HHSEARCH alignment of GI: 254780778 and SCOP domain: d1veka_

Alignment

Probab=91.39  E-value=0.22  Score=27.01  Aligned_cols=40  Identities=20%  Similarity=0.333  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHCC-CCHHHHHHHHHHH
Q ss_conf             5589999999871999899999999629-9989999999982
Q gi|254780778|r    4 VSAVAVKELRGKTGAGIMDCKNALLEAK-GDSELAIDILRTK   44 (296)
Q Consensus         4 it~~~iK~LR~~Tgag~~dCKkAL~e~~-gD~e~Ai~~LRkk   44 (296)
                      +....|.+|-+ -|-+--.|++||..++ +|++.|++||-..
T Consensus        28 ~d~~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h   68 (84)
T d1veka_          28 ANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSH   68 (84)
T ss_dssp             CCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             99999999999-599999999999997699999999999986

SCOP domain information

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]