HHSEARCH alignment of GI: 254780778 and SCOP domain: d2dnaa1

Alignment

Probab=93.36  E-value=0.095  Score=29.39  Aligned_cols=38  Identities=21%  Similarity=0.205  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             99999998719998999999996299989999999982
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      ..+-+||++-=.---.|-+||..++||++.||+.|...
T Consensus        10 ~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~   47 (50)
T d2dnaa1          10 KEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS   47 (50)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             99999999499979999999999399899999999865

SCOP domain information

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]