BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str. psy62] (186 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780776|ref|YP_003065189.1| ribosome recycling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 379 bits (972), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/186 (100%), Positives = 186/186 (100%) Query: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV Sbjct: 1 MNQVIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTV 60 Query: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA Sbjct: 61 LEPRMLVVSVWDKEMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 Query: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK Sbjct: 121 YAEKSKISVRNIRRDGMDHLKKSRKSGKASEDMVASLENDIQKITDSTIKNIDSFFEEKK 180 Query: 181 KEIMHF 186 KEIMHF Sbjct: 181 KEIMHF 186 >gi|254780410|ref|YP_003064823.1| hypothetical protein CLIBASIA_01475 [Candidatus Liberibacter asiaticus str. psy62] Length = 362 Score = 25.8 bits (55), Expect = 0.49, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%) Query: 4 VIDLQNIKDRMGDTISFLKKDMMTLRTGRVSPSMLDLVKVEAYGSHVPLNQVANVTVL 61 VID ++ R+GDT+ +K T + V+P DL SHV +++++ +L Sbjct: 238 VIDYGYLQSRVGDTLQAVKGH--TYVSPLVNPGQADL------SSHVDFQRLSSIAIL 287 >gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62] Length = 363 Score = 24.3 bits (51), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 74 EMVASVERGIHESNLGLNPIVEGQVLRIPVPETTEERRLALVKVAHA 120 E+V+S G+ + LG+ +G+++ I PE++ + LAL +A + Sbjct: 46 EVVSSGSLGL-DIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQS 91 >gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter asiaticus str. psy62] Length = 737 Score = 23.1 bits (48), Expect = 3.0, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 33 VSPSMLDLVKVEAYGSHVPLNQVANVT 59 +SP DLV EA ++PL + V+ Sbjct: 677 ISPENQDLVMSEANNKNIPLRYLGKVS 703 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 22.7 bits (47), Expect = 4.1, Method: Compositional matrix adjust. Identities = 10/43 (23%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 90 LNPIVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVRNI 132 +P + ++L + + + +ER+L L+ ++H + +I+ R I Sbjct: 160 FDPALRHEILGL-LKQVCDERQLTLLMISHNLEDSMQIATRFI 201 >gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62] Length = 762 Score = 21.9 bits (45), Expect = 7.0, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 7/62 (11%) Query: 78 SVERGIHESNLGLNP-------IVEGQVLRIPVPETTEERRLALVKVAHAYAEKSKISVR 130 S R + + NP + G +R P+ T++ R L +A YA + ++ Sbjct: 474 SFNRDLSSDTISNNPNFVASKMLTAGLDIRYPIVAVTQKSRHILEGIAQVYAATDEKYIK 533 Query: 131 NI 132 I Sbjct: 534 TI 535 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 21.6 bits (44), Expect = 9.1, Method: Compositional matrix adjust. Identities = 8/23 (34%), Positives = 14/23 (60%) Query: 153 MVASLENDIQKITDSTIKNIDSF 175 +V +E QK++ ++NID F Sbjct: 526 LVCEMEERYQKMSKIGVRNIDGF 548 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.131 0.355 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 113,057 Number of Sequences: 1233 Number of extensions: 4195 Number of successful extensions: 18 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 12 length of query: 186 length of database: 328,796 effective HSP length: 69 effective length of query: 117 effective length of database: 243,719 effective search space: 28515123 effective search space used: 28515123 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 36 (18.5 bits)