BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780777|ref|YP_003065190.1| uridylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(242 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780777|ref|YP_003065190.1| uridylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 242
Score = 484 bits (1247), Expect = e-139, Method: Compositional matrix adjust.
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60
MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG
Sbjct: 1 MSDFPYKRVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNIFRG 60
Query: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120
SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR
Sbjct: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFMPQVCEVFSCR 120
Query: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180
NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS
Sbjct: 121 NAVSYLSQGKVVIFSGGTGNAFLTTDSAAALRASEIGADVILKGTQVDGVYSADPRVHAS 180
Query: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS
Sbjct: 181 STRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGGIWGGLSGIGRSTIIS 240
Query: 241 GE 242
GE
Sbjct: 241 GE 242
>gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 411
Score = 40.4 bits (93), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 32/225 (14%)
Query: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG--GNIFRGSQVVA 65
R+++K G ++A +ID + + +G E+ +VV G R +++
Sbjct: 3 RIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR 55
Query: 66 ENYLL---CERSTVDSMG-MLSTVINALALD------LALRKINVPTVILSSIFMPQVCE 115
+ + ER V S G +S+ + LAL ++L+ +P + S M ++C
Sbjct: 56 QVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICR 115
Query: 116 VFSCRNAVSYLSQGKVVIFSGGTG----NAFLT-----TDSAAALRASEIGADVILKGTQ 166
V + V++L + +VV+ +G G N+ T +D++A A+ I AD T
Sbjct: 116 VDE-KKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTD 174
Query: 167 VDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLA 208
V G+Y+ DPR+ + +++ + +E G KVM SV LA
Sbjct: 175 VCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELA 219
>gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 817
Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIFM 110
+Q VA+N+LL T+D + ++ + L+ A K + L+ IF
Sbjct: 130 TQQVAKNFLLTSNQTMDR--KIKEILLSFRLEKAYDKEKILEFYLNEIFF 177
>gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 401
Score = 24.6 bits (52), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 67 NYLLCERSTVDSMGMLSTVINALALDLALRKINVPTVILSSIF--------MPQVCEVFS 118
N C++ + + N A DL++ KI +I SI+ + ++C++
Sbjct: 149 NKARCKKVIWNHNDLEDLEKNLAATDLSIPKI----IIFESIYSMDGDIAPIKEICDLAD 204
Query: 119 CRNAVSYLSQGKVVIFSGGTG 139
NA++Y+ + V G G
Sbjct: 205 QYNAITYIDEVHAVGIHGSCG 225
>gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 562
Score = 23.1 bits (48), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 169 GVYSADPRVHASSTRFDSLTYNQFIEKGLKVMDCASVVLARDCSIPIIVFSIHSPGG 225
YS+D + A F S+ + + G V+ C + LAR + + PGG
Sbjct: 35 NAYSSDSLLVALIANFPSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGG 91
>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 699
Score = 22.7 bits (47), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 128 QGKVVIFSGGTGNAFLTTDSAAALRASEIGADVIL 162
QG + +F GT +A L + L A+++ DV+L
Sbjct: 171 QGSLDLFVSGTQDAVLMVE----LEANQLSEDVVL 201
>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 890
Score = 21.9 bits (45), Expect = 9.7, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 61 SQVVAENYLLCERSTVDSMGMLSTVINALALDLALRKINVPT 102
S + +NY L R G ST LA L I VPT
Sbjct: 363 SSITFQNYFLKYRKLSGMTGTASTEAEELANIYNLDVIEVPT 404
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,401
Number of Sequences: 1233
Number of extensions: 5979
Number of successful extensions: 31
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 13
length of query: 242
length of database: 328,796
effective HSP length: 71
effective length of query: 171
effective length of database: 241,253
effective search space: 41254263
effective search space used: 41254263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)