HHsearch alignment for GI: 254780778 and conserved domain: cd00194
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=95.39 E-value=0.032 Score=35.55 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=30.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999999987199989999999962999899999999
Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296)
Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296)
T Consensus 3 ~~v~~L~~-MGF~~~~~~~AL~~~~~n~e~A~~~Ll 37 (38)
T cd00194 3 EKLEQLLE-MGFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 98999998-599999999999985899999999873