HHSEARCH alignment of GI: 254780778 and SCOP domain: d1vg5a_

Alignment
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=95.66  E-value=0.0097  Score=35.97  Aligned_cols=39  Identities=26%  Similarity=0.317  Sum_probs=33.0

Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             5589999999871999899999999629998999999998
Q gi|254780778|r    4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      ++-+.|.+|.++ |..--.|++||..|+||+|.|++||-.
T Consensus        28 ~~ee~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Ll~   66 (73)
T d1vg5a_          28 ASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMS   66 (73)
T ss_dssp             CCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHH-CCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             689999999995-899999999999918999999999982


SCOP domain information

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]