HHsearch alignment for GI: 254780778 and conserved domain: pfam00627
>pfam00627 UBA UBA/TS-N domain. This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin and the ubiquitination pathway. The structure of the UBA domain consists of a compact three helix bundle. This domain is found at the N terminus of EF-TS hence the name TS-N. The structure of EF-TS is known and this domain is implicated in its interaction with EF-TU. The domain has been found in non EF-TS proteins such as alpha-NAC and MJ0280.
Probab=97.66 E-value=6.6e-05 Score=53.45 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 5899999998719998999999996299989999999
Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41 (296)
Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296)
T Consensus 2 ~~~~i~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T pfam00627 2 DEELIKQLREM-GFSREEAKKALRATNGNVERAVEYL 37 (37)
T ss_pred CHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 88999999990-9999999999998279999997549