HHsearch alignment for GI: 254780777 and conserved domain: cd04261
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=100.00 E-value=5.9e-38 Score=253.66 Aligned_cols=215 Identities=26% Similarity=0.348 Sum_probs=172.0
Q ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999400368538877708999999999999999769909998236--54102334420377775402467888889899
Q gi|254780777|r 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG--GNIFRGSQVVAENYLLCERSTVDSMGMLSTVI 86 (242)
Q Consensus 9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (242)
T Consensus 2 iV~KFGGtSv~~-------~e~i~~va~iI~~~~~~~~~vvVVvSA~gg~Td~Li~la~~~~~~~~~~e~d~ils~GE~l 74 (239)
T cd04261 2 IVQKFGGTSVAS-------IERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQV 74 (239)
T ss_pred EEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 899978201399-------9999999999998986699289997798753688999999870699989998887777999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHH---------HHHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHH
Q ss_conf 999999999761886411340010024---------5665432100001100111112465---------5677762157
Q gi|254780777|r 87 NALALDLALRKINVPTVILSSIFMPQV---------CEVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSA 148 (242)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~ 148 (242)
T Consensus 75 sa~ll~~~L~~~G~~a~~~~~~~~~i~t~~~~~~a~i~~~~~~~i~~~l~~~~v~Vv~GF~g~~~~g~~ttLGRGGSD~t 154 (239)
T cd04261 75 SIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTS 154 (239)
T ss_pred HHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHH
T ss_conf 99999999997699757968666754315752045568899999986402455589734655478884688279946889
Q ss_pred HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---CCCCCCCHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 8888864164466514754351234322344444444115999985---5998140999999997499699951898547
Q gi|254780777|r 149 AALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG 225 (242)
Q Consensus 149 a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~ 225 (242)
T Consensus 155 Aai~A~~l~A~~v~iwTDVdGi~taDPr~v~~A~~i~~lsy~EA~ela~~GakVlHp~ai~p~~~~~Ipi~i~nt~~p-- 232 (239)
T cd04261 155 AVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSE-- 232 (239)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCC--
T ss_conf 999999669888999818983275899968876773770799999999689731589999999986994899708989--
Q ss_pred HHHHHCCCCCCCEEC
Q ss_conf 999977998782466
Q gi|254780777|r 226 IWGGLSGIGRSTIIS 240 (242)
Q Consensus 226 i~~~l~Ge~~GT~I~ 240 (242)
T Consensus 233 -------~-~GT~Is 239 (239)
T cd04261 233 -------E-PGTLIT 239 (239)
T ss_pred -------C-CCCEEC
T ss_conf -------7-988859