HHsearch alignment for GI: 254780777 and conserved domain: cd04261

>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=100.00  E-value=5.9e-38  Score=253.66  Aligned_cols=215  Identities=26%  Similarity=0.348  Sum_probs=172.0

Q ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999400368538877708999999999999999769909998236--54102334420377775402467888889899
Q gi|254780777|r    9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG--GNIFRGSQVVAENYLLCERSTVDSMGMLSTVI   86 (242)
Q Consensus         9 IViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (242)
T Consensus         2 iV~KFGGtSv~~-------~e~i~~va~iI~~~~~~~~~vvVVvSA~gg~Td~Li~la~~~~~~~~~~e~d~ils~GE~l   74 (239)
T cd04261           2 IVQKFGGTSVAS-------IERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQV   74 (239)
T ss_pred             EEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             899978201399-------9999999999998986699289997798753688999999870699989998887777999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHH---------HHHHHHHHHCCHHHHCCCCCCCCCC---------CCCCCCCHHH
Q ss_conf             999999999761886411340010024---------5665432100001100111112465---------5677762157
Q gi|254780777|r   87 NALALDLALRKINVPTVILSSIFMPQV---------CEVFSCRNAVSYLSQGKVVIFSGGT---------GNAFLTTDSA  148 (242)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~D~~  148 (242)
T Consensus        75 sa~ll~~~L~~~G~~a~~~~~~~~~i~t~~~~~~a~i~~~~~~~i~~~l~~~~v~Vv~GF~g~~~~g~~ttLGRGGSD~t  154 (239)
T cd04261          75 SIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTS  154 (239)
T ss_pred             HHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHH
T ss_conf             99999999997699757968666754315752045568899999986402455589734655478884688279946889


Q ss_pred             HHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---CCCCCCCHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf             8888864164466514754351234322344444444115999985---5998140999999997499699951898547
Q gi|254780777|r  149 AALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG  225 (242)
Q Consensus       149 a~~ia~~~~ad~l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~---~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~  225 (242)
T Consensus       155 Aai~A~~l~A~~v~iwTDVdGi~taDPr~v~~A~~i~~lsy~EA~ela~~GakVlHp~ai~p~~~~~Ipi~i~nt~~p--  232 (239)
T cd04261         155 AVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSE--  232 (239)
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCC--
T ss_conf             999999669888999818983275899968876773770799999999689731589999999986994899708989--


Q ss_pred             HHHHHCCCCCCCEEC
Q ss_conf             999977998782466
Q gi|254780777|r  226 IWGGLSGIGRSTIIS  240 (242)
Q Consensus       226 i~~~l~Ge~~GT~I~  240 (242)
T Consensus       233 -------~-~GT~Is  239 (239)
T cd04261         233 -------E-PGTLIT  239 (239)
T ss_pred             -------C-CCCEEC
T ss_conf             -------7-988859