RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780777|ref|YP_003065190.1| uridylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(242 letters)
>gnl|CDD|178986 PRK00358, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 310 bits (796), Expect = 3e-85
Identities = 127/234 (54%), Positives = 166/234 (70%), Gaps = 3/234 (1%)
Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66
KRVLLK+SGEALAG GFG+D + ++RI +I EV G+E+ IVVGGGNIFRG A
Sbjct: 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAA 60
Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126
+R+T D MGML+TV+NALAL AL + V T + S+I MPQV E + R A+ +L
Sbjct: 61 G---MDRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHL 117
Query: 127 SQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDS 186
+G+VVIF+ GTGN F TTD+AAALRA EIGADV+LK T VDGVY ADP+ + ++D
Sbjct: 118 EKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDR 177
Query: 187 LTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
LTY++ +EKGLKVMD ++ LARD IPIIVF+++ PG + + G T++S
Sbjct: 178 LTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231
>gnl|CDD|131130 TIGR02075, pyrH_bact, uridylate kinase. This protein, also called
UMP kinase, converts UMP to UDP by adding a phosphate
from ATP. It is the first step in pyrimidine
biosynthesis. GTP is an allosteric activator. In a large
fraction of all bacterial genomes, the gene tends to be
located immediately downstream of elongation factor Ts
and upstream of ribosome recycling factor. A related
protein family, believed to be equivalent in function
and found in the archaea and in spirochetes, is
described by a separate model, TIGR02076.
Length = 233
Score = 296 bits (759), Expect = 4e-81
Identities = 133/236 (56%), Positives = 172/236 (72%), Gaps = 4/236 (1%)
Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
YKRVLLK+SGEALAG SGFG+D D +NRI +I E+ GIE+GIV+GGGNIFRG
Sbjct: 1 YKRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKE 60
Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125
+R T D MGML+TVIN LAL AL K+ V T +LS+I MPQ+CE + R A+ +
Sbjct: 61 LGI---DRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKH 117
Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ-VDGVYSADPRVHASSTRF 184
L +GKVVIFSGGTGN F TTD+AAALRA EI ADVILKGT VDGVY+ADP+ + + ++
Sbjct: 118 LEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKY 177
Query: 185 DSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
+++TYN+ ++K LKVMD + LARD ++PI+VF+I PG + + G G T++S
Sbjct: 178 ETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233
>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional.
Length = 231
Score = 188 bits (480), Expect = 1e-48
Identities = 96/234 (41%), Positives = 137/234 (58%), Gaps = 7/234 (2%)
Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66
KRVLLK+SGEAL+G G D + VN + +I V G +IGIV+G GN+FRG ++
Sbjct: 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELKE- 59
Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIF-MPQVCEVFSCRNAVSY 125
+ D +GML TVINAL L K + VI+S I +P V E + + Y
Sbjct: 60 ----LSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQIVNLPSV-EPINYDDIELY 114
Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185
G +VIF+GGT N F TTD+AAALRA E+ AD+++K T+VDG+Y DP+ + + D
Sbjct: 115 FRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKID 174
Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239
LT+++ I+ GLKVMD + + + I I+V + PG + L G T++
Sbjct: 175 HLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLV 228
>gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional.
Length = 249
Score = 177 bits (451), Expect = 2e-45
Identities = 95/220 (43%), Positives = 139/220 (63%), Gaps = 2/220 (0%)
Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66
KR+LLK+SGE+L+ GFG++++S I I + G+E+ +VVGGGNI RG +
Sbjct: 16 KRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFG 75
Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126
N + R+T DSMGM++T+INALAL L V + S+ + + +V S L
Sbjct: 76 NKI--RRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQEL 133
Query: 127 SQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDS 186
++G+V+IF+GGTGN F+TTD+ A+LRA EIGAD +LK T V+GVY DP ++ + RFD
Sbjct: 134 AKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDK 193
Query: 187 LTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGI 226
+T+++ + K L VMD + RD IPI VF + P +
Sbjct: 194 VTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNAL 233
>gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional.
Length = 247
Score = 168 bits (427), Expect = 1e-42
Identities = 93/237 (39%), Positives = 138/237 (58%), Gaps = 5/237 (2%)
Query: 5 PYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVV 64
PYKRVL+K+SG ALA +G + + I +I + GIE+ IV+GGGNIFRG
Sbjct: 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHL-- 60
Query: 65 AENYLLCERSTVDSMGMLSTVINALALDLAL-RKINVPTVILSSIFMPQVCEVFSCRNAV 123
AE + + +R D++G L T+IN+L L L K N +++SI V E + AV
Sbjct: 61 AEEWGI-DRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAV 119
Query: 124 SYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQ-VDGVYSADPRVHASST 182
+L G +VIF GG G F+TTD + RA E+ +D IL Q VDGV+++DP+ + S+
Sbjct: 120 HHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAK 179
Query: 183 RFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239
+ L YN + + ++VMD A+++LARD ++P VF+ PG + G T+I
Sbjct: 180 MYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLI 236
>gnl|CDD|162687 TIGR02076, pyrH_arch, uridylate kinase, putative. This family
consists of the archaeal and spirochete proteins most
closely related to bacterial uridylate kinases
(TIGR02075), an enzyme involved in pyrimidine
biosynthesis. Members are likely, but not known, to be
functionally equivalent to their bacterial counterparts.
However, substantial sequence differences suggest that
regulatory mechanisms may be different; the bacterial
form is allosterically regulated by GTP.
Length = 221
Score = 85.8 bits (213), Expect = 1e-17
Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 29/240 (12%)
Query: 9 VLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAENY 68
+++ + G L+ +D + + A+I + ++G+VVGGG R VA
Sbjct: 1 IVISLGGSVLSP----EIDAEFIKEF-ANILRKLSDEHKVGVVVGGGKTARRYIGVAREL 55
Query: 69 LLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYLSQ 128
E + +D +G+ +T +NA+ L AL P V + A+ +S
Sbjct: 56 GASE-TFLDEIGIDATRLNAMLLIAALGDDAYPKV------------PENFEEALEAMSL 102
Query: 129 GKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLT 188
GK+V+ GGT TTD+ AAL A AD+++ T VDGVY DP+ + +FD LT
Sbjct: 103 GKIVV-MGGTHPGH-TTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLT 160
Query: 189 YNQFIE--------KGLK-VMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239
+ +E G V+D + + I IV + P + L G TII
Sbjct: 161 PEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220
>gnl|CDD|161982 TIGR00657, asp_kinases, aspartate kinase. The Lys-sensitive enzyme
of Bacillus subtilis resembles the E. coli form but is
an alpha 2/beta 2 heterotetramer, where the beta subunit
is translated from an in-phase alternative initiator at
Met-246. This may be a feature of a number of closely
related forms, including a paralog from B. subtilis.
Length = 441
Score = 59.7 bits (145), Expect = 6e-10
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 125 YLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADP 175
L +G + + F G T TT D AAL A+ + AD T VDG+Y+ DP
Sbjct: 164 LLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDP 223
Query: 176 RVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP 223
R+ + R D ++Y + +E G KV+ ++ A IPI+V S +P
Sbjct: 224 RIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNP 274
>gnl|CDD|161981 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class.
The Lys-sensitive enzyme of Bacillus subtilis resembles
the E. coli form but is an alpha 2/beta 2
heterotetramer, where the beta subunit is translated
from an in-phase alternative initiator at Met-246. The
protein slr0657 from Synechocystis PCC6803 is extended
by a duplication of the C-terminal region corresponding
to the beta chain. Incorporation of a second copy of the
C-terminal domain may be quite common in this subgroup
of aspartokinases.
Length = 401
Score = 59.7 bits (145), Expect = 6e-10
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 126 LSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPR 176
L +G +V+ F G T + TT D AAL A+ + AD + T V GVY+ DPR
Sbjct: 126 LEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPR 185
Query: 177 VHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG 225
V ++ R D ++Y + +E G KV+ +V A +PI V S P
Sbjct: 186 VVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPEE 237
>gnl|CDD|181293 PRK08210, PRK08210, aspartate kinase I; Reviewed.
Length = 403
Score = 57.2 bits (139), Expect = 3e-09
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 14/118 (11%)
Query: 119 CRNAVSYLSQGKVVI---FSGGTGNAFLTT------D-SAAALRASEIGADVILKGTQVD 168
+ L +G VV+ F G T N +TT D +AAAL + + A+ + T VD
Sbjct: 123 PDRILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVA-LKAEYVDIYTDVD 181
Query: 169 GVYSADPRVHASSTRFDSLTYN---QFIEKGLKVMDCASVVLARDCSIPIIVFSIHSP 223
G+ +ADPR+ + D ++YN Q +G KV+ +V +A +IP+ + S +S
Sbjct: 182 GIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSD 239
>gnl|CDD|180641 PRK06635, PRK06635, aspartate kinase; Reviewed.
Length = 404
Score = 53.2 bits (129), Expect = 5e-08
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 124 SYLSQGKVVI---FSGGTGNAFLTT------D-SAAALRASEIGADVILKGTQVDGVYSA 173
L +G VV+ F G + +TT D +A AL A+ + AD T VDGVY+
Sbjct: 123 EALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAA-LKADECEIYTDVDGVYTT 181
Query: 174 DPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSPGG---IW 227
DPR+ + + D ++Y + +E G KV+ SV A+ ++P+ V S S I
Sbjct: 182 DPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSDNPGTLIT 241
Query: 228 GGLSGIGRSTIISG 241
G I +++G
Sbjct: 242 GEEEEIMEQPVVTG 255
>gnl|CDD|180976 PRK07431, PRK07431, aspartate kinase; Provisional.
Length = 587
Score = 48.0 bits (115), Expect = 2e-06
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 124 SYLSQGKVVIFSGGTG-----NAFLTT-------DSAAALRASEIGADVILKGTQVDGVY 171
+L GKVV+ +G G N +TT SA AL A+ +GAD T V GV
Sbjct: 123 RHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVAL-AAALGADACEIYTDVPGVL 181
Query: 172 SADPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFS 219
+ DPR+ + D ++ ++ +E G V+ +V +AR+ +P++V S
Sbjct: 182 TTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRS 232
>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated.
Length = 392
Score = 47.1 bits (112), Expect = 4e-06
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 126 LSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPR 176
L Q ++VI F G N +TT D+ A A + AD T VDGVY+ DPR
Sbjct: 125 LEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPR 184
Query: 177 VHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFS 219
V ++ + D + + KG KV+ SV A S+P+ V S
Sbjct: 185 VVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLS 230
>gnl|CDD|181643 PRK09084, PRK09084, aspartate kinase III; Validated.
Length = 448
Score = 43.3 bits (103), Expect = 6e-05
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 119 CRNAVSYLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDG 169
+ + L VV+ F G TT D +AAL A + A + T V G
Sbjct: 164 AQEQLLPLLAEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPG 223
Query: 170 VYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLARDCSIPIIVFSIHSP--G 224
+Y+ DPR+ ++ R D +++ + E G KV+ A+++ A +IP+ V S P G
Sbjct: 224 IYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAG 283
Query: 225 GIW 227
G W
Sbjct: 284 GTW 286
>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine
dehydrogenase I; Provisional.
Length = 819
Score = 42.1 bits (100), Expect = 1e-04
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 125 YLSQGKVVI---FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADP 175
++ V++ F+ G L T D +AA+ A+ + AD T VDGVY+ADP
Sbjct: 178 FIPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADP 237
Query: 176 RVHASSTRFDSLTYNQFIE 194
RV + SL+Y + +E
Sbjct: 238 RVVPDARLLKSLSYQEAME 256
>gnl|CDD|180515 PRK06291, PRK06291, aspartate kinase; Provisional.
Length = 465
Score = 41.8 bits (99), Expect = 1e-04
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 134 FSGGTGNAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187
F G T +TT D +AA+ + + AD I T VDGV + DPR+ + +
Sbjct: 196 FIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKI 255
Query: 188 TYNQFIEK---GLKVMDCASVVLARDCSIPIIV 217
+Y + +E G KV+ ++ A + IP+ V
Sbjct: 256 SYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRV 288
>gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate
decarboxylase protein; Provisional.
Length = 861
Score = 41.2 bits (97), Expect = 2e-04
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
Query: 145 TDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIE---KGLKVMD 201
+D++AA A+++GA + T V G++SA+P+ + L Y++ E G KV+
Sbjct: 215 SDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLH 274
Query: 202 CASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIISGE 242
S+ RD IP+ + P LSG T I G+
Sbjct: 275 PRSIKPCRDAGIPMAILDTERP-----DLSG----TSIDGD 306
>gnl|CDD|135659 PRK05925, PRK05925, aspartate kinase; Provisional.
Length = 440
Score = 37.5 bits (87), Expect = 0.003
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 15/119 (12%)
Query: 120 RNAVSYLSQGKVVIFSGGTGNAFLT------TDSAAALRASEIGADVILKGTQVDGVYSA 173
+ Y+ QG F G + T +D +A+L A A + T V+G+Y+
Sbjct: 163 QEDAIYIMQG----FIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTM 218
Query: 174 DPRVHASSTRFDSLTYNQFIE---KGLKVMDCASVVLARDCSIPIIVFSIHSP--GGIW 227
DP++ + L++ + G KV+ + IPI V S GG W
Sbjct: 219 DPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTW 277
>gnl|CDD|180076 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.
Length = 372
Score = 37.0 bits (87), Expect = 0.004
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 146 DSAAALRASEIGAD--VILKGTQVDGVYSADPRVHASSTRFD 185
D+ +AL A+ + AD ++L T VDG+Y+ADPR + +
Sbjct: 154 DTLSALVANLVEADLLILL--TDVDGLYTADPRKNPDAKLIP 193
Score = 28.1 bits (64), Expect = 2.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVV 52
+R+++KV L G G G+D + + IA + A G E+ ++V
Sbjct: 8 ARRIVVKVGSSLLTGGGG-GLDRARIAELARQIAALRAAGHEV-VLV 52
>gnl|CDD|178166 PLN02551, PLN02551, aspartokinase.
Length = 521
Score = 37.0 bits (86), Expect = 0.005
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 10/86 (11%)
Query: 151 LRASEIGADVILKGTQ----VDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCA 203
L A+ IG + L+ Q VDGV + DPR++ ++ LT+++ E G +V+
Sbjct: 260 LTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQ 319
Query: 204 SVVLARDCSIPIIV---FSIHSPGGI 226
S+ AR+ IP+ V ++ +PG +
Sbjct: 320 SMRPAREGDIPVRVKNSYNPTAPGTL 345
>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase. Bacterial ProB proteins hit
the full length of this model, but the ProB-like domain
of delta 1-pyrroline-5-carboxylate synthetase does not
hit the C-terminal 100 residues of this model. The noise
cutoff is set low enough to hit delta
1-pyrroline-5-carboxylate synthetase and other partial
matches to this family.
Length = 363
Score = 36.9 bits (86), Expect = 0.005
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 146 DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYNQFIEKGLKVM 200
D+ +AL A +GAD+++ T VDG+Y ADPR + + + I L +
Sbjct: 146 DTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIP---VVEEITDLLLGV 197
>gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed.
Length = 307
Score = 36.3 bits (85), Expect = 0.007
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 14/60 (23%)
Query: 126 LSQGKVVIFSGGTG--------------NAFLTTDSAAALRASEIGADVILKGTQVDGVY 171
L +G +VI +GG G A + D AAAL A ++ AD++L T VD VY
Sbjct: 172 LEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVY 231
>gnl|CDD|178039 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase.
Length = 718
Score = 35.5 bits (82), Expect = 0.012
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 142 FLTTDSAAALRASEIGADVILKGTQVDGVYSADP 175
F DS AAL A E+ AD+++ + V+G+Y+ P
Sbjct: 174 FWDNDSLAALLALELKADLLILLSDVEGLYTGPP 207
>gnl|CDD|181831 PRK09411, PRK09411, carbamate kinase; Reviewed.
Length = 297
Score = 34.8 bits (80), Expect = 0.023
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 126 LSQGKVVIFSGGTG----------NAFLTTDSAAALRASEIGADVILKGTQVDGVY 171
L +G VVI SGG G A + D AAAL A +I AD ++ T D VY
Sbjct: 173 LKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVY 228
>gnl|CDD|162019 TIGR00746, arcC, carbamate kinase. The seed alignment for this
model includes experimentally confirmed examples from a
set of phylogenetically distinct species. In a
neighbor-joining tree constructed from an alignment of
candidate carbamate kinases and several acetylglutamate
kinases, the latter group forms a clear outgroup which
roots the tree of carbamate kinase-like proteins. This
analysis suggests that in E. coli, the ArcC paralog YqeA
may be a second isozyme, while the paralog YahI branches
as an outlier and is less likely to be an authentic
carbamate kinase. The homolog from Mycoplasma pneumoniae
likewise branches outside the set containing known
carbamate kinases and also scores below the trusted
cutoff.
Length = 310
Score = 34.4 bits (79), Expect = 0.029
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 13/59 (22%)
Query: 126 LSQGKVVIFSGGTG-------------NAFLTTDSAAALRASEIGADVILKGTQVDGVY 171
+ G +VI SGG G A + D A+ A E+ AD+++ T VD VY
Sbjct: 179 VENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVY 237
>gnl|CDD|183535 PRK12454, PRK12454, carbamate kinase-like carbamoyl phosphate
synthetase; Reviewed.
Length = 313
Score = 33.4 bits (77), Expect = 0.047
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 13/59 (22%)
Query: 126 LSQGKVVIFSGGTG-------------NAFLTTDSAAALRASEIGADVILKGTQVDGVY 171
+ G +VI SGG G A + D A+ L A E+ AD+ + T V+ VY
Sbjct: 182 VENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVY 240
>gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional.
Length = 368
Score = 31.9 bits (73), Expect = 0.14
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 146 DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLT 188
D+ +A+ A+ AD ++ + +DG+Y +PR + + +T
Sbjct: 150 DNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVT 192
>gnl|CDD|181617 PRK09034, PRK09034, aspartate kinase; Reviewed.
Length = 454
Score = 31.7 bits (73), Expect = 0.16
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 14/57 (24%)
Query: 125 YLSQGKVVIFS-GG---TGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRV 177
G++V FS GG TG A+ A + AD+ T VDG+Y+A+PR+
Sbjct: 185 VTKDGQIVTFSRGGSDITG----------AILARGVKADLYENFTDVDGIYAANPRI 231
>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit,
putative. This family consists of proteins restricted
to and found as paralogous pairs (typically close
together) in species of Pyrococcus, a hyperthermophilic
archaeal genus. Members are always found close to other
genes of threonine biosynthesis and appear to represent
the Pyrococcal form of aspartate kinase. Alignment to
aspartokinase III from E. coli shows that 300 N-terminal
and 20 C-terminal amino acids are homologous, but the
form in Pyrococcus lacks ~ 100 amino acids in between.
Length = 327
Score = 31.3 bits (71), Expect = 0.23
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 126 LSQGKVVIFSGGTG--NAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRV 177
L GK+ + G G N + T D +A + + ++ + V+G+++ADP++
Sbjct: 154 LESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKL 213
Query: 178 HASSTRFDSLTYNQFI---EKGLKVMDCASVVLARDCSIPII 216
S+ L+Y + + G+K + + LA++ IP++
Sbjct: 214 VPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVL 255
>gnl|CDD|183465 PRK12353, PRK12353, putative amino acid kinase; Reviewed.
Length = 314
Score = 31.3 bits (72), Expect = 0.26
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 126 LSQGKVVIFSGG-------TGNAFLTT------DSAAALRASEIGADVILKGTQVDGVY 171
+ G+VVI +GG G D A+A A + AD+++ T VD VY
Sbjct: 182 VDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVY 240
>gnl|CDD|181881 PRK09466, metL, bifunctional aspartate kinase II/homoserine
dehydrogenase II; Provisional.
Length = 810
Score = 30.3 bits (69), Expect = 0.46
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 117 FSCRNAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPR 176
F RN G+ V+ G G +D +A L + G + + + V GVYSADPR
Sbjct: 193 FISRN-----EAGETVLL-GRNG-----SDYSATLIGALAGVERVTIWSDVAGVYSADPR 241
>gnl|CDD|183464 PRK12352, PRK12352, putative carbamate kinase; Reviewed.
Length = 316
Score = 30.2 bits (68), Expect = 0.57
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 124 SYLSQGKVVIFSGGTG--------------NAFLTTDSAAALRASEIGADVILKGTQVDG 169
+ + QG VVI +GG G +A + D + AL A EI AD+++ T V+
Sbjct: 181 ALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEK 240
Query: 170 V 170
V
Sbjct: 241 V 241
>gnl|CDD|185667 PTZ00489, PTZ00489, glutamate 5-kinase; Provisional.
Length = 264
Score = 29.2 bits (65), Expect = 1.0
Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 10/176 (5%)
Query: 7 KRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVAE 66
KR+++KV L + + + +C IA++ K E+ +V G ++ +
Sbjct: 9 KRIVVKVGSSIL--VDNQEIAAHRIEALCRFIADLQTK-YEVILVTSGAVAAGYTKKEMD 65
Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSYL 126
+ + + SMG +++ +L I ++L++ + + N + L
Sbjct: 66 KSYVPNKQALASMGQ-PLLMHMYYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVL 124
Query: 127 SQGKVV-IFSGGTGNA-----FLTTDSAAALRASEIGADVILKGTQVDGVYSADPR 176
KV+ I + A F D +AL A AD+++ + +DG Y+ +PR
Sbjct: 125 ISHKVIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPR 180
>gnl|CDD|169408 PRK08373, PRK08373, aspartate kinase; Validated.
Length = 341
Score = 29.3 bits (66), Expect = 1.0
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 126 LSQGKVVIFSGGTG--NAFLTT------DSAAALRASEIGADVILKGTQVDGVYSADPRV 177
L +G+V + G G N F T D +A + A +L + V+G+Y+ADP++
Sbjct: 164 LERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKL 223
Query: 178 HASSTRFDSLTYNQFI---EKGLKVMDCASVVLARDCSIPII 216
S+ L+Y++ + + G+K + ++ + IPII
Sbjct: 224 VPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG-KIPII 264
>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase. This
protein contains a glutamate 5-kinase (ProB, EC
2.7.2.11) region followed by a gamma-glutamyl phosphate
reductase (ProA, EC 1.2.1.41) region.
Length = 715
Score = 28.3 bits (63), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 142 FLTTDSAAALRASEIGADVILKGTQVDGVYSADP 175
F DS AAL A E+ AD+++ + V+G+Y P
Sbjct: 166 FWDNDSLAALLALELKADLLILLSDVEGLYDGPP 199
>gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional.
Length = 258
Score = 28.0 bits (63), Expect = 2.4
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 126 LSQGKVVIFSG-GTGNAFLTTDSAAALRASEIGADVIL 162
L +GKVV+ SG G G L A+RA+ GADV+L
Sbjct: 2 LLKGKVVVVSGVGPG---LGR--TLAVRAARAGADVVL 34
>gnl|CDD|182181 PRK09983, pflD, putative formate acetyltransferase 2; Provisional.
Length = 765
Score = 27.9 bits (62), Expect = 2.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 24 FGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
+G DID V+ I A++ Y K +E GG GS V+
Sbjct: 579 YGNDIDEVDNISAELLRHYCKEVEKYQNPRGGYFTPGSYTVS 620
>gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional.
Length = 266
Score = 27.5 bits (62), Expect = 2.9
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 146 DSAAALRASEIGAD--VILKGTQVDGVYSADPRVHASSTRFD 185
D +A+ A + AD +IL + +DG+Y +PR++ +
Sbjct: 157 DRLSAIVAKLVKADLLIIL--SDIDGLYDKNPRINPDAKLRS 196
>gnl|CDD|163263 TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain.
Members of this family are bacterial domains that
include a region related to the von Willebrand factor
type A (VWFA) domain (pfam00092). These domains are
restricted to, and have undergone a large paralogous
family expansion in, the Acidobacteria, including
Solibacter usitatus and Acidobacterium capsulatum ATCC
51196.
Length = 296
Score = 27.3 bits (61), Expect = 3.8
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLTYN 190
+++ S G N T A A ADV +YS D R +
Sbjct: 168 LIVISDGGDNRSRDTLERAIDAAQR--ADVA--------IYSIDARGLRAPDLGAGAKAG 217
Query: 191 QFIEKGLKVM 200
+ L+ +
Sbjct: 218 LGGPEALERL 227
>gnl|CDD|181017 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 27.2 bits (61), Expect = 3.8
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 50 IVVGGGNIFRGSQVVAENYLLCERSTVDSMGMLSTVINALA 90
+V+ +RG V+A + + ER ++ + + TV AL
Sbjct: 283 VVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALL 323
>gnl|CDD|181289 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 26.5 bits (59), Expect = 5.6
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 128 QGKVVIF-SGGTGNAFLTTDSAAAL 151
K V+F +GG+G + TT +A L
Sbjct: 194 HAKAVVFATGGSGRVYKTTSNAHTL 218
>gnl|CDD|183777 PRK12828, PRK12828, short chain dehydrogenase; Provisional.
Length = 239
Score = 26.3 bits (58), Expect = 6.8
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSL 187
QGKVV +GG G T AA L + GA V L G + P V A + R +
Sbjct: 6 QGKVVAITGGFGGLGRAT--AAWL--AARGARVALIGRGAAPLSQTLPGVPADALRIGGI 61
>gnl|CDD|162026 TIGR00761, argB, acetylglutamate kinase. This model describes
N-acetylglutamate kinases (ArgB) of many prokaryotes and
the N-acetylglutamate kinase domains of multifunctional
proteins from yeasts. This enzyme is the second step in
the "acetylated" ornithine biosynthesis pathway. A
related group of enzymes representing the first step of
the pathway contain a homologous domain and are excluded
from this model.
Length = 231
Score = 26.1 bits (58), Expect = 8.0
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 146 DSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFDSLT---YNQFIEKGL----- 197
D+AA A+ +GA+ ++ T V G+ + D + + Q IE+G+
Sbjct: 157 DTAAGALAAALGAEKLVLLTDVPGILNGDG-----QSLISEIPLEEIEQLIEQGIITGGM 211
Query: 198 --KVMDCASVV 206
KV +
Sbjct: 212 IPKVNAALEAL 222
>gnl|CDD|179793 PRK04220, PRK04220, 2-phosphoglycerate kinase; Provisional.
Length = 301
Score = 26.1 bits (58), Expect = 8.1
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 187 LTYNQFIEKGLKVMDCASVVLA----RDCSIPIIVFSIHSPGGIWGGLSGIGRSTI 238
Y + IEK + + A L R PII+ + GG SG+G STI
Sbjct: 63 RVYYKLIEKDYE--EVAEKYLLWRRIRKSKEPIII--------LIGGASGVGTSTI 108
>gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional.
Length = 456
Score = 26.2 bits (58), Expect = 8.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 225 GIWGGLSGIGRSTIISGE 242
G++GG G G T+I E
Sbjct: 304 GVYGGFQGEGTKTVIPAE 321
>gnl|CDD|161886 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori.
Length = 566
Score = 25.8 bits (57), Expect = 9.5
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 129 GKVVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162
+V+ S GT +LT D A L E G D ++
Sbjct: 299 DRVLQKSDGTYL-YLTRDIAYHLDKLERGFDKMI 331
>gnl|CDD|181345 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 26.0 bits (58), Expect = 9.7
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 131 VVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162
+VI G GNA L AAL A E GA V+L
Sbjct: 8 LVI---GGGNAALC----AALAAREAGASVLL 32
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.138 0.395
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,909,715
Number of extensions: 247366
Number of successful extensions: 709
Number of sequences better than 10.0: 1
Number of HSP's gapped: 687
Number of HSP's successfully gapped: 59
Length of query: 242
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,028,145
Effective search space: 608249895
Effective search space used: 608249895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)