RPSBLAST alignment of GI: 254780777 and protein with PDBid: 1ybd
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, protein structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239
Score = 142 bits (358), Expect = 7e-35
Identities = 106/234 (45%), Positives = 158/234 (67%), Gaps = 3/234 (1%)
Query: 6 YKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRGSQVVA 65
YKRVLLK+SGE+L G FG++ D++ + +IAEV G+++GIVVGGGNIFRG A
Sbjct: 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQA 66
Query: 66 ENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCRNAVSY 125
+ +R+T D MGM++TV+NALAL A + + + S++ M Q+ E ++ A+ Y
Sbjct: 67 GS---MDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQY 123
Query: 126 LSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHASSTRFD 185
L +GKVVIF+ GTGN F TTD+AAALR +E+ DV+LK T VDGVY+ADP+ S+TR++
Sbjct: 124 LEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYE 183
Query: 186 SLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTII 239
++T+++ + K LKVMD + L R+ + I+VF I G + ++G T++
Sbjct: 184 TITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 237