HHsearch alignment for GI: 254780778 and conserved domain: TIGR00116

>TIGR00116 tsf translation elongation factor Ts; InterPro: IPR001816 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) . This entry represents EF-Tu (EF1A) proteins found primarily in bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular.
Probab=100.00  E-value=0  Score=649.23  Aligned_cols=284  Identities=39%  Similarity=0.579  Sum_probs=266.5

Q ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC--CEEEEEEE
Q ss_conf             9735589999999871999899999999629998999999998238899865103364220000440788--53699998
Q gi|254780778|r    1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYK--KASIVEVN   78 (296)
Q Consensus         1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~--~a~liEin   78 (296)
T Consensus         1 M~~i~a~lVKeLR~~T~AGmMDCKKAL~~~~GD~ekAi~~LRe~G~~KAaKKadrvAaEG~i~~~~~~-~fk~a~~vEvN   79 (364)
T TIGR00116         1 MMAITAQLVKELRERTGAGMMDCKKALVEANGDLEKAIDNLREKGIAKAAKKADRVAAEGVILLKSDN-NFKKAVIVEVN   79 (364)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHCCCEECCCEEEEEECC-CCCEEEEEEEC
T ss_conf             97777999998874058883136787521268388999997131733576520780004768887718-74157899972


Q ss_pred             EECCHHHCCHHHHHHHHHHHH--HHHHCC-CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CEE
Q ss_conf             403101022679999998887--531033-5657786400410000146778999985434310244431022221-000
Q gi|254780778|r   79 VETDSLAKNTDFQSLVSNIAG--IALSTD-GSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEG-VIS  154 (296)
Q Consensus        79 cETDFVAkn~~F~~l~~~i~~--~~l~~~-~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~-~v~  154 (296)
T Consensus        80 seTDFVAkn~gf~~f~~~~~~~~~~~a~~~~~~e~~~~~~l~-n~~~v~E~l~~~~AkigEnI~~Rr~~~l~~~~n~~i~  158 (364)
T TIGR00116        80 SETDFVAKNEGFKEFANKLLDKVFLKANKITTVEELQKQELE-NKEKVEEYLASLVAKIGENIVLRRVAVLEGQSNEVIG  158 (364)
T ss_pred             CCCCHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCHHHHH
T ss_conf             766555623358999999999999871786066787775520-5762787787665542352278999997167568887


Q ss_pred             EECCC-CCCCCHHHHHHHHHHCCC--C-CHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHH-----HHHHHH---
Q ss_conf             00135-323460344344430354--3-21578999885655667654332045878362777766-----566677---
Q gi|254780778|r  155 SYLHA-SPSEGLGSIGVLVALQSS--A-EDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANK-----RAHYMT---  222 (296)
Q Consensus       155 ~Y~H~-~~~~~~GkigvlV~l~~~--~-~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~E-----k~i~~~---  222 (296)
T Consensus       159 ~YlH~e~-----~rIGVL~~~~g~df~~~~~~~~~e~~k~~AmHvAA~~P~fi~~~dV~~~~~~~Etlali~~I~~~nee  233 (364)
T TIGR00116       159 SYLHAEN-----ARIGVLVELKGKDFSDEEDKIVKELAKDLAMHVAASKPQFIDQDDVSQEVVKKETLALIREIITDNEE  233 (364)
T ss_pred             HHHCCCC-----CEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5312378-----72689988711231101012577766458888886188056724578778888999999999741145


Q ss_pred             --------------------------------HHHCCCC--HH--HHHHHHHHHHHHHHHHH-------HHHCCCCCCCC
Q ss_conf             --------------------------------6312578--67--89977740167666423-------33025600027
Q gi|254780778|r  223 --------------------------------EALDSGK--SG--NIVEKIVNGKMQSFCKE-------CVLLHQGFVVD  259 (296)
Q Consensus       223 --------------------------------~~~~~gK--p~--~i~ekIv~Gkl~Kf~~E-------~~LleQ~fv~D  259 (296)
T Consensus       234 akrlGkPlkniPtfGsrielsdevlahqkkaf~a~~~gk~~P~ka~i~~K~V~Gr~~Kf~~entlidqr~~L~~Q~fv~d  313 (364)
T TIGR00116       234 AKRLGKPLKNIPTFGSRIELSDEVLAHQKKAFQAELEGKENPKKAEILEKIVEGRMKKFLAENTLIDQRISLLGQAFVMD  313 (364)
T ss_pred             HHHHCCCHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCEEEECCCEEEEC
T ss_conf             57515620213664531101367887668889999863178504457413334336666642123200121017614317


Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf             77439999987764207982899889876224
Q gi|254780778|r  260 PSKTVSDFLKESEKSIGASIEVVGVSHFVVGK  291 (296)
Q Consensus       260 ~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE  291 (296)
T Consensus       314 ~~~tv~q~l~e~SK~~~~~~~v~~F~R~EvGE  345 (364)
T TIGR00116       314 DKKTVGQFLKEISKAISKNAKVTEFVRFEVGE  345 (364)
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEEEEEECC
T ss_conf             86538999999987752485288889887537