HHsearch results for GI: 254780777 and protein with PDBid: 2a1f_A
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=100.00 E-value=0 Score=329.75 Aligned_cols=238 Identities=42% Similarity=0.716 Sum_probs=197.0
Q ss_pred CCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 96888249999940036853887770899999999999999976990999823654102334420377775402467888
Q gi|254780777|r 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENYLLCERSTVDSMG 80 (242)
Q Consensus 1 m~~~~~KrIViKiGGSsL~~~~~~~~~~~~i~~ia~~I~~~~~~g~~vviV~sg~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (242)
|++-+|||||||||||+|+++++++++.++|+++|++|++++++|+++++|+||+..++............ ......
T Consensus 3 ~~~~~~krIViKiGgs~l~~~~~~~i~~~~l~~ia~~I~~l~~~g~~vviVssGa~~~g~~~l~~~~~~~~---~~~~~~ 79 (247)
T 2a1f_A 3 LSQPIYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRV---VGDHMG 79 (247)
T ss_dssp CCCCSCSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHH---HHHHHH
T ss_pred CCCCCCCEEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCC---CHHHHH
T ss_conf 99887887999977014417999875999999999999999967997999934664413445754689863---099999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHH
Q ss_conf 88989999999999976188641134001002456654321000011001111124655677762157888886416446
Q gi|254780777|r 81 MLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADV 160 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~ia~~~~ad~ 160 (242)
...........+..+........................+......+....++.....+.+++|||++|+++|.+++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dnD~laa~lA~~~~ad~ 159 (247)
T 2a1f_A 80 MLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADV 159 (247)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHCHHH
T ss_conf 99999999999999985142123430222200355777999999998669412213557888885279999999955559
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCEEC
Q ss_conf 65147543512343223444444441159999855998140999999997499699951898547999977998782466
Q gi|254780777|r 161 ILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240 (242)
Q Consensus 161 l~i~tdvdGiyt~dP~~~~~ak~i~~is~~e~l~~G~~v~~~~A~~~a~~~gI~v~I~ng~~~~~i~~~l~Ge~~GT~I~ 240 (242)
|+++|||||+||+||+++|+|+++++++++|+++.|+++||++|+++|+++||+++|+||++|++|.++|+||.+||+|+
T Consensus 160 lii~TdVdGvy~~dP~~~~~A~~~~~i~~~e~l~~g~~v~k~~A~~~a~~~gI~v~I~ng~~p~~i~~~l~Ge~vGT~I~ 239 (247)
T 2a1f_A 160 VLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 239 (247)
T ss_dssp EEEEESSSSCBCC-------CCBCSEECHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEEC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCEEEE
T ss_conf 97615456643799755777643441579999655986429999999998799089985899656999967999944995
Q ss_pred C
Q ss_conf 8
Q gi|254780777|r 241 G 241 (242)
Q Consensus 241 ~ 241 (242)
.
T Consensus 240 ~ 240 (247)
T 2a1f_A 240 E 240 (247)
T ss_dssp C
T ss_pred C
T ss_conf 6