HHsearch results for GI: 254780778 and protein with PDBid: 3agp_A
>3agp_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase; 2.80A {Escherichia coli O157} PDB: 3agq_A
Probab=100.00 E-value=0 Score=681.71 Aligned_cols=263 Identities=40% Similarity=0.590 Sum_probs=247.0
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEE
Q ss_conf 97355899999998719998999999996299989999999982388998651033642200004407885369999840
Q gi|254780778|r 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVE 80 (296)
Q Consensus 1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~a~eG~v~~~~~~~~~a~liEincE 80 (296)
||+|||++||+||++||||||||||||+|++||+|+|++|||+||+++|+||++|.|+||+|+++.++ +.|+|+|||||
T Consensus 1 Ma~ITA~~VKeLRe~TGAGMMDCKkAL~E~~GD~ekAie~LRkkG~a~AaKKa~R~aaEGli~~~~~~-~~~~lvEvN~E 79 (1289)
T 3agp_A 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDG-NYGIILEVNCQ 79 (1289)
T ss_dssp -CCSCHHHHHHHHHHHCCCSHHHHHHHHTTTSCHHHHHHHHHHTTHHHHHHHTTSCCCEEEEEEEEET-TEEEEEEEEES
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC-CEEEEEEEECC
T ss_conf 98548999999998749948899999877588899999999986358777646610027549999739-87999999767
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 31010226799999988875310335657786400410000146778999985434310244431022221000001353
Q gi|254780778|r 81 TDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHAS 160 (296)
Q Consensus 81 TDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~~~v~~Y~H~~ 160 (296)
|||||||+.|++|++++++.++.++.+..+.+. .|++|.+.+++++|||||+|||+.++ +++++++|+|+
T Consensus 80 TDFVAkne~F~~l~~~i~~~~~~~~~~~~e~l~-------~~~~e~~~~~ia~iGEni~lrR~~~~--~~~~v~~Y~H~- 149 (1289)
T 3agp_A 80 TDFVAKDAGFQAFADKVLDAAVAGKITDVEVLK-------AQFEEERVALVAKIGENINIRRVAAL--EGDVLGSYQHG- 149 (1289)
T ss_dssp CHHHHTCHHHHHHHHHHHHHHHHTTCCSHHHHH-------HHHHHHHHHHHHHHCSCCEEEEEEEE--ECSEEEEEEET-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH-------HHHHHHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEECC-
T ss_conf 664227827999999999999855988899987-------07999999998760687799889997--28879999729-
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 23460344344430354321578999885655667654332045878362777766566677631257867899777401
Q gi|254780778|r 161 PSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240 (296)
Q Consensus 161 ~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~~i~ekIv~G 240 (296)
|||||||++++.++ +++|+||||||||+|.||++++||++++++|++|+++|++++|||++|++|||+|
T Consensus 150 -----~kIgvlV~~~~~~~------e~akdiAMhIAA~~P~~ls~~~vp~~vve~Er~i~~~qa~~~GKPe~I~eKIveG 218 (1289)
T 3agp_A 150 -----ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG 218 (1289)
T ss_dssp -----TTEEEEEEETTCCH------HHHHHHHHHHHTTCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -----CEEEEEEEECCCCH------HHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf -----97999999568759------9998899999853873188156999999999999999998739979999999878
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf 676664233302560002777439999987764207982899889876224
Q gi|254780778|r 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296)
Q Consensus 241 kl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296)
||+|||+|+|||+|+||+||++||++||++. +.+|++|+||+|||
T Consensus 219 rl~kf~~E~~Ll~Q~fVkD~~~tV~~~l~~~------~~~v~~F~R~evGE 263 (1289)
T 3agp_A 219 RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGE 263 (1289)
T ss_dssp HHHHHHHHTBGGGSBCTTSTTSBHHHHHHHT------TCCCCEEEEEETTT
T ss_pred HHHHHHHHHEECCCCEEECCCCCHHHHHHHC------CCEEEEEEEEEECC
T ss_conf 8887745632136850327963199999867------99799999997448