HHSEARCH alignment of GI: 254780776 and SCOP domain: d1is1a_

Alignment
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=100.00  E-value=0  Score=399.63  Aligned_cols=179  Identities=43%  Similarity=0.691  Sum_probs=177.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf             89999999999999999975313888896782450788558642399876512057838989965967899999996317
Q gi|254780776|r    7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHES   86 (186)
Q Consensus         7 l~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s   86 (186)
                      +.+++++|+++++||+.+|+++||||+||++||+|+|+|||+++||++||+|++++|++|+|+|||++++++|++||++|
T Consensus         6 ~~~~~~kM~kai~~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekAI~~s   85 (185)
T d1is1a_           6 KKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMS   85 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHC
T ss_conf             99999999999999999998760289997995880787799973177875411177726998845610089999999855


Q ss_pred             CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             88998454773478861555689999999999998889999999999999999998753589997899888999999999
Q gi|254780776|r   87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD  166 (186)
Q Consensus        87 ~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~  166 (186)
                      |||+||++||+.|+|||||||+|+|++++|.||+.+|+||++||++||++++.+|++++++++|||+.++++++||++||
T Consensus        86 ~lglnp~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~akv~iRniRr~~~~~ikk~~k~~~iseD~~k~~~~~iq~ltd  165 (185)
T d1is1a_          86 DLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTD  165 (185)
T ss_dssp             TSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             65556566896255048877699999999999998999999899999999999986323489987688899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999988744
Q gi|254780776|r  167 STIKNIDSFFEEKKKEIMH  185 (186)
Q Consensus       167 ~~~~~id~~~~~Kekell~  185 (186)
                      +|++++|++++.||+|||+
T Consensus       166 ~~~~~id~~~~~KekEim~  184 (185)
T d1is1a_         166 VAVKKIDEVLAAKEKELME  184 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999998544


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]