HHSEARCH alignment of GI: 254780778 and SCOP domain: d1wiva_

Alignment

Probab=94.89  E-value=0.029  Score=32.79  Aligned_cols=41  Identities=24%  Similarity=0.229  Sum_probs=34.1

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             355899999998719998999999996299989999999982
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      .+..+.|.+|=+ -|-+--.|++||..++||++.|++||-..
T Consensus        27 ~~d~~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~Av~~Lls~   67 (73)
T d1wiva_          27 DIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNN   67 (73)
T ss_dssp             SSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHH-CCCCHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf             989999999993-69999999999999299999999999818

SCOP domain information

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]