss_pred HHH
Q ss_conf 999
Q gi|254780776|r 110 RRL 112 (186)
Q Consensus 110 ~R~ 112 (186)
.|.
T Consensus 81 ~~~ 83 (84)
T 1wih_A 81 PSS 83 (84)
T ss_dssp SCC
T ss_pred CCC
T ss_conf 678
No 10
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, structural genomics, structural genomics consortium; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=68.65 E-value=6 Score=19.51 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5556899999999999988899999999999
Q gi|254780776|r 104 PETTEERRLALVKVAHAYAEKSKISVRNIRR 134 (186)
Q Consensus 104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~ 134 (186)
|.||.|-|.-+.-.-|.....-|.++|.+-.
T Consensus 41 ~eLs~eERnLlsvayKn~i~~~R~s~R~l~~ 71 (227)
T 2o8p_A 41 SEFDDEERHLLTLCIKHKISDYRTMTSQVLQ 71 (227)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899899999999998865121999999999
No 11
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=66.83 E-value=7.2 Score=18.99 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=32.2
Q ss_pred CCCCCC-CC----CCCCEEEEECCC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 788998-45----477347886155-568999999999999888999
Q gi|254780776|r 86 SNLGLN-PI----VEGQVLRIPVPE-TTEERRLALVKVAHAYAEKSK 126 (186)
Q Consensus 86 s~l~l~-p~----~dg~~I~i~iP~-lT~E~R~~lvK~~k~~~E~~K 126 (186)
|.++++ |. -.|.++++.+|. +|+|.+.+..+..+..+|-+|
T Consensus 2 ~~~dW~qP~l~~ng~~KsL~Lf~P~gLt~~Q~~QW~~TIeAv~qSsK 48 (75)
T 2fqm_A 2 SHMDWKQPELESDEHGKTLRLTLPEGLSGEQKSQWMLTIKAVVQSAK 48 (75)
T ss_dssp ---CCCCCEEEEETTEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 86655685132379972698737877226789999999999986503
No 12
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.90A {Enterococcus faecalis V583} SCOP: c.1.15.6
Probab=62.77 E-value=8 Score=18.67 Aligned_cols=80 Identities=16% Similarity=0.409 Sum_probs=48.0
Q ss_pred CC---CCCHHHHHHHH-HCCCCC--EEEE---EECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 58---64239987651-205783--8989---965967899999996317889984547734788615556899999999
Q gi|254780776|r 46 YG---SHVPLNQVANV-TVLEPR--MLVV---SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVK 116 (186)
Q Consensus 46 ~g---~~~pL~~lA~I-s~~~~~--~l~I---~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK 116 (186)
|| .+++|.+|.|+ .+.+-- ...+ .+|+...+....+.|.+++|.|+..-. +|++ +.... -..
T Consensus 18 ~g~~~d~v~l~~irQ~~G~~giv~~l~~~~~GevW~~~~i~~~k~~ie~~GL~~~vVEs-----~pvh---e~Ik~-g~~ 88 (367)
T 1tz9_A 18 YGAAGDAIPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLALLGIES-----VAIH---DAIKA-GTD 88 (367)
T ss_dssp CCTTTCCSCHHHHTTSTTCCEEEECCSSSCTTCCCCHHHHHHHHHHHHHTTCEEEEECS-----CCCC---HHHHH-TCS
T ss_pred CCCCCCCCCHHHHHCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-----CCCH---HHHHC-CCH
T ss_conf 08999962789874536973277745489999989999999999999976996998737-----8847---98864-986
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999988899999999999
Q gi|254780776|r 117 VAHAYAEKSKISVRNIRR 134 (186)
Q Consensus 117 ~~k~~~E~~K~~iR~iR~ 134 (186)
.-.+..|.++.+|||+-+
T Consensus 89 ~~d~~Ie~~~~sirnla~ 106 (367)
T 1tz9_A 89 QRDHYIDNYRQTLRNLGK 106 (367)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 699999999999999996
No 13
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=59.64 E-value=6.9 Score=19.13 Aligned_cols=66 Identities=6% Similarity=-0.006 Sum_probs=44.1
Q ss_pred CCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 05783898996596789999999631788998454-77347886155568999999999999888999
Q gi|254780776|r 60 VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIV-EGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 (186)
Q Consensus 60 ~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~-dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K 126 (186)
+.+||.+...++++..+..+.+++...++...+.. -+.. .+.+-.+..+.|+..++..+...+-|+
T Consensus 33 ~~~p~~w~~~~~~~~~~~~~r~~~~~~~l~~~~~~~h~py-~~nl~s~~~~~r~~si~~~~~~l~~a~ 99 (285)
T 1qtw_A 33 TKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQILPHDSY-LINLGHPVTEALEKSRDAFIDEMQRCE 99 (285)
T ss_dssp SSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGGBCCBCCT-TCCTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8997777889999999999999999829997359984786-556478887999999999999999999
No 14
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural genomics consortium, SGC; HET: SEP; 1.75A {Homo sapiens} PDB: 2o98_A* 3m50_A* 3m51_A*
Probab=56.63 E-value=11 Score=17.79 Aligned_cols=73 Identities=18% Similarity=0.111 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 555689999999999998889999999999999999998-7535899978998889999999999999999999
Q gi|254780776|r 104 PETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKK-SRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 (186)
Q Consensus 104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk-~~k~~~iseD~~~~~~~~iq~lt~~~~~~id~~~ 176 (186)
|.+|.|-|.-+.-..|...-..|.++|.+..--.+.-.. .......-++-..+.++++..+-++.+.-||..+
T Consensus 36 ~eLt~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~~~~~~~~~~~y~~ki~~EL~~~C~eii~lid~~L 109 (234)
T 2br9_A 36 VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHL 109 (234)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999987743249999999999986422386578999999999999999999988999999743
No 15
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} PDB: 3iqj_A* 3iqv_A* 3lw1_A* 1ywt_A* 1yz5_A 2v7d_A* 2o02_A 1qja_A* 1a37_A 1a38_A 1a4o_A* 1ib1_A* 1qjb_A* 2wh0_A* 3cu8_A*
Probab=55.01 E-value=11 Score=17.61 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5556899999999999988899999999999999999-987535899978998889999999999999999999
Q gi|254780776|r 104 PETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHL-KKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFF 176 (186)
Q Consensus 104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~i-kk~~k~~~iseD~~~~~~~~iq~lt~~~~~~id~~~ 176 (186)
|.+|.|-|.-+.-..|...-.-|.+.|.+..--.+.- ++.......-.+-..+.++++..+-++.+.-||..+
T Consensus 39 ~eLt~eERnLlsvayKn~i~~~R~s~R~l~~ie~~~~~~~~~~~~~~i~~y~~ki~~EL~~~C~eii~lid~~L 112 (236)
T 3iqu_A 39 EELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHL 112 (236)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 98999999999999987541339999999999998752286688999999999999999998721789999862
No 16
>2c1n_A 14-3-3 protein zeta/delta; signaling protein/complex, phosphorylation, 14-3-3, acetylation, nucleosome, signaling protein; HET: SEP; 2.0A {Homo sapiens} SCOP: a.118.7.1 PDB: 2c1j_A* 2bq0_A 2c23_A 2btp_A* 2c63_A* 2c74_A* 2b05_A*
Probab=54.46 E-value=12 Score=17.56 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5556899999999999988899999999999
Q gi|254780776|r 104 PETTEERRLALVKVAHAYAEKSKISVRNIRR 134 (186)
Q Consensus 104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~ 134 (186)
|.+|.|-|.-|.-.-|...-.-|.+.|.+..
T Consensus 47 ~eLt~EERnLLsvayKn~i~~~R~s~R~l~~ 77 (258)
T 2c1n_A 47 AELSNEERNLLSVAYKNVVGARRSSWRVVSS 77 (258)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999998863224999999999
No 17
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=52.94 E-value=5.9 Score=19.56 Aligned_cols=92 Identities=12% Similarity=0.269 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHH---CCCCCCCHHHH---CCEEEEECCCCCHHHHHHHHH--------------------CCCCCEE
Q ss_conf 999999999999753---13888896782---450788558642399876512--------------------0578389
Q gi|254780776|r 13 RMGDTISFLKKDMMT---LRTGRVSPSML---DLVKVEAYGSHVPLNQVANVT--------------------VLEPRML 66 (186)
Q Consensus 13 ~m~~~i~~l~~el~~---irtGrasp~ll---d~i~V~~~g~~~pL~~lA~Is--------------------~~~~~~l 66 (186)
.+..|++...+|+++ ++.-.++-.+= +.|.+.+ .+.+.|.++-.|- ..++.++
T Consensus 14 Ev~NAv~qa~rEi~~RyDFKgs~~~iel~~~~~~i~l~a-~~e~kl~~v~diL~~kl~KR~i~~k~l~~~~~e~~sg~~~ 92 (163)
T 1in0_A 14 EVRNAVENANRVLSTRYDFRGVEAVIELNEKNETIKITT-ESDFQLEQLIEILIGSCIKRGIEHSSLDIPAESEHHGKLY 92 (163)
T ss_dssp HHHHHHHHHHHHHTTBGGGTTCCEEEEEETTTTEEEEEE-SCHHHHHHHHHHHHHHHHHTTCCGGGEECCSSCEEETTEE
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf 999999999988741225699985388815773699970-9799999999999999861699954322356422478718
Q ss_pred --EEEE---CCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf --8996---59678999999963178899845477347886155
Q gi|254780776|r 67 --VVSV---WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPE 105 (186)
Q Consensus 67 --~I~~---~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~ 105 (186)
.|+. -|....+.|.+.|.++.+-++++..|..+||+=.+
T Consensus 93 rq~i~lk~GI~~e~AKkI~k~IKdsklKVqa~IQGd~vRVtgKk 136 (163)
T 1in0_A 93 SKEIKLKQGIETEMAKKITKLVKDSKIKVQTQIQGEQVRVTGKS 136 (163)
T ss_dssp EEEEEECCSCCHHHHHHHHHHHHHHTCSEEEEEETTEEEEEESC
T ss_pred EEEEHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCC
T ss_conf 99864752248889999999997138840599758378863688
No 18
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=47.93 E-value=7.3 Score=18.93 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=40.5
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 578389899659678999999963178899845477347886155568999999999999888999
Q gi|254780776|r 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSK 126 (186)
Q Consensus 61 ~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K 126 (186)
.+||.+....+++..+..+.+++..+++.+....-...-.+++.-+..+.|+..++..++.++-|+
T Consensus 34 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~nl~~~d~~~r~~~i~~l~~~i~~a~ 99 (287)
T 2x7v_A 34 HNARSWSAKLPSDEAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVELLKKEVEICR 99 (287)
T ss_dssp CCCSSSCCCCCCHHHHHHHHHHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 998788889999999999999999859984278742631463059999999999999999999999
No 19
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=46.16 E-value=14 Score=16.96 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=37.5
Q ss_pred HHHHHHH-CCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEECCCCC---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9876512-0578389899659678999999963178899845477-34788615556---89999999999998889999
Q gi|254780776|r 53 NQVANVT-VLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEG-QVLRIPVPETT---EERRLALVKVAHAYAEKSKI 127 (186)
Q Consensus 53 ~~lA~Is-~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg-~~I~i~iP~lT---~E~R~~lvK~~k~~~E~~K~ 127 (186)
+..+.+. +.+++++.|.++ |+.-..+| ..+||+||++- ++.|..+|+.++..-.+ .
T Consensus 22 ~~~~~~~~~~~a~m~~iD~~-----------------G~~l~~~g~~~~Ri~F~~~~~~~~~~r~~lV~l~~~a~~~--~ 82 (259)
T 3gas_A 22 KKFGQVHHAENVAFKSVDSQ-----------------GIVIGYNNNQTLRIEFNHEVKDPKDYKNATIELCQSVEKT--H 82 (259)
T ss_dssp HHHHCCCSCCSCEEEEEETT-----------------EEEEEETTTEEEEEECSSCCCCGGGHHHHHHHHHHHHHHT--T
T ss_pred HHHCCCCCCCCEEEEEEECC-----------------CCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH--H
T ss_conf 98469888884599998217-----------------0689976987899748880889999999999999852555--6
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780776|r 128 SVRNIRRDGMDHL 140 (186)
Q Consensus 128 ~iR~iR~~~~~~i 140 (186)
.+..++.++..-+
T Consensus 83 ~~~~i~~ei~~fl 95 (259)
T 3gas_A 83 DLKGVEEEVKAFK 95 (259)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 5899999999999
No 20
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=42.12 E-value=18 Score=16.29 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888999999999999999999999998
Q gi|254780776|r 155 ASLENDIQKITDSTIKNIDSFFEEKKK 181 (186)
Q Consensus 155 ~~~~~~iq~lt~~~~~~id~~~~~Kek 181 (186)
+.++++++.+|.+..-+-|+.++.|||
T Consensus 8 ktlenqveeltekcslktdeflkakek 34 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEK 34 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 889989999998714144999988999
No 21
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=38.84 E-value=20 Score=15.95 Aligned_cols=67 Identities=24% Similarity=0.218 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 555689999999999998889999999999999999998753589------997899888999999999999999999
Q gi|254780776|r 104 PETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGK------ASEDMVASLENDIQKITDSTIKNIDSF 175 (186)
Q Consensus 104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~------iseD~~~~~~~~iq~lt~~~~~~id~~ 175 (186)
|.||.|-|.-|.-.-|...-.-|.+.|.+..--.+ ....+ +-++-.++.+++|..+-++.+.-||..
T Consensus 41 ~eLs~eERnLLsvayKn~i~~~R~s~R~i~~ie~k-----~~~~~~~~~~~~i~~y~~ki~~EL~~~C~eii~lid~~ 113 (260)
T 1o9d_A 41 EELTVEERNLLSVAYKNVIGARRASWRIISSIEQK-----EESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAK 113 (260)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87999999999999987633109999999899987-----75028778899999999999999999999999999986
No 22
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=37.43 E-value=21 Score=15.80 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 55568999999999999888999999999999999999875358999789988899
Q gi|254780776|r 104 PETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEN 159 (186)
Q Consensus 104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~ 159 (186)
|..|.+.|++++..|......-++.=- -..+=....+.++++++++..+-+
T Consensus 2 p~~s~~~Re~li~~Av~FL~~p~V~~s-----p~~~K~~FL~sKGLt~~EI~~A~~ 52 (54)
T 3ff5_A 2 PLGSPEFREPLIATAVKFLQNSRVRQS-----PLATRRAFLKKKGLTDEEIDLAFQ 52 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHCTTGGGS-----CHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHCC-----CHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 989985109999999999568413008-----789999999986999999999987
No 23
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus HB27} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 2etn_A
Probab=36.97 E-value=21 Score=15.76 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55689999999999998889999999999999999998753589997899888999999999999999999999
Q gi|254780776|r 105 ETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEE 178 (186)
Q Consensus 105 ~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~~~~~~id~~~~~ 178 (186)
+||.+-.+.|.+.+.. +|..|.+....+......+..+|+-.+.+-++=|...+..+..++..++.
T Consensus 6 ~lT~~g~~~L~~EL~~--------l~~~~~e~~~~i~~a~~~gDl~ENaeY~aAke~q~~~e~rI~~Le~~L~~ 71 (156)
T 2f23_A 6 KLTKAGYERLMQQLER--------ERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSR 71 (156)
T ss_dssp EECHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0299999999999999--------88777889999999997378642176999999999999999999999986
No 24
>2wxy_C Angiotensinogen, serpin A8; glycoprotein, hypertension, vasoconstrictor, renin, serpins, vasoactive, hormone; 2.10A {Mus musculus} PDB: 2wxx_A 2wy0_C 2wxz_A 2wxz_C 2wy1_A
Probab=36.64 E-value=14 Score=17.11 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=44.2
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCC-CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7838989965967899999996317889-98454773478861555689999999999998
Q gi|254780776|r 62 EPRMLVVSVWDKEMVASVERGIHESNLG-LNPIVEGQVLRIPVPETTEERRLALVKVAHAY 121 (186)
Q Consensus 62 ~~~~l~I~~~D~~~ik~I~kAI~~s~l~-l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~ 121 (186)
+..+++|-|.+...+..++..+....+. |.-.-....+.|.+|+.+-+..-+|...++++
T Consensus 306 ~~sm~iiLP~~~~~L~~le~~L~~~~l~~~~~~~~~~~v~l~lPkF~i~~~~dL~~~L~~l 366 (453)
T 2wxy_C 306 RATLLLIQPHCISDLDRVEALIFQNDLLTWIENPPPRAIRLTLPQLEIRGSYNLQDLLAED 366 (453)
T ss_dssp SEEEEEEEESSGGGHHHHHHHHTC-CCCTTCCCCCCEEEEEEEECEEEEEEEEHHHHHHHT
T ss_pred CEEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHCCCEEEEEEECCEEEEEEECHHHHHHHC
T ss_conf 3699998177566378887640789999999746515899973018999862069999875
No 25
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, structural genomics, structural genomics consortium, SGC; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=35.82 E-value=22 Score=15.64 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 555689999999999998889999999999999999998753589997-------8998889999999999999999999
Q gi|254780776|r 104 PETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASE-------DMVASLENDIQKITDSTIKNIDSFF 176 (186)
Q Consensus 104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~ise-------D~~~~~~~~iq~lt~~~~~~id~~~ 176 (186)
|.||.|-|.-|.-.-|...-.-|.+.|.+-.- ...+.. .-++ +-..+.+++|..+-++.+.-||..+
T Consensus 62 ~eLs~EERnLLSvayKn~i~~rR~s~R~l~si-----eqke~~-~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 135 (260)
T 2npm_A 62 EELTVEERNLLSVAYKNAVGSRRSSWRIISSV-----EQKEHS-RNAEDASKMCGKYRSKVEAELTDICNDILTMLDKHL 135 (260)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHH-----HHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998999999999965523208999999799-----997752-285688999999999999999999988999998652
No 26
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=34.73 E-value=23 Score=15.52 Aligned_cols=77 Identities=25% Similarity=0.441 Sum_probs=47.6
Q ss_pred CC--CCCHHHHHHHH-HCCCCCEEE-----E---EECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 58--64239987651-205783898-----9---9659678999999963178899845477347886155568999999
Q gi|254780776|r 46 YG--SHVPLNQVANV-TVLEPRMLV-----V---SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLAL 114 (186)
Q Consensus 46 ~g--~~~pL~~lA~I-s~~~~~~l~-----I---~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~l 114 (186)
|| ++++|.++-|| .+.+ ++ | .+|+...+....+-|.+++|.|.... .+|. .+.-+..
T Consensus 28 ~g~~d~v~l~~irq~~g~~g---iv~alh~~p~GevW~~~~i~~~k~~ie~~GL~~~vVE-------s~pv-he~Ik~g- 95 (386)
T 3bdk_A 28 YGKKDPVTLEEIKAIPGMQG---IVTAVYDVPVGQAWPLENILELKKMVEEAGLEITVIE-------SIPV-HEDIKQG- 95 (386)
T ss_dssp CCTTCSSCHHHHHTSTTCCE---EEECCCSSCSSSCCCHHHHHHHHHHHHTTTCEEEEEE-------CCCC-CHHHHTT-
T ss_pred CCCCCCEEHHHHHCCCCCCE---EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE-------CCCC-HHHHHCC-
T ss_conf 69989574998424179963---2220458899997999999999999997498699996-------8783-8898649-
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999988899999999999
Q gi|254780776|r 115 VKVAHAYAEKSKISVRNIRR 134 (186)
Q Consensus 115 vK~~k~~~E~~K~~iR~iR~ 134 (186)
.-.-.+..|.++.+|||+=+
T Consensus 96 ~~~rd~~Ie~~~~sirnla~ 115 (386)
T 3bdk_A 96 KPNRDALIENYKTSIRNVGA 115 (386)
T ss_dssp CTTHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 98699999999999999997
No 27
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=32.61 E-value=25 Score=15.29 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=65.1
Q ss_pred HHHHHHHHCC--CCCCCHHHHCCEEEEECCCCCHHHHHH----------------------HHHCCCCCEEEEE------
Q ss_conf 9999975313--888896782450788558642399876----------------------5120578389899------
Q gi|254780776|r 20 FLKKDMMTLR--TGRVSPSMLDLVKVEAYGSHVPLNQVA----------------------NVTVLEPRMLVVS------ 69 (186)
Q Consensus 20 ~l~~el~~ir--tGrasp~lld~i~V~~~g~~~pL~~lA----------------------~Is~~~~~~l~I~------ 69 (186)
|...+.+.+. .|.++..+.++|.+..++. +.|++|+ -|...+ ..++++
T Consensus 6 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~lgE~~lI~~~~~~~~~~~iGDDaAvi~~~~-~~lvvstD~~~e 83 (342)
T 3c9u_A 6 HHHHDITSLYKKAGSAAAVLEENLYFQGSFT-MRLKELGEFGLIDLIKKTLESKVIGDDTAPVEYCS-KKLLLTTDVLNE 83 (342)
T ss_dssp -----------------------------CC-CBHHHHCHHHHHHHHHHHHTCSSTTSSSEEEEETT-EEEEEEEEEEEB
T ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHHCCCCC-CCHHHCCHHHHHHHHHHHCCCCCCCCCEEEEECCC-CEEEEEECCCCC
T ss_conf 4302456763263588999999877525687-66142687999999985278999987876896099-809999466787
Q ss_pred ------ECCHHHHHHHHHHHHCCC---CCCCCCCCCCEEEEECCC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf ------659678999999963178---899845477347886155-568999999999999888999
Q gi|254780776|r 70 ------VWDKEMVASVERGIHESN---LGLNPIVEGQVLRIPVPE-TTEERRLALVKVAHAYAEKSK 126 (186)
Q Consensus 70 ------~~D~~~ik~I~kAI~~s~---l~l~p~~dg~~I~i~iP~-lT~E~R~~lvK~~k~~~E~~K 126 (186)
.|+|..+....-+..-|| +|-.|. +-++.+.+|+ .+.+.=+++++.+.+.|+++-
T Consensus 84 ~~hf~~~~~p~~iG~~av~~~vsDIaamGa~P~--~~l~sl~lp~~~~~~~l~~i~~Gi~~a~~~~g 148 (342)
T 3c9u_A 84 GVHFLRSYIPEAVGWKAISVNVSDVIANGGLPK--WALISLNLPEDLEVSYVERFYIGVKRACEFYK 148 (342)
T ss_dssp TTTBCTTSCHHHHHHHHHHHHHHHHHHTTCEEE--EEEEEEEECTTSBHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 766799999899999999999999998589546--00031107751249999999999999975004
No 28
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.50 E-value=23 Score=15.54 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=34.6
Q ss_pred EEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCH
Q ss_conf 99659678999999963178899845477347886155568
Q gi|254780776|r 68 VSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTE 108 (186)
Q Consensus 68 I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~ 108 (186)
=.|||+..-..||.|.....-.+.....|..-.|-|..||+
T Consensus 37 W~~Yd~~~~~~IE~Ay~~~~~~v~v~i~g~~Y~IDf~~m~Q 77 (99)
T 1x4r_A 37 TQCFDKMTNMKLEVAWKAKKKDTVVQIHNQDFTVDLSTNTA 77 (99)
T ss_dssp EEECCTTHHHHHHHHHHTTCSEEEEEETTEEEEEETTTTEE
T ss_pred EEECCHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCCEE
T ss_conf 88898699999999998299879999899679999012889
No 29
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=30.11 E-value=27 Score=15.02 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 4788615556899999999999988899
Q gi|254780776|r 98 VLRIPVPETTEERRLALVKVAHAYAEKS 125 (186)
Q Consensus 98 ~I~i~iP~lT~E~R~~lvK~~k~~~E~~ 125 (186)
.|.|..|.+|.|.+++|++.+-..+.+.
T Consensus 2 ~I~v~~~~~s~EqK~~L~~~iT~~~~~~ 29 (62)
T 3m20_A 2 VLIVYGPKLDVGKKREFVERLTSVAAEI 29 (62)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8999169999999999999999999999
No 30
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: b.45.1.1
Probab=26.84 E-value=29 Score=14.84 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCCCCCCCCEEEEECCCCC---HHHHHHHHHHHHHH
Q ss_conf 9984547734788615556---89999999999998
Q gi|254780776|r 89 GLNPIVEGQVLRIPVPETT---EERRLALVKVAHAY 121 (186)
Q Consensus 89 ~l~p~~dg~~I~i~iP~lT---~E~R~~lvK~~k~~ 121 (186)
|+.....+...||+||.+- ++.|+.|++.+++.
T Consensus 202 G~dl~~~~~~~Ri~F~~~~~~~~~~r~~lv~l~~~a 237 (247)
T 2arz_A 202 GFHLRIGQGLHWLPFPAACGNPGAVRQALVQLARAE 237 (247)
T ss_dssp EEEEEETTEEEEEECSSCCCSHHHHHHHHHHHHHCS
T ss_pred CCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 578998998899658991879999999999999997
No 31
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=25.32 E-value=18 Score=16.20 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=16.6
Q ss_pred EECCCCCHHHHHHHHHHHHH
Q ss_conf 86155568999999999999
Q gi|254780776|r 101 IPVPETTEERRLALVKVAHA 120 (186)
Q Consensus 101 i~iP~lT~E~R~~lvK~~k~ 120 (186)
+.+|-+++|.|.-.++.+|.
T Consensus 13 l~~pnl~eeqrng~iqslkd 32 (34)
T 1l6x_B 13 LHDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHCTTCCHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHCCHHHHHCC
T ss_conf 80888788897335877513
No 32
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), structural genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=25.26 E-value=33 Score=14.45 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf 5864239987651205783898996
Q gi|254780776|r 46 YGSHVPLNQVANVTVLEPRMLVVSV 70 (186)
Q Consensus 46 ~g~~~pL~~lA~Is~~~~~~l~I~~ 70 (186)
+|...||.+|+.+..+-+--+.|.-
T Consensus 184 ~G~~~~l~~I~~ia~~~g~~l~vD~ 208 (397)
T 3f9t_A 184 LGTIDNIEELSKIAKENNIYIHVDA 208 (397)
T ss_dssp TCCBCCHHHHHHHHHHHTCEEEEEC
T ss_pred CCEEECHHHHHCCCCCCCCEEEEEC
T ss_conf 6268347775221224564267760
No 33
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=22.77 E-value=37 Score=14.13 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=27.7
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6155568999999999999888999999999999
Q gi|254780776|r 102 PVPETTEERRLALVKVAHAYAEKSKISVRNIRRD 135 (186)
Q Consensus 102 ~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~ 135 (186)
.+|.++.|-|+.+++.+....++|..-|+...-+
T Consensus 27 ~i~~~~geerk~~i~~ie~~ldEA~ell~QMelE 60 (102)
T 1vcs_A 27 RVPRLPPDEKKQMVANVEKQLEEARELLEQMDLE 60 (102)
T ss_dssp HGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8773782779999999998589999999999999
No 34
>1xp3_A Endonuclease IV; NFO, DNA replication, DNA recombination, DNA repair, spine, structural genomics, structural proteomics in europe, hydrolase; 2.57A {Bacillus anthracis} SCOP: c.1.15.1
Probab=20.92 E-value=40 Score=13.89 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=39.0
Q ss_pred HHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6512057838989965967899999996317889984547734788615-5568999999999999888999
Q gi|254780776|r 56 ANVTVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVP-ETTEERRLALVKVAHAYAEKSK 126 (186)
Q Consensus 56 A~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP-~lT~E~R~~lvK~~k~~~E~~K 126 (186)
.||-+.+||++...+.++..+...-+++..++++.- ..-+..+ +.+. +.-.+.|+..++.+...++.|.
T Consensus 40 ~QiF~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~vHapYl-iNLas~~~~~~r~~Si~~l~~~l~~a~ 109 (307)
T 1xp3_A 40 FMIYTGAPQNTRRKPIEELNIEAGRKHMEQNGIEEI-IIHAPYI-INVGNTTKPETFQLGVDFLRMEIERTS 109 (307)
T ss_dssp EEECSSCTTCCCCCCGGGGCHHHHHHHHHHTTCCCE-EEECCTT-CCTTCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE-EEECCEE-ECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999788967899999998999999999997389856-9714502-255665408999999999999999999
No 35
>2qyw_A Vesicle transport through interaction with T- snares 1B homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.82 E-value=40 Score=13.87 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=23.5
Q ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55568-999999999999888999999999999
Q gi|254780776|r 104 PETTE-ERRLALVKVAHAYAEKSKISVRNIRRD 135 (186)
Q Consensus 104 P~lT~-E~R~~lvK~~k~~~E~~K~~iR~iR~~ 135 (186)
|+.+. |-|+.+++.+....++|..-|+...-+
T Consensus 39 ~~~~g~eerk~~i~~ie~~leEA~ell~qMelE 71 (102)
T 2qyw_A 39 LGTAGTEEKKKLVRDFDEKQQEANETLAEMEEE 71 (102)
T ss_dssp HTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 536894889999999998799999999999999
No 36
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=20.68 E-value=41 Score=13.85 Aligned_cols=72 Identities=21% Similarity=0.190 Sum_probs=45.8
Q ss_pred HHHHHHHCCCCCEEEEEE------------CCHHHHHHHHHHHHCCC---CCCCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 987651205783898996------------59678999999963178---899845477347886155568999999999
Q gi|254780776|r 53 NQVANVTVLEPRMLVVSV------------WDKEMVASVERGIHESN---LGLNPIVEGQVLRIPVPETTEERRLALVKV 117 (186)
Q Consensus 53 ~~lA~Is~~~~~~l~I~~------------~D~~~ik~I~kAI~~s~---l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~ 117 (186)
-+-|-+...++..|+++. +||..+....-+..-|| +|-.|. .-.+.+.+|+...+.-+++++-
T Consensus 26 DDaavi~~~~~~~lv~t~D~~~e~~hf~~~~~p~~~G~~av~~~~sDi~amGa~P~--~~~~~l~~p~~~~~~l~~i~~G 103 (319)
T 3mcq_A 26 DDAALIQPSPGMELAVSADMLVANTHFYPNIDPWLIGWKSLAVNISDMAAMGAQPR--WATLTIALPEADEDWISKFAAG 103 (319)
T ss_dssp GGGGCCCCCTTCEEEEEEEEEECCTTSCCCSCHHHHHHHHHHHHHHHHHHTTCEEE--EEEEEEEESSCCHHHHHHHHHH
T ss_pred CCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--EEEECCCCCCCCHHHHHHHHHH
T ss_conf 88899852899679999255545667799999999999999998999987469882--6531146787899999999889
Q ss_pred HHHHHHHHH
Q ss_conf 999888999
Q gi|254780776|r 118 AHAYAEKSK 126 (186)
Q Consensus 118 ~k~~~E~~K 126 (186)
+.+.|+++.
T Consensus 104 i~~a~~~~g 112 (319)
T 3mcq_A 104 FFACAAQFD 112 (319)
T ss_dssp HHHHHHHTT
T ss_pred HHHHCCCCC
T ss_conf 998714487
No 37
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; 1.94A {Agrobacterium tumefaciens str}
Probab=20.16 E-value=38 Score=14.07 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=17.1
Q ss_pred CCCCEEEEECCCCC---HHHHHHHHHHHHH
Q ss_conf 47734788615556---8999999999999
Q gi|254780776|r 94 VEGQVLRIPVPETT---EERRLALVKVAHA 120 (186)
Q Consensus 94 ~dg~~I~i~iP~lT---~E~R~~lvK~~k~ 120 (186)
..+...||+||..= +|.|..|++.+|.
T Consensus 228 ~~~~~~Ri~F~~~v~~~~~~r~aLv~l~k~ 257 (258)
T 3dnh_A 228 SASDLARLWFAERVETLKQFEKALAQLLKG 257 (258)
T ss_dssp CSSCEEEEECSSCCCSHHHHHHHHHHHTC-
T ss_pred ECCEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 799899975898387999999999998652
Done!