HHsearch alignment for GI: 254780777 and conserved domain: cd04255
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=2.1e-29 Score=200.88 Aligned_cols=221 Identities=19% Similarity=0.207 Sum_probs=166.7
Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99994003685388777089999999999999997699099982365410233442037777540246788888989999
Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINA 88 (242)
Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (242)
T Consensus 33 ~VvKIGGqsi~DrG-----~~av~Plv~Ei~~~~~~-hk~li~TGgG~RaRHiy~igldLg-mPtGvLa~L~~~vs~QNa 105 (262)
T cd04255 33 NVVKIGGQSIIDRG-----AEAVLPLVEEIVALRPE-HKLLILTGGGTRARHVYSIGLDLG-MPTGVLAKLGASVSEQNA 105 (262)
T ss_pred EEEEECCEEEECCC-----HHHHHHHHHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 28998780300373-----34243289999975131-528998367500334312341479-961156776422446479
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-----HHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 999999976188641134001002456654-----321000011001111124655677762157888886416446651
Q gi|254780777|r 89 LALDLALRKINVPTVILSSIFMPQVCEVFS-----CRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILK 163 (242)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~l~i 163 (242)
T Consensus 106 ~ml~~LLa~~G~~~i~~~~~~--~l~~~l~~~~~~v~~g~PPY~~~e~p~--~~g~IPphRTDtGAfLlAe~iGa~~li~ 181 (262)
T cd04255 106 EMLATLLAKHGGSKVGHGDLL--QLPTFLKAGRAPVISGMPPYGLWEHPA--EEGRIPPHRTDVGAFLLAEVIGARNLIF 181 (262)
T ss_pred HHHHHHHCCCCCEEECCCCHH--HHHHHHHCCCEEEEECCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 999998431387025787789--999998658710442799975454786--5687899754389999999848753799
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC--CCCCCHHHHHHHHH--CCCCEEEEECCCCCHHHHHHCCCCCCCEE
Q ss_conf 475435123432234444444411599998559--98140999999997--49969995189854799997799878246
Q gi|254780777|r 164 GTQVDGVYSADPRVHASSTRFDSLTYNQFIEKG--LKVMDCASVVLARD--CSIPIIVFSIHSPGGIWGGLSGIGRSTII 239 (242)
Q Consensus 164 ~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~G--~~v~~~~A~~~a~~--~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I 239 (242)
T Consensus 182 vkdVDGvYtaDPk~~~~A~~i~~iS~~Ell~~~L~dlv~er~~l~ll~~a~~i~~VqVvNgl~PGnitrAL~GEhVGTiI 261 (262)
T cd04255 182 VKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTII 261 (262)
T ss_pred EECCCCCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCEE
T ss_conf 96577776799999976534253779999863476430059999999861135517998078853799987268664100
Q ss_pred C
Q ss_conf 6
Q gi|254780777|r 240 S 240 (242)
Q Consensus 240 ~ 240 (242)
T Consensus 262 r 262 (262)
T cd04255 262 R 262 (262)
T ss_pred C
T ss_conf 9