HHsearch alignment for GI: 254780777 and conserved domain: cd04246

>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=100.00  E-value=2.6e-38  Score=255.84  Aligned_cols=215  Identities=26%  Similarity=0.352  Sum_probs=173.2

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999400368538877708999999999999999769909998236--54102334420377775402467888889899
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG--GNIFRGSQVVAENYLLCERSTVDSMGMLSTVI   86 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (242)
T Consensus         2 iV~KFGGtSv~~-------~e~i~~va~iI~~~~~~g~~viVVvSA~gg~Td~L~~l~~~~~~~~~~~~~d~ils~GE~l   74 (239)
T cd04246           2 IVQKFGGTSVAD-------IERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQI   74 (239)
T ss_pred             EEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             899878100499-------9999999999999986798299998489865677999888764772588999999988999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHH---------HHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHH
Q ss_conf             99999999976188641134001002456---------65432100001100111112465---------5677762157
Q gi|254780777|r   87 NALALDLALRKINVPTVILSSIFMPQVCE---------VFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSA  148 (242)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~  148 (242)
T Consensus        75 s~~lla~~L~~~G~~a~~~~~~~~~i~t~~~~~~a~i~~~~~~~~~~~l~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~t  154 (239)
T cd04246          75 SAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTT  154 (239)
T ss_pred             HHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEECCCCHHHH
T ss_conf             99999999997599808857323625304641022233530556665552454479733234489985688179964799


Q ss_pred             HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---CCCCCCCHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf             8888864164466514754351234322344444444115999985---5998140999999997499699951898547
Q gi|254780777|r  149 AALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG  225 (242)
Q Consensus       149 a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~  225 (242)
T Consensus       155 Aa~iA~~l~A~~v~iwTDVdGi~taDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ti~p~~~~~Ipi~I~nt~~~--  232 (239)
T cd04246         155 AVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSE--  232 (239)
T ss_pred             HHHHHHHHCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCC--
T ss_conf             999999728888999718972573899968766572752799999998689842589999999986995899848989--


Q ss_pred             HHHHHCCCCCCCEEC
Q ss_conf             999977998782466
Q gi|254780777|r  226 IWGGLSGIGRSTIIS  240 (242)
Q Consensus       226 i~~~l~Ge~~GT~I~  240 (242)
T Consensus       233 -------~-~GT~Is  239 (239)
T cd04246         233 -------N-PGTLIT  239 (239)
T ss_pred             -------C-CCCEEC
T ss_conf             -------8-987759