Query         gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 296
No_of_seqs    132 out of 2145
Neff          6.2 
Searched_HMMs 13730
Date          Wed Jun  1 08:04:45 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780778.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1tfea_ d.43.1.1 (A:) Elongati 100.0 3.8E-42       0  298.3   9.4  138  149-291     2-142 (142)
  2 d1efub2 d.43.1.1 (B:140-282) E 100.0 2.7E-41 1.4E-45  292.7   8.3  123  152-292     2-124 (143)
  3 d1xb2b3 d.43.1.1 (B:223-331) E  99.9 3.4E-26 2.5E-30  192.1   4.5  102  150-291     1-108 (109)
  4 d1xb2b2 d.43.1.1 (B:112-222) E  99.9 7.8E-25 5.7E-29  183.0   4.5   96   54-150     1-111 (111)
  5 d1efub4 d.43.1.1 (B:55-139) El  99.8 6.3E-22 4.6E-26  163.7   4.3   84   56-147     1-84  (85)
  6 d1efub3 a.5.2.2 (B:1-54) Elong  99.8 7.7E-20 5.6E-24  149.8   7.5   54    2-55      1-54  (54)
  7 d1xb2b1 a.5.2.2 (B:56-111) Elo  99.8 2.1E-19 1.5E-23  147.0   6.8   55    2-56      1-55  (56)
  8 d1aipc1 a.5.2.2 (C:2-53) Elong  99.7 8.9E-19 6.5E-23  142.7   6.9   51    5-55      2-52  (52)
  9 d1tfea_ d.43.1.1 (A:) Elongati  99.0 4.1E-11   3E-15   91.7   3.5   92   57-148     1-140 (142)
 10 d1xb2b2 d.43.1.1 (B:112-222) E  98.3 2.4E-07 1.8E-11   66.6   4.8  103  148-289     4-109 (111)
 11 d1efub4 d.43.1.1 (B:55-139) El  96.6  0.0011 7.8E-08   42.3   4.3   80  148-288     2-84  (85)
 12 d1wjia_ a.5.2.1 (A:) Tudor dom  95.8  0.0076 5.5E-07   36.7   5.4   41    3-44      7-47  (63)
 13 d1vg5a_ a.5.2.1 (A:) Rhomboid   95.7  0.0097 7.1E-07   36.0   5.3   39    4-43     28-66  (73)
 14 d1wgna_ a.5.2.1 (A:) Ubiquitin  95.3   0.011 7.9E-07   35.6   4.5   38    6-44     20-57  (63)
 15 d1wj7a1 a.5.2.1 (A:8-98) Ubiqu  95.0   0.021 1.6E-06   33.7   5.3   39    7-45     34-72  (91)
 16 d1wiva_ a.5.2.1 (A:) Ubiquitin  94.9   0.029 2.1E-06   32.8   5.8   41    3-44     27-67  (73)
 17 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i  94.0   0.025 1.8E-06   33.2   3.9   37    5-42     12-49  (51)
 18 d1xb2b3 d.43.1.1 (B:223-331) E  94.0   0.015 1.1E-06   34.7   2.7   73   69-151    23-109 (109)
 19 d2daha1 a.5.2.1 (A:8-48) Ubiqu  93.8   0.069   5E-06   30.3   5.8   37    7-43      4-40  (41)
 20 d1whca_ a.5.2.1 (A:) UBA/UBX 3  93.6   0.036 2.7E-06   32.1   4.0   41    3-44      7-48  (64)
 21 d1veja1 a.5.2.1 (A:8-68) 49314  93.4   0.081 5.9E-06   29.8   5.6   37    6-42     23-59  (61)
 22 d2dnaa1 a.5.2.1 (A:12-61) Ubiq  93.4   0.095 6.9E-06   29.4   5.9   38    7-44     10-47  (50)
 23 d2bwba1 a.5.2.1 (A:328-371) DS  92.9   0.091 6.6E-06   29.5   5.2   35    7-41      7-41  (44)
 24 d1oqya1 a.5.2.1 (A:160-200) DN  92.8   0.029 2.1E-06   32.8   2.6   34    7-41      6-39  (41)
 25 d1veka_ a.5.2.1 (A:) Ubiquitin  91.4    0.22 1.6E-05   27.0   5.6   40    4-44     28-68  (84)
 26 d1vdla_ a.5.2.1 (A:) Ubiquitin  90.5    0.23 1.6E-05   26.9   5.1   39    7-45     26-65  (80)
 27 d2crna1 a.5.2.1 (A:8-58) Suppr  90.1    0.14   1E-05   28.3   3.6   38    6-44      3-41  (51)
 28 d1v92a_ a.5.2.3 (A:) NSFL1 (p9  90.1    0.28 2.1E-05   26.2   5.3   45    1-45      1-45  (46)
 29 d1efub2 d.43.1.1 (B:140-282) E  89.4   0.079 5.8E-06   29.9   2.0   36   61-105     2-37  (143)
 30 d1oaia_ a.5.2.3 (A:) FG-bindin  86.1    0.91 6.6E-05   22.9   5.8   38    5-42      7-44  (59)
 31 d2g3qa1 a.5.2.1 (A:1339-1381)   81.0    0.54 3.9E-05   24.3   2.9   33   11-43      7-41  (43)
 32 d1dd3a2 d.45.1.1 (A:58-128) Ri  70.3     1.9 0.00014   20.8   3.3   26    5-30     13-38  (71)
 33 d1ctfa_ d.45.1.1 (A:) Ribosoma  69.9     2.3 0.00017   20.2   3.7   27    5-31     13-39  (68)
 34 d2zjq51 d.45.1.1 (5:52-122) Ri  68.8     1.5 0.00011   21.3   2.6   25    5-30     17-41  (71)
 35 d1wgla_ a.5.2.4 (A:) Toll-inte  44.1       9 0.00066   16.2   4.8   40    4-43      8-48  (59)
 36 d1z96a1 a.5.2.1 (A:295-332) UB  34.8      13 0.00091   15.3   3.9   26   16-41     12-37  (38)
 37 d2qrra1 d.58.18.13 (A:2-98) Me  21.7      13 0.00096   15.1   0.8   12  168-179    62-74  (97)
 38 d2qswa1 d.58.18.13 (A:256-345)  21.4      13 0.00098   15.1   0.8   10  126-135    29-38  (90)

No 1  
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=3.8e-42  Score=298.31  Aligned_cols=138  Identities=30%  Similarity=0.589  Sum_probs=131.7

Q ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             2210000013532346034434443035432---1578999885655667654332045878362777766566677631
Q gi|254780778|r  149 SEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEAL  225 (296)
Q Consensus       149 ~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~---~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~  225 (296)
                      .+|.+++|+|++     ||+||||.+++.++   ..+.+.+++++|||||+|++|.||++++||++++++|+++++++++
T Consensus         2 ~eG~v~~YiH~~-----gkigvlv~l~~~~d~~~~~~~~~~~ak~iAmhiaA~~P~~i~~~~v~~~~i~~E~ei~~~~~~   76 (142)
T d1tfea_           2 REGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAAL   76 (142)
T ss_dssp             CEEEEEEEECTT-----SSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCC-----CCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf             987899998389-----967999999735612320157899999998655403865388567879999999999877754


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf             257867899777401676664233302560002777439999987764207982899889876224
Q gi|254780778|r  226 DSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK  291 (296)
Q Consensus       226 ~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE  291 (296)
                      .+|||++|++||++|||+|||+|+|||+|+||+||++||++||++.++++|.+|+|++|+||+||-
T Consensus        77 ~~gKP~~i~ekIv~Gk~~Kf~~E~~LleQ~fv~D~~~tV~~~l~~~~~~~g~~i~i~~F~R~~vG~  142 (142)
T d1tfea_          77 NEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA  142 (142)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECC
T ss_conf             045378899999999999888876320587405998409999999898608980899999998369


No 2  
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=2.7e-41  Score=292.67  Aligned_cols=123  Identities=39%  Similarity=0.598  Sum_probs=116.7

Q ss_pred             CEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             00000135323460344344430354321578999885655667654332045878362777766566677631257867
Q gi|254780778|r  152 VISSYLHASPSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSG  231 (296)
Q Consensus       152 ~v~~Y~H~~~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~  231 (296)
                      ++++|+|+      |||||||++++.++      +++|+||||||||+|.||++++||++++++|++|+.++++.+|||+
T Consensus         2 vi~sYiH~------gkigvlV~~~~~~~------e~ak~iAMHIAA~~P~~l~~~~vp~~~i~kE~~i~~~q~~~~gKPe   69 (143)
T d1efub2           2 VLGSYQHG------ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPK   69 (143)
T ss_dssp             EEEEEEET------TTEEEEEEEESCCH------HHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             EEEEEECC------CEEEEEEEECCCCH------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             18997649------98999999658609------9999888898536875035443889999877777676653024318


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCC
Q ss_conf             8997774016766642333025600027774399999877642079828998898762241
Q gi|254780778|r  232 NIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKE  292 (296)
Q Consensus       232 ~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~  292 (296)
                      +|++||++|||+|||+|+|||+|+||+||++||++||++.      +++|++|+||+|||-
T Consensus        70 ~i~eKIveGkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~~~------~~~v~~FvRfevGEG  124 (143)
T d1efub2          70 EIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEG  124 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTTSEETTEEEEEHHHHHHTT------TCEEEEEEEEETTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHC------CCEEEEEEEEEECCC
T ss_conf             7898888888998887630014521059860599999867------988988999994696


No 3  
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=99.92  E-value=3.4e-26  Score=192.08  Aligned_cols=102  Identities=26%  Similarity=0.443  Sum_probs=84.6

Q ss_pred             CCCEEEECCCCCCC------CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHH
Q ss_conf             21000001353234------603443444303543215789998856556676543320458783627777665666776
Q gi|254780778|r  150 EGVISSYLHASPSE------GLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTE  223 (296)
Q Consensus       150 ~~~v~~Y~H~~~~~------~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~  223 (296)
                      ++++++|+|+....      .+||||++|.++++.. .....+++|+||||||||+|.|+++.+..+.            
T Consensus         1 G~~igsYiHg~~~~~~~~~~~lGkig~lv~~~~~~~-~~~~~~l~k~iAmhIaA~~P~~i~~~~~~~~------------   67 (109)
T d1xb2b3           1 GFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSEL-KANLADLGRRLGQHVVGMAPLSVGSLDDEPG------------   67 (109)
T ss_dssp             TEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSC-GGGCHHHHHHHHHHHHHHCCSBCCCTTSCCC------------
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC------------
T ss_conf             987999958983345656533350999999725887-6688899899999998339810285444344------------


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC
Q ss_conf             31257867899777401676664233302560002777439999987764207982899889876224
Q gi|254780778|r  224 ALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK  291 (296)
Q Consensus       224 ~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE  291 (296)
                           |+                +|+|||+||||+||++||++||++.      +++|++|+||+|||
T Consensus        68 -----~~----------------~E~~Ll~Q~fvkD~~~tV~~~l~~~------~i~v~~F~Rf~vGE  108 (109)
T d1xb2b3          68 -----GE----------------AETKMLSQPYLLDPSITLGQYVQPH------GVSVVDFVRFECGE  108 (109)
T ss_dssp             -----GG----------------GCCBGGGSBCTTCTTSBHHHHHGGG------TCEEEEEEEEETTC
T ss_pred             -----CC----------------HHHEECCCCCCCCCCCCHHHHHHHC------CCEEEEEEEEEECC
T ss_conf             -----42----------------0111214541218962799999877------99899999998358


No 4  
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=99.90  E-value=7.8e-25  Score=183.03  Aligned_cols=96  Identities=33%  Similarity=0.466  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHEECCCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCC--------------HHHHHHCCC-CC
Q ss_conf             033642200004407885369999840310102267999999888753103356--------------577864004-10
Q gi|254780778|r   54 GRKVSEGLIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGS--------------LDNVLAMPF-DH  118 (296)
Q Consensus        54 ~R~a~eG~v~~~~~~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~~~~~--------------~~~~~~~~~-~~  118 (296)
                      ||+|+||+|+++.++ +.|+|+||||||||||||+.|++|++++++.++.++.+              ...+..++. ..
T Consensus         1 GR~a~EG~I~i~~~~-~~~~ivElNcETDFVArn~~F~~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (111)
T d1xb2b2           1 GRKTKEGLIGLLQEG-DTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELPAGPE   79 (111)
T ss_dssp             TSCCCEEEEEEEEET-TEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSBCCSS
T ss_pred             CCCCCCCEEEEEECC-CEEEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCC
T ss_conf             964666279999689-8699999944551665148899999999999997276508888655553311002666521466


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             00014677899998543431024443102222
Q gi|254780778|r  119 SGITVGDGIKQQIAITGECIKLRRSALLCVSE  150 (296)
Q Consensus       119 ~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~  150 (296)
                      ++.||+|.+.++++++||||+|||+.++++|.
T Consensus        80 ~~~tv~d~i~~~ia~iGEnI~lrR~~~~~~ps  111 (111)
T d1xb2b2          80 REGSLKDQLALAIGKLGENMILKRAAWVKVPA  111 (111)
T ss_dssp             SCSBHHHHHHHHHHHHCSCEEEEEEEEEECCT
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEEEEEECCC
T ss_conf             79829999999864527898998789986389


No 5  
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=99.83  E-value=6.3e-22  Score=163.71  Aligned_cols=84  Identities=30%  Similarity=0.371  Sum_probs=73.6

Q ss_pred             HHHHHHHHHEECCCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             36422000044078853699998403101022679999998887531033565778640041000014677899998543
Q gi|254780778|r   56 KVSEGLIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITG  135 (296)
Q Consensus        56 ~a~eG~v~~~~~~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iG  135 (296)
                      +|+||+|+++.++ +.|+|+||||||||||||++|++|++.+++.++.++.+..+.+       +.|++|.+.+++++||
T Consensus         1 vA~EG~I~~~~~~-~~~~ivEvncETDFVAkne~F~~l~~~i~~~~~~~~~~~~~~~-------~~~v~e~~~~~iakiG   72 (85)
T d1efub4           1 VAADGVIKTKIDG-NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVL-------KAQFEEERVALVAKIG   72 (85)
T ss_dssp             CCCEEEEEEEEET-TEEEEEEEEESCHHHHTCHHHHHHHHHHHHHHHHTTCCCHHHH-------HHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEEEECC-CEEEEEEEECCCCCHHCCHHHHHHHHHHHHHHHHCCCCCHHHH-------HCHHHHHHHHHHHHHC
T ss_conf             9666089999769-8699999954673032246799999999999986596458887-------0637899999988736


Q ss_pred             HHHHHHHHHHCC
Q ss_conf             431024443102
Q gi|254780778|r  136 ECIKLRRSALLC  147 (296)
Q Consensus       136 EnI~l~R~~~~~  147 (296)
                      |||+|||+.+++
T Consensus        73 EnI~irR~~~~e   84 (85)
T d1efub4          73 ENINIRRVAALE   84 (85)
T ss_dssp             SCCEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
T ss_conf             898986789856


No 6  
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.79  E-value=7.7e-20  Score=149.82  Aligned_cols=54  Identities=56%  Similarity=0.885  Sum_probs=52.4

Q ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             735589999999871999899999999629998999999998238899865103
Q gi|254780778|r    2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGR   55 (296)
Q Consensus         2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R   55 (296)
                      |+||+++||+||++||+||||||+||++++||+|+|++|||++|+++|.||+|+
T Consensus         1 a~is~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~Lr~kG~~~A~Kk~Gn   54 (54)
T d1efub3           1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGN   54 (54)
T ss_dssp             CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             947899999999986987999999999838999999999999718899874479


No 7  
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=99.77  E-value=2.1e-19  Score=146.96  Aligned_cols=55  Identities=29%  Similarity=0.358  Sum_probs=53.1

Q ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7355899999998719998999999996299989999999982388998651033
Q gi|254780778|r    2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRK   56 (296)
Q Consensus         2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~   56 (296)
                      |.+|+++||+||++||+||||||+||++++||+|+|++|||++|+++|.||++|.
T Consensus         1 sa~s~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~LrkkG~a~a~kKa~Rl   55 (56)
T d1xb2b1           1 SASSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARL   55 (56)
T ss_dssp             CHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9044999999999869889999999998389999999999998898899886653


No 8  
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.75  E-value=8.9e-19  Score=142.74  Aligned_cols=51  Identities=47%  Similarity=0.668  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             589999999871999899999999629998999999998238899865103
Q gi|254780778|r    5 SAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGR   55 (296)
Q Consensus         5 t~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R   55 (296)
                      ++++||+||++||+||||||+||+|++||+|+|++|||++|+++|+|+++|
T Consensus         2 ~~elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~Lr~~G~~kA~Kk~~R   52 (52)
T d1aipc1           2 QMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADR   52 (52)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             188999999986987999999999839999999999999758988874489


No 9  
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]}
Probab=99.05  E-value=4.1e-11  Score=91.69  Aligned_cols=92  Identities=32%  Similarity=0.387  Sum_probs=70.9

Q ss_pred             HHHHHHHHEEC-CCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHH-CCCCH--------------------------
Q ss_conf             64220000440-788536999984031010226799999988875310-33565--------------------------
Q gi|254780778|r   57 VSEGLIGIARD-GYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALS-TDGSL--------------------------  108 (296)
Q Consensus        57 a~eG~v~~~~~-~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~-~~~~~--------------------------  108 (296)
                      |.||+|+.|.. +.+.|+|++++|+||||++|+.|..|+++++..+.. +|..+                          
T Consensus         1 a~eG~v~~YiH~~gkigvlv~l~~~~d~~~~~~~~~~~ak~iAmhiaA~~P~~i~~~~v~~~~i~~E~ei~~~~~~~~gK   80 (142)
T d1tfea_           1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGK   80 (142)
T ss_dssp             CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCCEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             99878999983899679999997356123201578999999986554038653885678799999999998777540453


Q ss_pred             -------------------HHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             -------------------77864004-10000146778999985434310244431022
Q gi|254780778|r  109 -------------------DNVLAMPF-DHSGITVGDGIKQQIAITGECIKLRRSALLCV  148 (296)
Q Consensus       109 -------------------~~~~~~~~-~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~  148 (296)
                                         ..++.+++ .++..||++++.+..+.+|+||.|.||.+|..
T Consensus        81 P~~i~ekIv~Gk~~Kf~~E~~LleQ~fv~D~~~tV~~~l~~~~~~~g~~i~i~~F~R~~v  140 (142)
T d1tfea_          81 PQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFEL  140 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf             788999999999998888763205874059984099999998986089808999999983


No 10 
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=98.34  E-value=2.4e-07  Score=66.61  Aligned_cols=103  Identities=15%  Similarity=0.160  Sum_probs=78.9

Q ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf             222100000135323460344344430354321---57899988565566765433204587836277776656667763
Q gi|254780778|r  148 VSEGVISSYLHASPSEGLGSIGVLVALQSSAED---KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEA  224 (296)
Q Consensus       148 ~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~---~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~  224 (296)
                      +.+|.++.|..       |+.|+||++.+.++-   .+.++.|+++||||+++..|.........               
T Consensus         4 a~EG~I~i~~~-------~~~~~ivElNcETDFVArn~~F~~la~~ia~~~~~~~~~~~~~~~~~---------------   61 (111)
T d1xb2b2           4 TKEGLIGLLQE-------GDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTY---------------   61 (111)
T ss_dssp             CCEEEEEEEEE-------TTEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSC---------------
T ss_pred             CCCCEEEEEEC-------CCEEEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH---------------
T ss_conf             66627999968-------98699999944551665148899999999999997276508888655---------------


Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEE
Q ss_conf             12578678997774016766642333025600027774399999877642079828998898762
Q gi|254780778|r  225 LDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVV  289 (296)
Q Consensus       225 ~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~l  289 (296)
                                       ...++....|.+|++..++..||++++.+.-..+|.+|.|.+|.||++
T Consensus        62 -----------------~~~~~~~~~l~~~~~~~~~~~tv~d~i~~~ia~iGEnI~lrR~~~~~~  109 (111)
T d1xb2b2          62 -----------------SKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKV  109 (111)
T ss_dssp             -----------------EEEEECHHHHHTSBCCSSSCSBHHHHHHHHHHHHCSCEEEEEEEEEEC
T ss_pred             -----------------HHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEC
T ss_conf             -----------------553311002666521466798299999998645278989987899863


No 11 
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=96.61  E-value=0.0011  Score=42.33  Aligned_cols=80  Identities=15%  Similarity=0.261  Sum_probs=62.1

Q ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf             222100000135323460344344430354321---57899988565566765433204587836277776656667763
Q gi|254780778|r  148 VSEGVISSYLHASPSEGLGSIGVLVALQSSAED---KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEA  224 (296)
Q Consensus       148 ~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~---~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~  224 (296)
                      +.+|.++.|+++       +.|+||++.+.++-   .+.+++|+++|+.|+.+.+|..+..                   
T Consensus         2 A~EG~I~~~~~~-------~~~~ivEvncETDFVAkne~F~~l~~~i~~~~~~~~~~~~~~-------------------   55 (85)
T d1efub4           2 AADGVIKTKIDG-------NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEV-------------------   55 (85)
T ss_dssp             CCEEEEEEEEET-------TEEEEEEEEESCHHHHTCHHHHHHHHHHHHHHHHTTCCCHHH-------------------
T ss_pred             CCCEEEEEEECC-------CEEEEEEEECCCCCHHCCHHHHHHHHHHHHHHHHCCCCCHHH-------------------
T ss_conf             666089999769-------869999995467303224679999999999998659645888-------------------


Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf             1257867899777401676664233302560002777439999987764207982899889876
Q gi|254780778|r  225 LDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFV  288 (296)
Q Consensus       225 ~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~  288 (296)
                                                 +        ..||.+++.+.-.++|.+|.|.+|.+++
T Consensus        56 ---------------------------~--------~~~v~e~~~~~iakiGEnI~irR~~~~e   84 (85)
T d1efub4          56 ---------------------------L--------KAQFEEERVALVAKIGENINIRRVAALE   84 (85)
T ss_dssp             ---------------------------H--------HHHHHHHHHHHHHHHCSCCEEEEEEEEE
T ss_pred             ---------------------------H--------HCHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf             ---------------------------7--------0637899999988736898986789856


No 12 
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.84  E-value=0.0076  Score=36.69  Aligned_cols=41  Identities=24%  Similarity=0.338  Sum_probs=34.6

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             355899999998719998999999996299989999999982
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      .+....|.+|=++ |-+-..|++||..++||++.|++||-..
T Consensus         7 ~~d~~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~~wL~~~   47 (63)
T d1wjia_           7 GVDEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTS   47 (63)
T ss_dssp             SSCHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             5699999999996-9999999999999198999999999978


No 13 
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=95.66  E-value=0.0097  Score=35.97  Aligned_cols=39  Identities=26%  Similarity=0.317  Sum_probs=33.0

Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             5589999999871999899999999629998999999998
Q gi|254780778|r    4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      ++-+.|.+|.++ |..--.|++||..|+||+|.|++||-.
T Consensus        28 ~~ee~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Ll~   66 (73)
T d1vg5a_          28 ASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMS   66 (73)
T ss_dssp             CCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHH-CCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             689999999995-899999999999918999999999982


No 14 
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.27  E-value=0.011  Score=35.64  Aligned_cols=38  Identities=16%  Similarity=0.100  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             899999998719998999999996299989999999982
Q gi|254780778|r    6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      .+.|.+|-++ |-+-..|++||..|+||+|.|++||-..
T Consensus        20 e~~v~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Lls~   57 (63)
T d1wgna_          20 RQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFAH   57 (63)
T ss_dssp             HHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             9999999986-9989999999999099999999999928


No 15 
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}
Probab=94.95  E-value=0.021  Score=33.68  Aligned_cols=39  Identities=33%  Similarity=0.426  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999999987199989999999962999899999999823
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG   45 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG   45 (296)
                      ..||+|.+.||.+--+|-=||-.|++|+..||.+|-+-+
T Consensus        34 ~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lLEg~   72 (91)
T d1wj7a1          34 EKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN   72 (91)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf             999999999678899999998517853999999999557


No 16 
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=94.89  E-value=0.029  Score=32.79  Aligned_cols=41  Identities=24%  Similarity=0.229  Sum_probs=34.1

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             355899999998719998999999996299989999999982
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      .+..+.|.+|=+ -|-+--.|++||..++||++.|++||-..
T Consensus        27 ~~d~~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~Av~~Lls~   67 (73)
T d1wiva_          27 DIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNN   67 (73)
T ss_dssp             SSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHH-CCCCHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf             989999999993-69999999999999299999999999818


No 17 
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.05  E-value=0.025  Score=33.22  Aligned_cols=37  Identities=24%  Similarity=0.202  Sum_probs=30.6

Q ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHH
Q ss_conf             5899999998719998999999996299-9899999999
Q gi|254780778|r    5 SAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILR   42 (296)
Q Consensus         5 t~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LR   42 (296)
                      +...|.+|=+ =|-+--.|++||..++| |+|.|++||=
T Consensus        12 ~~~~l~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~~WLl   49 (51)
T d2cpwa1          12 HGSALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLF   49 (51)
T ss_dssp             CCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             CHHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999999999-5999999999999977999999999997


No 18 
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=94.01  E-value=0.015  Score=34.73  Aligned_cols=73  Identities=15%  Similarity=0.218  Sum_probs=49.3

Q ss_pred             CCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHHCC-CCH------------HHHHHCCC-CCCCHHHHHHHHHHHHHH
Q ss_conf             8853699998403101022679999998887531033-565------------77864004-100001467789999854
Q gi|254780778|r   69 YKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTD-GSL------------DNVLAMPF-DHSGITVGDGIKQQIAIT  134 (296)
Q Consensus        69 ~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~~~-~~~------------~~~~~~~~-~~~~~tv~d~i~~~ia~i  134 (296)
                      .+.++|+.++|.    .++..|..|+++|+..+...+ ..+            ..++.++| .+..+||++.+.+     
T Consensus        23 Gkig~lv~~~~~----~~~~~~~~l~k~iAmhIaA~~P~~i~~~~~~~~~~~E~~Ll~Q~fvkD~~~tV~~~l~~-----   93 (109)
T d1xb2b3          23 GKYGALVICETS----ELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSITLGQYVQP-----   93 (109)
T ss_dssp             ESEEEEEEEECC----SCGGGCHHHHHHHHHHHHHHCCSBCCCTTSCCCGGGCCBGGGSBCTTCTTSBHHHHHGG-----
T ss_pred             CCEEEEEEECCC----CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCHHHHHHH-----
T ss_conf             509999997258----87668889989999999833981028544434442011121454121896279999987-----


Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             34310244431022221
Q gi|254780778|r  135 GECIKLRRSALLCVSEG  151 (296)
Q Consensus       135 GEnI~l~R~~~~~~~~~  151 (296)
                       +|+.+.||.+|+..+|
T Consensus        94 -~~i~v~~F~Rf~vGEG  109 (109)
T d1xb2b3          94 -HGVSVVDFVRFECGEG  109 (109)
T ss_dssp             -GTCEEEEEEEEETTCC
T ss_pred             -CCCEEEEEEEEEECCC
T ss_conf             -7998999999983589


No 19 
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.82  E-value=0.069  Score=30.30  Aligned_cols=37  Identities=27%  Similarity=0.325  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9999999871999899999999629998999999998
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      ..+-+||++-=.----|-.||..++||+++||+.|..
T Consensus         4 ~QL~~L~~MGF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~   40 (41)
T d2daha1           4 VQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ   40 (41)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999859997899999999839989999999975


No 20 
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=93.55  E-value=0.036  Score=32.15  Aligned_cols=41  Identities=22%  Similarity=0.135  Sum_probs=32.8

Q ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf             355899999998719998999999996299-989999999982
Q gi|254780778|r    3 KVSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK   44 (296)
Q Consensus         3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk   44 (296)
                      .+..++|.+|=+ -|-+--.|++||..++| |+|.|++||-..
T Consensus         7 ~~d~~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h   48 (64)
T d1whca_           7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEH   48 (64)
T ss_dssp             CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             559999999999-599999999999994899999999999987


No 21 
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=93.43  E-value=0.081  Score=29.84  Aligned_cols=37  Identities=27%  Similarity=0.263  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             8999999987199989999999962999899999999
Q gi|254780778|r    6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR   42 (296)
Q Consensus         6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR   42 (296)
                      ...+-+||++-=.----|-+||..++||++.||++|-
T Consensus        23 ~~QL~qL~eMGF~d~~~Nl~AL~~t~Gdv~~Aie~Ll   59 (61)
T d1veja1          23 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLL   59 (61)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999999993899789999999991898999999986


No 22 
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=93.36  E-value=0.095  Score=29.39  Aligned_cols=38  Identities=21%  Similarity=0.205  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             99999998719998999999996299989999999982
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK   44 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk   44 (296)
                      ..+-+||++-=.---.|-+||..++||++.||+.|...
T Consensus        10 ~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~   47 (50)
T d2dnaa1          10 KEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS   47 (50)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             99999999499979999999999399899999999865


No 23 
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=92.91  E-value=0.091  Score=29.50  Aligned_cols=35  Identities=20%  Similarity=0.121  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999998719998999999996299989999999
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL   41 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L   41 (296)
                      ..+.+||++-=.---.|-+||..++||+..||+.|
T Consensus         7 ~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~L   41 (44)
T d2bwba1           7 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSL   41 (44)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99999999499968999999999499899999998


No 24 
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.83  E-value=0.029  Score=32.77  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999998719998999999996299989999999
Q gi|254780778|r    7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL   41 (296)
Q Consensus         7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L   41 (296)
                      +.|.+|-+ -|-+--.|++||..++||+|.|++||
T Consensus         6 ~~i~~L~~-MGF~~~~a~~AL~~~~~N~e~A~~~L   39 (41)
T d1oqya1           6 TMLTEIMS-MGYERERVVAALRASYNNPHRAVEYL   39 (41)
T ss_dssp             HHHHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred             HHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             99999998-59989999999998589999999987


No 25 
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=91.39  E-value=0.22  Score=27.01  Aligned_cols=40  Identities=20%  Similarity=0.333  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHCC-CCHHHHHHHHHHH
Q ss_conf             5589999999871999899999999629-9989999999982
Q gi|254780778|r    4 VSAVAVKELRGKTGAGIMDCKNALLEAK-GDSELAIDILRTK   44 (296)
Q Consensus         4 it~~~iK~LR~~Tgag~~dCKkAL~e~~-gD~e~Ai~~LRkk   44 (296)
                      +....|.+|-+ -|-+--.|++||..++ +|++.|++||-..
T Consensus        28 ~d~~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h   68 (84)
T d1veka_          28 ANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSH   68 (84)
T ss_dssp             CCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             99999999999-599999999999997699999999999986


No 26 
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=90.49  E-value=0.23  Score=26.86  Aligned_cols=39  Identities=31%  Similarity=0.420  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHCCC-HHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             9999999871999-89999999962999899999999823
Q gi|254780778|r    7 VAVKELRGKTGAG-IMDCKNALLEAKGDSELAIDILRTKG   45 (296)
Q Consensus         7 ~~iK~LR~~Tgag-~~dCKkAL~e~~gD~e~Ai~~LRkkG   45 (296)
                      .++.+||+.||-- ..---.||..++||+..|+-+|-.+-
T Consensus        26 ~lLNQLrEITGIqD~q~L~~ALkas~Gdl~~AV~~LT~~~   65 (80)
T d1vdla_          26 TFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN   65 (80)
T ss_dssp             HHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf             9999999973778599999999803788999999986278


No 27 
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.07  E-value=0.14  Score=28.32  Aligned_cols=38  Identities=18%  Similarity=0.176  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCC-CCHHHHHHHHHHH
Q ss_conf             89999999871999899999999629-9989999999982
Q gi|254780778|r    6 AVAVKELRGKTGAGIMDCKNALLEAK-GDSELAIDILRTK   44 (296)
Q Consensus         6 ~~~iK~LR~~Tgag~~dCKkAL~e~~-gD~e~Ai~~LRkk   44 (296)
                      +..|.+|=+ =|-+--.|++||..++ ++++.|++||-..
T Consensus         3 p~~v~~L~~-MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h   41 (51)
T d2crna1           3 PSLLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHDH   41 (51)
T ss_dssp             CSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             999999999-699999999999997799999999999986


No 28 
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=90.05  E-value=0.28  Score=26.21  Aligned_cols=45  Identities=24%  Similarity=0.219  Sum_probs=38.3

Q ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             973558999999987199989999999962999899999999823
Q gi|254780778|r    1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG   45 (296)
Q Consensus         1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG   45 (296)
                      ||.---.+|.+....||+.--.++.-|+.++||++.|+..--..|
T Consensus         1 ma~~~~~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~yfe~g   45 (46)
T d1v92a_           1 MAEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG   45 (46)
T ss_dssp             CTTHHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf             976399999999999895999999999995996999999998658


No 29 
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=89.41  E-value=0.079  Score=29.89  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=25.3

Q ss_pred             HHHHEECCCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHHCC
Q ss_conf             000044078853699998403101022679999998887531033
Q gi|254780778|r   61 LIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTD  105 (296)
Q Consensus        61 ~v~~~~~~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~~~  105 (296)
                      +|+.|..|++.|+|+.++|++         .+|+++++..+...+
T Consensus         2 vi~sYiH~gkigvlV~~~~~~---------~e~ak~iAMHIAA~~   37 (143)
T d1efub2           2 VLGSYQHGARIGVLVAAKGAD---------EELVKHIAMHVAASK   37 (143)
T ss_dssp             EEEEEEETTTEEEEEEEESCC---------HHHHHHHHHHHHHHC
T ss_pred             EEEEEECCCEEEEEEEECCCC---------HHHHHHHHHHHHCCC
T ss_conf             189976499899999965860---------999998888985368


No 30 
>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.12  E-value=0.91  Score=22.86  Aligned_cols=38  Identities=8%  Similarity=0.121  Sum_probs=34.7

Q ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             58999999987199989999999962999899999999
Q gi|254780778|r    5 SAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR   42 (296)
Q Consensus         5 t~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR   42 (296)
                      --++|.++-..||--.-=|.+.|+++++|+++|+....
T Consensus         7 Qq~mv~~~s~~T~mn~e~s~~cLe~~~Wd~~~A~~~F~   44 (59)
T d1oaia_           7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT   44 (59)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999999999798899999999985989999999999


No 31 
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=81.04  E-value=0.54  Score=24.34  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=26.4

Q ss_pred             HHHHHHCCCH--HHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9998719998--99999999629998999999998
Q gi|254780778|r   11 ELRGKTGAGI--MDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus        11 ~LR~~Tgag~--~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      .+++.+|-|+  -..++||+.++||++.|..+|-.
T Consensus         7 ai~eL~~MGF~e~~A~~AL~k~~wnleaAtN~LLd   41 (43)
T d2g3qa1           7 AVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999955878899999999858979999999870


No 32 
>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=70.27  E-value=1.9  Score=20.78  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=22.3

Q ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf             58999999987199989999999962
Q gi|254780778|r    5 SAVAVKELRGKTGAGIMDCKNALLEA   30 (296)
Q Consensus         5 t~~~iK~LR~~Tgag~~dCKkAL~e~   30 (296)
                      ..+.||.+|+.||-|+++.|+..+.+
T Consensus        13 KI~vIK~VR~it~lgLkEAK~lVe~~   38 (71)
T d1dd3a2          13 KIQVIKVVREITGLGLKEAKDLVEKA   38 (71)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             23577899872698789999999816


No 33 
>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=69.92  E-value=2.3  Score=20.17  Aligned_cols=27  Identities=30%  Similarity=0.540  Sum_probs=23.4

Q ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             589999999871999899999999629
Q gi|254780778|r    5 SAVAVKELRGKTGAGIMDCKNALLEAK   31 (296)
Q Consensus         5 t~~~iK~LR~~Tgag~~dCKkAL~e~~   31 (296)
                      ..+.||.+|..||.|+++.|+..+.+.
T Consensus        13 Ki~vIK~VR~it~lgLkEAK~lVe~~P   39 (68)
T d1ctfa_          13 KVAVIKAVRGATGLGLKEAKDLVESAP   39 (68)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf             468999999845987999999987288


No 34 
>d2zjq51 d.45.1.1 (5:52-122) Ribosomal protein L7/12, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=68.79  E-value=1.5  Score=21.33  Aligned_cols=25  Identities=36%  Similarity=0.634  Sum_probs=21.1

Q ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHC
Q ss_conf             58999999987199989999999962
Q gi|254780778|r    5 SAVAVKELRGKTGAGIMDCKNALLEA   30 (296)
Q Consensus         5 t~~~iK~LR~~Tgag~~dCKkAL~e~   30 (296)
                      ..+.||.+|..||.|+++.|+ |.++
T Consensus        17 Ki~vIK~VR~it~LgLkeAK~-lVe~   41 (71)
T d2zjq51          17 KINVIKEIRGITGLGLKEAKD-MSEK   41 (71)
T ss_pred             HHHHHHHHHHHCCCCHHHHHH-HCCC
T ss_conf             036899998865998899986-2138


No 35 
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.13  E-value=9  Score=16.21  Aligned_cols=40  Identities=18%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             CCHHHHHHHHHHH-CCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             5589999999871-999899999999629998999999998
Q gi|254780778|r    4 VSAVAVKELRGKT-GAGIMDCKNALLEAKGDSELAIDILRT   43 (296)
Q Consensus         4 it~~~iK~LR~~T-gag~~dCKkAL~e~~gD~e~Ai~~LRk   43 (296)
                      -+-+.++.|+++= +.----.+-.|.+++|++|.||+-|-.
T Consensus         8 ~~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~   48 (59)
T d1wgla_           8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ   48 (59)
T ss_dssp             SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             76999999999878877999999999939977999999985


No 36 
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=34.76  E-value=13  Score=15.26  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=21.7

Q ss_pred             HCCCHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             19998999999996299989999999
Q gi|254780778|r   16 TGAGIMDCKNALLEAKGDSELAIDIL   41 (296)
Q Consensus        16 Tgag~~dCKkAL~e~~gD~e~Ai~~L   41 (296)
                      -|-.-.+.-+||..+|||++-|--+|
T Consensus        12 mgfdpleaaqaldaangdldvaasfl   37 (38)
T d1z96a1          12 MGFDPLEAAQALDAANGDLDVAASFL   37 (38)
T ss_dssp             TTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             27887899988754057578889862


No 37 
>d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]}
Probab=21.67  E-value=13  Score=15.10  Aligned_cols=12  Identities=17%  Similarity=0.432  Sum_probs=5.2

Q ss_pred             HHH-HHHHCCCCC
Q ss_conf             434-443035432
Q gi|254780778|r  168 IGV-LVALQSSAE  179 (296)
Q Consensus       168 igv-lV~l~~~~~  179 (296)
                      +|. ++.+.++.+
T Consensus        62 ~G~Lil~l~G~~~   74 (97)
T d2qrra1          62 FGMMVAELFGNEQ   74 (97)
T ss_dssp             EEEEEEEEESCHH
T ss_pred             EEEEEEEEECCHH
T ss_conf             8999999978999


No 38 
>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}
Probab=21.44  E-value=13  Score=15.05  Aligned_cols=10  Identities=10%  Similarity=-0.124  Sum_probs=3.9

Q ss_pred             HHHHHHHHHH
Q ss_conf             7899998543
Q gi|254780778|r  126 GIKQQIAITG  135 (296)
Q Consensus       126 ~i~~~ia~iG  135 (296)
                      .+.+++...|
T Consensus        29 vis~l~r~~~   38 (90)
T d2qswa1          29 IISHIVQEYQ   38 (90)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
T ss_conf             9999999859


Done!