HHsearch alignment of GI: 254780778 and MMDB domain: 1vg5_A_

>1vg5_A (A:) RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana}
Probab=96.16  E-value=0.011  Score=38.28  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=33.6

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             3558999999987199989999999962999899999999
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR   42 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR   42 (296)
                      .+....|.+|.++ |..--.|++||..|+||+|.|++||=
T Consensus        27 ~~~e~~i~~L~~M-GF~~~~a~~AL~~~~~nve~A~~~Ll   65 (73)
T 1vg5_A           27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILM   65 (73)
T ss_dssp             CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             8689999999993-99999999999995899999999998