HHsearch alignment of GI: 254780778 and MMDB domain: 1vg5_A_
>1vg5_A (A:) RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana}
Probab=96.16 E-value=0.011 Score=38.28 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 3558999999987199989999999962999899999999
Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296)
Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296)
.+....|.+|.++ |..--.|++||..|+||+|.|++||=
T Consensus 27 ~~~e~~i~~L~~M-GF~~~~a~~AL~~~~~nve~A~~~Ll 65 (73)
T 1vg5_A 27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILM 65 (73)
T ss_dssp CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 8689999999993-99999999999995899999999998