Query         gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 186
No_of_seqs    108 out of 1882
Neff          6.4 
Searched_HMMs 13730
Date          Wed Jun  1 07:37:35 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780776.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1dd5a_ d.67.3.1 (A:) Ribosome 100.0       0       0  406.7  22.2  184    1-186     1-184 (184)
  2 d1ek8a_ d.67.3.1 (A:) Ribosome 100.0       0       0  403.9  20.1  183    2-186     3-185 (185)
  3 d1wqga1 d.67.3.1 (A:2-184) Rib 100.0       0       0  400.9  21.3  183    1-185     1-183 (183)
  4 d1is1a_ d.67.3.1 (A:) Ribosome 100.0       0       0  399.6  20.3  179    7-185     6-184 (185)
  5 d1eh1a_ d.67.3.1 (A:) Ribosome 100.0       0       0  394.2  19.3  181    2-184     4-184 (185)
  6 d1ge9a_ d.67.3.1 (A:) Ribosome 100.0       0       0  379.7  17.6  175    7-185     9-183 (184)
  7 d1wiha_ d.67.3.1 (A:) Ribosome  99.9 2.2E-25 1.6E-29  192.1   3.3   82   31-112     1-83  (84)
  8 d2fqma1 d.378.1.1 (A:107-171)   68.5     3.8 0.00028   19.2   4.6   32   95-126    12-44  (65)
  9 d2o8pa1 a.118.7.1 (A:8-227) 14  61.7     5.1 0.00037   18.4   4.4   31  104-134    39-69  (220)
 10 d1in0a2 d.58.49.1 (A:90-163) H  58.3     2.5 0.00018   20.5   2.1   34   71-104    13-46  (74)
 11 d2o02a1 a.118.7.1 (A:1-230) ze  50.5     7.7 0.00056   17.1   6.6   71  104-175    34-104 (230)
 12 d1qtwa_ c.1.15.1 (A:) Endonucl  49.5     7.3 0.00053   17.3   3.3   67   59-126    32-99  (285)
 13 d1iwga6 d.225.1.1 (A:725-812)   42.4     2.7 0.00019   20.3   0.2   30   31-60     55-85  (88)
 14 d2arza1 b.45.1.1 (A:2-239) Hyp  39.7     8.2 0.00059   17.0   2.3   31   90-120   199-232 (238)
 15 d1tz9a_ c.1.15.6 (A:) Mannonat  30.7      14 0.00099   15.5   2.2   78   48-134    13-96  (353)
 16 d1iwga5 d.225.1.1 (A:182-273)   22.7      13 0.00094   15.6   0.9   28   33-60     60-89  (92)
 17 d1zh5a1 a.4.5.46 (A:5-103) Lup  22.2      22  0.0016   14.1   2.7   89    7-109     6-99  (99)

No 1  
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=0  Score=406.68  Aligned_cols=184  Identities=41%  Similarity=0.709  Sum_probs=181.1

Q ss_pred             CCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHH
Q ss_conf             94200789999999999999999975313888896782450788558642399876512057838989965967899999
Q gi|254780776|r    1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVE   80 (186)
Q Consensus         1 ~~e~~dl~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~   80 (186)
                      +|++  +.+++++|+++++||+.+|+++|||||||++||+|+|+|||+++||++||+|++++|++|+|+|||++++++|+
T Consensus         1 i~~~--~~~~~~kM~~ai~~l~~el~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~I~   78 (184)
T d1dd5a_           1 VNPF--IKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIE   78 (184)
T ss_dssp             CCHH--HHHHHHHHHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHH
T ss_pred             CHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHH
T ss_conf             9579--99999999999999999998874289997997844784489865278886202478634675046343589999


Q ss_pred             HHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             99631788998454773478861555689999999999998889999999999999999998753589997899888999
Q gi|254780776|r   81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEND  160 (186)
Q Consensus        81 kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~  160 (186)
                      +||++||||+||++||+.|+|||||||+|+|++++|.||+.+|+||++||++|+++++++|++++.+++|||+.++++++
T Consensus        79 kAI~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iR~iR~~~~~~lk~~~k~~~iseD~~k~~~~~  158 (184)
T d1dd5a_          79 KAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENE  158 (184)
T ss_dssp             HHHHHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             99985156789866764211124641399999999999999999999999999999999887530489886588889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999887449
Q gi|254780776|r  161 IQKITDSTIKNIDSFFEEKKKEIMHF  186 (186)
Q Consensus       161 iq~lt~~~~~~id~~~~~Kekell~~  186 (186)
                      ||++||+|++++|++++.||+|||+|
T Consensus       159 iq~ltd~~~~~id~~~~~Kekeim~~  184 (184)
T d1dd5a_         159 IQKLTDEFIEKLDEVFEIKKEEIMEF  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999999997379


No 2  
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=403.86  Aligned_cols=183  Identities=40%  Similarity=0.656  Sum_probs=180.0

Q ss_pred             CHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
Q ss_conf             42007899999999999999999753138888967824507885586423998765120578389899659678999999
Q gi|254780776|r    2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVER   81 (186)
Q Consensus         2 ~e~~dl~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~k   81 (186)
                      +++  +++++++|+++++||+.+|+++|||||||++||+|+|+|||+++||++||+||+++|++|+|+|||++.+++|++
T Consensus         3 ~~i--~~~~~~kM~k~ie~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~Iek   80 (185)
T d1ek8a_           3 SDI--RKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEK   80 (185)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHTCCCSSCCTTTTTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHH
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCEEEEEECCCCCCHHHHHHHCCCCCHHEEEEECHHHHHHHHHH
T ss_conf             899--999999999999999999987711899979969037854999504788865403764200210011755999999


Q ss_pred             HHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             96317889984547734788615556899999999999988899999999999999999987535899978998889999
Q gi|254780776|r   82 GIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI  161 (186)
Q Consensus        82 AI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~i  161 (186)
                      ||++||||+||+++|+.|+|+|||||+|+|++++|.||+.+|+||++||++||+++++++++++.+++|||+.++++++|
T Consensus        81 AI~~s~lgl~p~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~~kv~iR~iRr~~~~~ik~~~k~~~iseD~~k~~~~~i  160 (185)
T d1ek8a_          81 AIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDV  160 (185)
T ss_dssp             HHHHTCSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             99715678999756543000568887899999999999999999999999999999998864055899865888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999887449
Q gi|254780776|r  162 QKITDSTIKNIDSFFEEKKKEIMHF  186 (186)
Q Consensus       162 q~lt~~~~~~id~~~~~Kekell~~  186 (186)
                      |++||+|++++|++++.||+|||+|
T Consensus       161 q~ltd~~~~~id~~~~~Kekeil~~  185 (185)
T d1ek8a_         161 QKLTDAAIKKIEAALADKEAELMQF  185 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999999997479


No 3  
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00  E-value=0  Score=400.86  Aligned_cols=183  Identities=36%  Similarity=0.668  Sum_probs=179.7

Q ss_pred             CCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHH
Q ss_conf             94200789999999999999999975313888896782450788558642399876512057838989965967899999
Q gi|254780776|r    1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVE   80 (186)
Q Consensus         1 ~~e~~dl~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~   80 (186)
                      |+++  +.+++++|++++++|+.+|+++|||||||++||+|+|+|||+.+||++||+|++++|++|+|+|||++++++|+
T Consensus         1 i~~~--l~~~~~kM~kai~~l~~el~~irtGRasp~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~Ie   78 (183)
T d1wqga1           1 IDEA--LFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIE   78 (183)
T ss_dssp             CHHH--HHHHHHHHHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHH
T ss_pred             CHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHH
T ss_conf             9478--99999999999999999998873479997880884885389955078887664167655887523066699999


Q ss_pred             HHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             99631788998454773478861555689999999999998889999999999999999998753589997899888999
Q gi|254780776|r   81 RGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLEND  160 (186)
Q Consensus        81 kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~  160 (186)
                      +||++||||+||++||+.|+|||||||+|+|++++|.||+.+|+||++||++||++++.++++++++++|+|+.++++++
T Consensus        79 kAI~~s~lglnP~~dg~~Irv~iP~lT~E~R~elvK~ak~~~E~aKv~iRniR~~~~~~lk~~~k~~~iseD~~~~~~~~  158 (183)
T d1wqga1          79 TAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKD  158 (183)
T ss_dssp             HHHHHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             99987578899876786235443668899999999999999999999999999999999987423689986688889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999988744
Q gi|254780776|r  161 IQKITDSTIKNIDSFFEEKKKEIMH  185 (186)
Q Consensus       161 iq~lt~~~~~~id~~~~~Kekell~  185 (186)
                      ||++||+|++++|++++.||+|||+
T Consensus       159 iq~ltd~~~~~id~~~~~KekEil~  183 (183)
T d1wqga1         159 LDKTTHQYVTQIDELVKHKEGELLE  183 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999998609


No 4  
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=100.00  E-value=0  Score=399.63  Aligned_cols=179  Identities=43%  Similarity=0.691  Sum_probs=177.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf             89999999999999999975313888896782450788558642399876512057838989965967899999996317
Q gi|254780776|r    7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHES   86 (186)
Q Consensus         7 l~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s   86 (186)
                      +.+++++|+++++||+.+|+++||||+||++||+|+|+|||+++||++||+|++++|++|+|+|||++++++|++||++|
T Consensus         6 ~~~~~~kM~kai~~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekAI~~s   85 (185)
T d1is1a_           6 KKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMS   85 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHC
T ss_conf             99999999999999999998760289997995880787799973177875411177726998845610089999999855


Q ss_pred             CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             88998454773478861555689999999999998889999999999999999998753589997899888999999999
Q gi|254780776|r   87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD  166 (186)
Q Consensus        87 ~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~  166 (186)
                      |||+||++||+.|+|||||||+|+|++++|.||+.+|+||++||++||++++.+|++++++++|||+.++++++||++||
T Consensus        86 ~lglnp~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~akv~iRniRr~~~~~ikk~~k~~~iseD~~k~~~~~iq~ltd  165 (185)
T d1is1a_          86 DLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTD  165 (185)
T ss_dssp             TSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             65556566896255048877699999999999998999999899999999999986323489987688899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999988744
Q gi|254780776|r  167 STIKNIDSFFEEKKKEIMH  185 (186)
Q Consensus       167 ~~~~~id~~~~~Kekell~  185 (186)
                      +|++++|++++.||+|||+
T Consensus       166 ~~~~~id~~~~~KekEim~  184 (185)
T d1is1a_         166 VAVKKIDEVLAAKEKELME  184 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999998544


No 5  
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=394.21  Aligned_cols=181  Identities=43%  Similarity=0.716  Sum_probs=177.8

Q ss_pred             CHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
Q ss_conf             42007899999999999999999753138888967824507885586423998765120578389899659678999999
Q gi|254780776|r    2 NQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVER   81 (186)
Q Consensus         2 ~e~~dl~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~k   81 (186)
                      +++  +++++++|++++++|+.+|+++|+||+||++||+|+|+|||+++||++||+|++++|++|+|+|||++++++|++
T Consensus         4 ~~~--~~~~~~~M~k~i~~l~~~l~~irtGra~p~lld~i~V~~~g~~~pL~~lA~Isv~~~~~l~I~~~D~~~v~~I~k   81 (185)
T d1eh1a_           4 KEL--YAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEK   81 (185)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHH
T ss_conf             999--999999999999999999987632889978808738855899511888864013886457740551678999999


Q ss_pred             HHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             96317889984547734788615556899999999999988899999999999999999987535899978998889999
Q gi|254780776|r   82 GIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDI  161 (186)
Q Consensus        82 AI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~i  161 (186)
                      ||++||||+||+++|++|+||||+||+|+|++++|.||+.+|+||++||++|++++++++++++.+++|||+.++++++|
T Consensus        82 AI~~s~l~l~p~~dg~~Irv~iP~lT~E~R~elvK~~k~~~E~akv~iR~iR~~~~~~ikk~~k~~~iseD~~k~~~~ei  161 (185)
T d1eh1a_          82 AIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEI  161 (185)
T ss_dssp             HHSSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             99866765566667654320678776999999999999999999999999999999998731035898877898899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999998874
Q gi|254780776|r  162 QKITDSTIKNIDSFFEEKKKEIM  184 (186)
Q Consensus       162 q~lt~~~~~~id~~~~~Kekell  184 (186)
                      |++||+|++++|++++.||+|||
T Consensus       162 q~ltd~~~~~id~~~~~KekEil  184 (185)
T d1eh1a_         162 QKITDEFIAKADQLAEKKEQEIL  184 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999999865


No 6  
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00  E-value=0  Score=379.73  Aligned_cols=175  Identities=36%  Similarity=0.656  Sum_probs=171.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf             89999999999999999975313888896782450788558642399876512057838989965967899999996317
Q gi|254780776|r    7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHES   86 (186)
Q Consensus         7 l~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s   86 (186)
                      +++++++|+++++||+.+|+++|+|||||++||+|+|+|||+++||++||+|++++|++|+|+|||++.+++|++|| .|
T Consensus         9 ~~~~~~~m~k~i~~l~~el~~irtGRasp~lld~i~V~~yg~~~pL~~lA~Is~~~~~~l~i~~~D~~~v~~IekAI-~s   87 (184)
T d1ge9a_           9 FKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAI-RE   87 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH-HC
T ss_conf             99999999999999999998773489997883874883199730198998753277432443136577799999998-60


Q ss_pred             CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             88998454773478861555689999999999998889999999999999999998753589997899888999999999
Q gi|254780776|r   87 NLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITD  166 (186)
Q Consensus        87 ~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~  166 (186)
                      +||+||+++|++|+|||||||+|+|++++|.||+.+|+||++||++|+++++.+|+++   ++|||+.++++++||++||
T Consensus        88 ~lglnp~~~g~~Iri~iP~lT~E~R~~lvK~ak~~~E~aKv~iRniR~~~~~~lKk~k---~iseD~~k~~~~~iqkltd  164 (184)
T d1ge9a_          88 ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE---GISEDEKKRALERLQKLTD  164 (184)
T ss_dssp             HHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST---TCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHH
T ss_conf             5888877877642036775549999999999999989999999997478999988743---7987788889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999988744
Q gi|254780776|r  167 STIKNIDSFFEEKKKEIMH  185 (186)
Q Consensus       167 ~~~~~id~~~~~Kekell~  185 (186)
                      +|++++|++++.||+|||+
T Consensus       165 ~~~~~id~~~~~Kekeim~  183 (184)
T d1ge9a_         165 KYIDEINKLMEAKEKEIMS  183 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999998626


No 7  
>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=99.90  E-value=2.2e-25  Score=192.12  Aligned_cols=82  Identities=32%  Similarity=0.545  Sum_probs=80.1

Q ss_pred             CCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             888967824507885586423998765120578389899659-6789999999631788998454773478861555689
Q gi|254780776|r   31 GRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWD-KEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEE  109 (186)
Q Consensus        31 Grasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D-~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E  109 (186)
                      |||||+|||+|+|+|||+++||+|||+|+++++++|.|+||| ++.+++|++||++||||+||++||+.|||+||+||.|
T Consensus         1 Gra~p~lld~I~V~~yg~~~pL~qlA~Isv~~~~~l~I~~~D~~~~~~~i~kAI~~S~LglnP~~dG~~Iri~iP~lT~~   80 (84)
T d1wiha_           1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG   80 (84)
T ss_dssp             CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred             CCCCHHHCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             98894781764997789824489986645278755899976653300788988873699988541798999878999777


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780776|r  110 RRL  112 (186)
Q Consensus       110 ~R~  112 (186)
                      .|.
T Consensus        81 ~~~   83 (84)
T d1wiha_          81 PSS   83 (84)
T ss_dssp             SCC
T ss_pred             CCC
T ss_conf             678


No 8  
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=68.51  E-value=3.8  Score=19.22  Aligned_cols=32  Identities=25%  Similarity=0.460  Sum_probs=28.7

Q ss_pred             CCCEEEEECCC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             77347886155-568999999999999888999
Q gi|254780776|r   95 EGQVLRIPVPE-TTEERRLALVKVAHAYAEKSK  126 (186)
Q Consensus        95 dg~~I~i~iP~-lT~E~R~~lvK~~k~~~E~~K  126 (186)
                      .|.++++..|. +|+|.+.+..+..+..+|-+|
T Consensus        12 ~~KsL~Lf~P~gLt~~Q~~QW~~TIeav~qSak   44 (65)
T d2fqma1          12 HGKTLRLTLPEGLSGEQKSQWMLTIKAVVQSAK   44 (65)
T ss_dssp             TEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             972688737877326789999999999986503


No 9  
>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}
Probab=61.74  E-value=5.1  Score=18.37  Aligned_cols=31  Identities=13%  Similarity=0.115  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5556899999999999988899999999999
Q gi|254780776|r  104 PETTEERRLALVKVAHAYAEKSKISVRNIRR  134 (186)
Q Consensus       104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~  134 (186)
                      |.||.|-|.-|.-.-|.....-|.+.|.+-.
T Consensus        39 ~eLt~eERnLLsvayKn~i~~~R~s~R~i~~   69 (220)
T d2o8pa1          39 SEFDDEERHLLTLCIKHKISDYRTMTSQVLQ   69 (220)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6589999999999999987013999999999


No 10 
>d1in0a2 d.58.49.1 (A:90-163) Hypothetical protein HI1034 {Haemophilus influenzae [TaxId: 727]}
Probab=58.29  E-value=2.5  Score=20.53  Aligned_cols=34  Identities=15%  Similarity=0.386  Sum_probs=31.2

Q ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf             5967899999996317889984547734788615
Q gi|254780776|r   71 WDKEMVASVERGIHESNLGLNPIVEGQVLRIPVP  104 (186)
Q Consensus        71 ~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP  104 (186)
                      -|....+.|.+.|.++.+-++++..|..|||+=.
T Consensus        13 I~~e~AKkI~k~IK~~k~KVq~~IQGd~vRVtgK   46 (74)
T d1in0a2          13 IETEMAKKITKLVKDSKIKVQTQIQGEQVRVTGK   46 (74)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEEETTEEEEEES
T ss_pred             CCHHHHHHHHHHHHHCCCCCEEEECCCEEEECCC
T ss_conf             5989999999999723884159975827786378


No 11 
>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}
Probab=50.52  E-value=7.7  Score=17.14  Aligned_cols=71  Identities=14%  Similarity=0.203  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             555689999999999998889999999999999999998753589997899888999999999999999999
Q gi|254780776|r  104 PETTEERRLALVKVAHAYAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSF  175 (186)
Q Consensus       104 P~lT~E~R~~lvK~~k~~~E~~K~~iR~iR~~~~~~ikk~~k~~~iseD~~~~~~~~iq~lt~~~~~~id~~  175 (186)
                      |.+|.|-|.-+.-..|...-.-|.+.|.+..-..+... ......+-.+-..+.+.++..+-++.+.-||..
T Consensus        34 ~eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~~~-~~~~~~~i~~yk~kie~EL~~~C~dil~lid~~  104 (230)
T d2o02a1          34 AELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEG-AEKKQQMAREYREKIETELRDICNDVLSLLEKF  104 (230)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             99999999999999987661599999999999998707-611467899999999999999870068888861


No 12 
>d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]}
Probab=49.50  E-value=7.3  Score=17.32  Aligned_cols=67  Identities=6%  Similarity=-0.017  Sum_probs=41.8

Q ss_pred             HCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCC-CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             205783898996596789999999631788998454-77347886155568999999999999888999
Q gi|254780776|r   59 TVLEPRMLVVSVWDKEMVASVERGIHESNLGLNPIV-EGQVLRIPVPETTEERRLALVKVAHAYAEKSK  126 (186)
Q Consensus        59 s~~~~~~l~I~~~D~~~ik~I~kAI~~s~l~l~p~~-dg~~I~i~iP~lT~E~R~~lvK~~k~~~E~~K  126 (186)
                      -+.+||.+...+.++..+..+.+++...++...... -+.. .+.+..+..+.|+..++..+..++-|.
T Consensus        32 f~~~P~~w~~~~~~~~~~~~~k~~~~~~gl~~~~~~~~~p~-~~n~~~~~~~~r~~s~~~~~~~i~~a~   99 (285)
T d1qtwa_          32 FTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQILPHDSY-LINLGHPVTEALEKSRDAFIDEMQRCE   99 (285)
T ss_dssp             CSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGGBCCBCCT-TCCTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             79997777889999999999999999819984056742774-001256218899999999999999999


No 13 
>d1iwga6 d.225.1.1 (A:725-812) Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains {Escherichia coli [TaxId: 562]}
Probab=42.38  E-value=2.7  Score=20.33  Aligned_cols=30  Identities=23%  Similarity=0.228  Sum_probs=24.6

Q ss_pred             CCCCHHHHCCEEEEE-CCCCCHHHHHHHHHC
Q ss_conf             888967824507885-586423998765120
Q gi|254780776|r   31 GRVSPSMLDLVKVEA-YGSHVPLNQVANVTV   60 (186)
Q Consensus        31 Grasp~lld~i~V~~-~g~~~pL~~lA~Is~   60 (186)
                      .|.+++-|.++.|.. .|..+||.++|.|..
T Consensus        55 ~r~~~~~L~~l~i~~~~G~~vpLs~va~v~~   85 (88)
T d1iwga6          55 YRMLPDDIGDWYVRAADGQMVPFSAFSSSRW   85 (88)
T ss_dssp             GSSSGGGGTTCEECCTTSCCEEGGGTCCEEE
T ss_pred             HCCCHHHHHHCCCCCCCCCEEEHHHEEEEEE
T ss_conf             8389989984024899997999317799999


No 14 
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=39.73  E-value=8.2  Score=16.99  Aligned_cols=31  Identities=26%  Similarity=0.374  Sum_probs=21.9

Q ss_pred             CCCCCCCCEEEEECCCC---CHHHHHHHHHHHHH
Q ss_conf             98454773478861555---68999999999999
Q gi|254780776|r   90 LNPIVEGQVLRIPVPET---TEERRLALVKVAHA  120 (186)
Q Consensus        90 l~p~~dg~~I~i~iP~l---T~E~R~~lvK~~k~  120 (186)
                      +.....+..+|||||.+   ..+.|+.|++.+++
T Consensus       199 ~~l~~~~~~~ri~F~~~~~~~~~~r~~lv~l~~~  232 (238)
T d2arza1         199 FHLRIGQGLHWLPFPAACGNPGAVRQALVQLARA  232 (238)
T ss_dssp             EEEEETTEEEEEECSSCCCSHHHHHHHHHHHHHC
T ss_pred             CEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             8999899999974898588999999999999998


No 15 
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus faecalis (Streptococcus faecalis) [TaxId: 1351]}
Probab=30.67  E-value=14  Score=15.47  Aligned_cols=78  Identities=15%  Similarity=0.355  Sum_probs=43.6

Q ss_pred             CCCHHHHHHHH-HCCCC--CEEEE---EECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             64239987651-20578--38989---96596789999999631788998454773478861555689999999999998
Q gi|254780776|r   48 SHVPLNQVANV-TVLEP--RMLVV---SVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHAY  121 (186)
Q Consensus        48 ~~~pL~~lA~I-s~~~~--~~l~I---~~~D~~~ik~I~kAI~~s~l~l~p~~dg~~I~i~iP~lT~E~R~~lvK~~k~~  121 (186)
                      .+.+|.+|.|+ .+.+-  ....+   .+|....+....+.|.+++|.++..-.       +| +.+..+. =...-.+.
T Consensus        13 d~v~L~~i~Q~~G~~~iv~~l~~~~~G~~W~~~~i~~~k~~ie~~GL~~~vvEs-------~p-v~e~Ik~-g~~~~~~~   83 (353)
T d1tz9a_          13 DAIPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLALLGIES-------VA-IHDAIKA-GTDQRDHY   83 (353)
T ss_dssp             CCSCHHHHTTSTTCCEEEECCSSSCTTCCCCHHHHHHHHHHHHHTTCEEEEECS-------CC-CCHHHHH-TCSTHHHH
T ss_pred             CCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC-------CC-CHHHHHC-CCCCHHHH
T ss_conf             963689975132885332227789999867999999999999976997998418-------99-7177643-89769999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             8899999999999
Q gi|254780776|r  122 AEKSKISVRNIRR  134 (186)
Q Consensus       122 ~E~~K~~iR~iR~  134 (186)
                      .|.++.+|||+=+
T Consensus        84 Ien~~~slrnla~   96 (353)
T d1tz9a_          84 IDNYRQTLRNLGK   96 (353)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999997


No 16 
>d1iwga5 d.225.1.1 (A:182-273) Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains {Escherichia coli [TaxId: 562]}
Probab=22.70  E-value=13  Score=15.62  Aligned_cols=28  Identities=25%  Similarity=0.345  Sum_probs=22.3

Q ss_pred             CCHHHHCCEEEEE--CCCCCHHHHHHHHHC
Q ss_conf             8967824507885--586423998765120
Q gi|254780776|r   33 VSPSMLDLVKVEA--YGSHVPLNQVANVTV   60 (186)
Q Consensus        33 asp~lld~i~V~~--~g~~~pL~~lA~Is~   60 (186)
                      -++.-|.++.|..  .|....|.++|.|..
T Consensus        60 ~s~~d~~~ivI~~~~~G~~VrL~DVA~V~~   89 (92)
T d1iwga5          60 TSTEEFGKILLKVNQDGSRVLLRDVAKIEL   89 (92)
T ss_dssp             CSHHHHHTCEEEEETTTEEEEHHHHEEEEE
T ss_pred             CCHHHHEEEEEEECCCCCEEEEEEEEEEEE
T ss_conf             272202014989879998999860069997


No 17 
>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.20  E-value=22  Score=14.06  Aligned_cols=89  Identities=17%  Similarity=0.280  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf             89999999999999999975313888896782450788558642399876512057838989965967899999996317
Q gi|254780776|r    7 LQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVLEPRMLVVSVWDKEMVASVERGIHES   86 (186)
Q Consensus         7 l~~~~~~m~~~i~~l~~el~~irtGrasp~lld~i~V~~~g~~~pL~~lA~Is~~~~~~l~I~~~D~~~ik~I~kAI~~s   86 (186)
                      ...+..+..+.|+++=.+- .++   -+.=|...+  +.+.+.+||.-||+-...-  .|  +    .....|..|+..|
T Consensus         6 ~~~l~~~I~~QvEfYFSd~-NL~---~D~fL~~~m--~~~eG~Vpl~~i~~F~r~k--~l--~----~~~~~i~~Al~~S   71 (99)
T d1zh5a1           6 MAALEAKICHQIEYYFGDF-NLP---RDKFLKEQI--KLDEGWVPLEIMIKFNRLN--RL--T----TDFNVIVEALSKS   71 (99)
T ss_dssp             HHHHHHHHHHHHHHHTSTT-TGG---GCHHHHHHH--TTTTTCEEHHHHTTSHHHH--HH--C----CCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHCCHH-HHC---CCHHHHHHH--HCCCCCCCHHHHHCCHHHH--HH--C----CCHHHHHHHHHHC
T ss_conf             8999999999999746786-635---299999997--2679966389986466899--87--6----8999999999969


Q ss_pred             CC-CCCCCCCCCEEE----EECCCCCHH
Q ss_conf             88-998454773478----861555689
Q gi|254780776|r   87 NL-GLNPIVEGQVLR----IPVPETTEE  109 (186)
Q Consensus        87 ~l-~l~p~~dg~~I~----i~iP~lT~E  109 (186)
                      .. -+....||..||    .|+|.+|.|
T Consensus        72 ~~~~lev~~d~~~vRR~~~~plpe~~~E   99 (99)
T d1zh5a1          72 KAELMEISEDKTKIRRSPSKPLPEVTDE   99 (99)
T ss_dssp             SSCCEEECTTSSEEEECTTSCCCCCCHH
T ss_pred             CCCEEEECCCCCEECCCCCCCCCCCCCC
T ss_conf             9876998199865677999989875679


Done!