Query gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62] Match_columns 296 No_of_seqs 132 out of 2145 Neff 6.2 Searched_HMMs 13730 Date Wed Jun 1 08:04:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780778.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1tfea_ d.43.1.1 (A:) Elongati 100.0 3.8E-42 0 298.3 9.4 138 149-291 2-142 (142) 2 d1efub2 d.43.1.1 (B:140-282) E 100.0 2.7E-41 1.4E-45 292.7 8.3 123 152-292 2-124 (143) 3 d1xb2b3 d.43.1.1 (B:223-331) E 99.9 3.4E-26 2.5E-30 192.1 4.5 102 150-291 1-108 (109) 4 d1xb2b2 d.43.1.1 (B:112-222) E 99.9 7.8E-25 5.7E-29 183.0 4.5 96 54-150 1-111 (111) 5 d1efub4 d.43.1.1 (B:55-139) El 99.8 6.3E-22 4.6E-26 163.7 4.3 84 56-147 1-84 (85) 6 d1efub3 a.5.2.2 (B:1-54) Elong 99.8 7.7E-20 5.6E-24 149.8 7.5 54 2-55 1-54 (54) 7 d1xb2b1 a.5.2.2 (B:56-111) Elo 99.8 2.1E-19 1.5E-23 147.0 6.8 55 2-56 1-55 (56) 8 d1aipc1 a.5.2.2 (C:2-53) Elong 99.7 8.9E-19 6.5E-23 142.7 6.9 51 5-55 2-52 (52) 9 d1tfea_ d.43.1.1 (A:) Elongati 99.0 4.1E-11 3E-15 91.7 3.5 92 57-148 1-140 (142) 10 d1xb2b2 d.43.1.1 (B:112-222) E 98.3 2.4E-07 1.8E-11 66.6 4.8 103 148-289 4-109 (111) 11 d1efub4 d.43.1.1 (B:55-139) El 96.6 0.0011 7.8E-08 42.3 4.3 80 148-288 2-84 (85) 12 d1wjia_ a.5.2.1 (A:) Tudor dom 95.8 0.0076 5.5E-07 36.7 5.4 41 3-44 7-47 (63) 13 d1vg5a_ a.5.2.1 (A:) Rhomboid 95.7 0.0097 7.1E-07 36.0 5.3 39 4-43 28-66 (73) 14 d1wgna_ a.5.2.1 (A:) Ubiquitin 95.3 0.011 7.9E-07 35.6 4.5 38 6-44 20-57 (63) 15 d1wj7a1 a.5.2.1 (A:8-98) Ubiqu 95.0 0.021 1.6E-06 33.7 5.3 39 7-45 34-72 (91) 16 d1wiva_ a.5.2.1 (A:) Ubiquitin 94.9 0.029 2.1E-06 32.8 5.8 41 3-44 27-67 (73) 17 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 94.0 0.025 1.8E-06 33.2 3.9 37 5-42 12-49 (51) 18 d1xb2b3 d.43.1.1 (B:223-331) E 94.0 0.015 1.1E-06 34.7 2.7 73 69-151 23-109 (109) 19 d2daha1 a.5.2.1 (A:8-48) Ubiqu 93.8 0.069 5E-06 30.3 5.8 37 7-43 4-40 (41) 20 d1whca_ a.5.2.1 (A:) UBA/UBX 3 93.6 0.036 2.7E-06 32.1 4.0 41 3-44 7-48 (64) 21 d1veja1 a.5.2.1 (A:8-68) 49314 93.4 0.081 5.9E-06 29.8 5.6 37 6-42 23-59 (61) 22 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 93.4 0.095 6.9E-06 29.4 5.9 38 7-44 10-47 (50) 23 d2bwba1 a.5.2.1 (A:328-371) DS 92.9 0.091 6.6E-06 29.5 5.2 35 7-41 7-41 (44) 24 d1oqya1 a.5.2.1 (A:160-200) DN 92.8 0.029 2.1E-06 32.8 2.6 34 7-41 6-39 (41) 25 d1veka_ a.5.2.1 (A:) Ubiquitin 91.4 0.22 1.6E-05 27.0 5.6 40 4-44 28-68 (84) 26 d1vdla_ a.5.2.1 (A:) Ubiquitin 90.5 0.23 1.6E-05 26.9 5.1 39 7-45 26-65 (80) 27 d2crna1 a.5.2.1 (A:8-58) Suppr 90.1 0.14 1E-05 28.3 3.6 38 6-44 3-41 (51) 28 d1v92a_ a.5.2.3 (A:) NSFL1 (p9 90.1 0.28 2.1E-05 26.2 5.3 45 1-45 1-45 (46) 29 d1efub2 d.43.1.1 (B:140-282) E 89.4 0.079 5.8E-06 29.9 2.0 36 61-105 2-37 (143) 30 d1oaia_ a.5.2.3 (A:) FG-bindin 86.1 0.91 6.6E-05 22.9 5.8 38 5-42 7-44 (59) 31 d2g3qa1 a.5.2.1 (A:1339-1381) 81.0 0.54 3.9E-05 24.3 2.9 33 11-43 7-41 (43) 32 d1dd3a2 d.45.1.1 (A:58-128) Ri 70.3 1.9 0.00014 20.8 3.3 26 5-30 13-38 (71) 33 d1ctfa_ d.45.1.1 (A:) Ribosoma 69.9 2.3 0.00017 20.2 3.7 27 5-31 13-39 (68) 34 d2zjq51 d.45.1.1 (5:52-122) Ri 68.8 1.5 0.00011 21.3 2.6 25 5-30 17-41 (71) 35 d1wgla_ a.5.2.4 (A:) Toll-inte 44.1 9 0.00066 16.2 4.8 40 4-43 8-48 (59) 36 d1z96a1 a.5.2.1 (A:295-332) UB 34.8 13 0.00091 15.3 3.9 26 16-41 12-37 (38) 37 d2qrra1 d.58.18.13 (A:2-98) Me 21.7 13 0.00096 15.1 0.8 12 168-179 62-74 (97) 38 d2qswa1 d.58.18.13 (A:256-345) 21.4 13 0.00098 15.1 0.8 10 126-135 29-38 (90) No 1 >d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=3.8e-42 Score=298.31 Aligned_cols=138 Identities=30% Similarity=0.589 Sum_probs=131.7 Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHH Q ss_conf 2210000013532346034434443035432---1578999885655667654332045878362777766566677631 Q gi|254780778|r 149 SEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEAL 225 (296) Q Consensus 149 ~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~---~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~ 225 (296) .+|.+++|+|++ ||+||||.+++.++ ..+.+.+++++|||||+|++|.||++++||++++++|+++++++++ T Consensus 2 ~eG~v~~YiH~~-----gkigvlv~l~~~~d~~~~~~~~~~~ak~iAmhiaA~~P~~i~~~~v~~~~i~~E~ei~~~~~~ 76 (142) T d1tfea_ 2 REGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAAL 76 (142) T ss_dssp CEEEEEEEECTT-----SSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHH T ss_pred CCCEEEEEECCC-----CCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHH T ss_conf 987899998389-----967999999735612320157899999998655403865388567879999999999877754 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC Q ss_conf 257867899777401676664233302560002777439999987764207982899889876224 Q gi|254780778|r 226 DSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296) Q Consensus 226 ~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296) .+|||++|++||++|||+|||+|+|||+|+||+||++||++||++.++++|.+|+|++|+||+||- T Consensus 77 ~~gKP~~i~ekIv~Gk~~Kf~~E~~LleQ~fv~D~~~tV~~~l~~~~~~~g~~i~i~~F~R~~vG~ 142 (142) T d1tfea_ 77 NEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGA 142 (142) T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECC T ss_conf 045378899999999999888876320587405998409999999898608980899999998369 No 2 >d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=2.7e-41 Score=292.67 Aligned_cols=123 Identities=39% Similarity=0.598 Sum_probs=116.7 Q ss_pred CEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCCCCHH Q ss_conf 00000135323460344344430354321578999885655667654332045878362777766566677631257867 Q gi|254780778|r 152 VISSYLHASPSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSG 231 (296) Q Consensus 152 ~v~~Y~H~~~~~~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~~~~gKp~ 231 (296) ++++|+|+ |||||||++++.++ +++|+||||||||+|.||++++||++++++|++|+.++++.+|||+ T Consensus 2 vi~sYiH~------gkigvlV~~~~~~~------e~ak~iAMHIAA~~P~~l~~~~vp~~~i~kE~~i~~~q~~~~gKPe 69 (143) T d1efub2 2 VLGSYQHG------ARIGVLVAAKGADE------ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPK 69 (143) T ss_dssp EEEEEEET------TTEEEEEEEESCCH------HHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTCCH T ss_pred EEEEEECC------CEEEEEEEECCCCH------HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH T ss_conf 18997649------98999999658609------9999888898536875035443889999877777676653024318 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCC Q ss_conf 8997774016766642333025600027774399999877642079828998898762241 Q gi|254780778|r 232 NIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKE 292 (296) Q Consensus 232 ~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE~ 292 (296) +|++||++|||+|||+|+|||+|+||+||++||++||++. +++|++|+||+|||- T Consensus 70 ~i~eKIveGkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~~~------~~~v~~FvRfevGEG 124 (143) T d1efub2 70 EIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEG 124 (143) T ss_dssp HHHHHHHHHHHHHHHHHHBTTTSEETTEEEEEHHHHHHTT------TCEEEEEEEEETTTT T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHC------CCEEEEEEEEEECCC T ss_conf 7898888888998887630014521059860599999867------988988999994696 No 3 >d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Probab=99.92 E-value=3.4e-26 Score=192.08 Aligned_cols=102 Identities=26% Similarity=0.443 Sum_probs=84.6 Q ss_pred CCCEEEECCCCCCC------CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHH Q ss_conf 21000001353234------603443444303543215789998856556676543320458783627777665666776 Q gi|254780778|r 150 EGVISSYLHASPSE------GLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTE 223 (296) Q Consensus 150 ~~~v~~Y~H~~~~~------~~GkigvlV~l~~~~~~~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~ 223 (296) ++++++|+|+.... .+||||++|.++++.. .....+++|+||||||||+|.|+++.+..+. T Consensus 1 G~~igsYiHg~~~~~~~~~~~lGkig~lv~~~~~~~-~~~~~~l~k~iAmhIaA~~P~~i~~~~~~~~------------ 67 (109) T d1xb2b3 1 GFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSEL-KANLADLGRRLGQHVVGMAPLSVGSLDDEPG------------ 67 (109) T ss_dssp TEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSC-GGGCHHHHHHHHHHHHHHCCSBCCCTTSCCC------------ T ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC------------ T ss_conf 987999958983345656533350999999725887-6688899899999998339810285444344------------ Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECC Q ss_conf 31257867899777401676664233302560002777439999987764207982899889876224 Q gi|254780778|r 224 ALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGK 291 (296) Q Consensus 224 ~~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~lGE 291 (296) |+ +|+|||+||||+||++||++||++. +++|++|+||+||| T Consensus 68 -----~~----------------~E~~Ll~Q~fvkD~~~tV~~~l~~~------~i~v~~F~Rf~vGE 108 (109) T d1xb2b3 68 -----GE----------------AETKMLSQPYLLDPSITLGQYVQPH------GVSVVDFVRFECGE 108 (109) T ss_dssp -----GG----------------GCCBGGGSBCTTCTTSBHHHHHGGG------TCEEEEEEEEETTC T ss_pred -----CC----------------HHHEECCCCCCCCCCCCHHHHHHHC------CCEEEEEEEEEECC T ss_conf -----42----------------0111214541218962799999877------99899999998358 No 4 >d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Probab=99.90 E-value=7.8e-25 Score=183.03 Aligned_cols=96 Identities=33% Similarity=0.466 Sum_probs=80.7 Q ss_pred HHHHHHHHHHHEECCCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCC--------------HHHHHHCCC-CC Q ss_conf 033642200004407885369999840310102267999999888753103356--------------577864004-10 Q gi|254780778|r 54 GRKVSEGLIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGS--------------LDNVLAMPF-DH 118 (296) Q Consensus 54 ~R~a~eG~v~~~~~~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~~~~~--------------~~~~~~~~~-~~ 118 (296) ||+|+||+|+++.++ +.|+|+||||||||||||+.|++|++++++.++.++.+ ...+..++. .. T Consensus 1 GR~a~EG~I~i~~~~-~~~~ivElNcETDFVArn~~F~~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (111) T d1xb2b2 1 GRKTKEGLIGLLQEG-DTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELPAGPE 79 (111) T ss_dssp TSCCCEEEEEEEEET-TEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSBCCSS T ss_pred CCCCCCCEEEEEECC-CEEEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCC T ss_conf 964666279999689-8699999944551665148899999999999997276508888655553311002666521466 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 00014677899998543431024443102222 Q gi|254780778|r 119 SGITVGDGIKQQIAITGECIKLRRSALLCVSE 150 (296) Q Consensus 119 ~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~~~ 150 (296) ++.||+|.+.++++++||||+|||+.++++|. T Consensus 80 ~~~tv~d~i~~~ia~iGEnI~lrR~~~~~~ps 111 (111) T d1xb2b2 80 REGSLKDQLALAIGKLGENMILKRAAWVKVPA 111 (111) T ss_dssp SCSBHHHHHHHHHHHHCSCEEEEEEEEEECCT T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEEEEECCC T ss_conf 79829999999864527898998789986389 No 5 >d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Probab=99.83 E-value=6.3e-22 Score=163.71 Aligned_cols=84 Identities=30% Similarity=0.371 Sum_probs=73.6 Q ss_pred HHHHHHHHHEECCCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 36422000044078853699998403101022679999998887531033565778640041000014677899998543 Q gi|254780778|r 56 KVSEGLIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAITG 135 (296) Q Consensus 56 ~a~eG~v~~~~~~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~~~~~~~~~~~~~~~~~~~tv~d~i~~~ia~iG 135 (296) +|+||+|+++.++ +.|+|+||||||||||||++|++|++.+++.++.++.+..+.+ +.|++|.+.+++++|| T Consensus 1 vA~EG~I~~~~~~-~~~~ivEvncETDFVAkne~F~~l~~~i~~~~~~~~~~~~~~~-------~~~v~e~~~~~iakiG 72 (85) T d1efub4 1 VAADGVIKTKIDG-NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVL-------KAQFEEERVALVAKIG 72 (85) T ss_dssp CCCEEEEEEEEET-TEEEEEEEEESCHHHHTCHHHHHHHHHHHHHHHHTTCCCHHHH-------HHHHHHHHHHHHHHHC T ss_pred CCCCEEEEEEECC-CEEEEEEEECCCCCHHCCHHHHHHHHHHHHHHHHCCCCCHHHH-------HCHHHHHHHHHHHHHC T ss_conf 9666089999769-8699999954673032246799999999999986596458887-------0637899999988736 Q ss_pred HHHHHHHHHHCC Q ss_conf 431024443102 Q gi|254780778|r 136 ECIKLRRSALLC 147 (296) Q Consensus 136 EnI~l~R~~~~~ 147 (296) |||+|||+.+++ T Consensus 73 EnI~irR~~~~e 84 (85) T d1efub4 73 ENINIRRVAALE 84 (85) T ss_dssp SCCEEEEEEEEE T ss_pred CCEEEEEEEEEE T ss_conf 898986789856 No 6 >d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=99.79 E-value=7.7e-20 Score=149.82 Aligned_cols=54 Identities=56% Similarity=0.885 Sum_probs=52.4 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 735589999999871999899999999629998999999998238899865103 Q gi|254780778|r 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGR 55 (296) Q Consensus 2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R 55 (296) |+||+++||+||++||+||||||+||++++||+|+|++|||++|+++|.||+|+ T Consensus 1 a~is~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~Lr~kG~~~A~Kk~Gn 54 (54) T d1efub3 1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGN 54 (54) T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTS T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 947899999999986987999999999838999999999999718899874479 No 7 >d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Probab=99.77 E-value=2.1e-19 Score=146.96 Aligned_cols=55 Identities=29% Similarity=0.358 Sum_probs=53.1 Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7355899999998719998999999996299989999999982388998651033 Q gi|254780778|r 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRK 56 (296) Q Consensus 2 a~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R~ 56 (296) |.+|+++||+||++||+||||||+||++++||+|+|++|||++|+++|.||++|. T Consensus 1 sa~s~~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~LrkkG~a~a~kKa~Rl 55 (56) T d1xb2b1 1 SASSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARL 55 (56) T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9044999999999869889999999998389999999999998898899886653 No 8 >d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=99.75 E-value=8.9e-19 Score=142.74 Aligned_cols=51 Identities=47% Similarity=0.668 Sum_probs=49.4 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 589999999871999899999999629998999999998238899865103 Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGR 55 (296) Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG~~~A~Kk~~R 55 (296) ++++||+||++||+||||||+||+|++||+|+|++|||++|+++|+|+++| T Consensus 2 ~~elvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~Lr~~G~~kA~Kk~~R 52 (52) T d1aipc1 2 QMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADR 52 (52) T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTS T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 188999999986987999999999839999999999999758988874489 No 9 >d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Probab=99.05 E-value=4.1e-11 Score=91.69 Aligned_cols=92 Identities=32% Similarity=0.387 Sum_probs=70.9 Q ss_pred HHHHHHHHEEC-CCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHH-CCCCH-------------------------- Q ss_conf 64220000440-788536999984031010226799999988875310-33565-------------------------- Q gi|254780778|r 57 VSEGLIGIARD-GYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALS-TDGSL-------------------------- 108 (296) Q Consensus 57 a~eG~v~~~~~-~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~-~~~~~-------------------------- 108 (296) |.||+|+.|.. +.+.|+|++++|+||||++|+.|..|+++++..+.. +|..+ T Consensus 1 a~eG~v~~YiH~~gkigvlv~l~~~~d~~~~~~~~~~~ak~iAmhiaA~~P~~i~~~~v~~~~i~~E~ei~~~~~~~~gK 80 (142) T d1tfea_ 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGK 80 (142) T ss_dssp CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHTTTC T ss_pred CCCCEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCC T ss_conf 99878999983899679999997356123201578999999986554038653885678799999999998777540453 Q ss_pred -------------------HHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf -------------------77864004-10000146778999985434310244431022 Q gi|254780778|r 109 -------------------DNVLAMPF-DHSGITVGDGIKQQIAITGECIKLRRSALLCV 148 (296) Q Consensus 109 -------------------~~~~~~~~-~~~~~tv~d~i~~~ia~iGEnI~l~R~~~~~~ 148 (296) ..++.+++ .++..||++++.+..+.+|+||.|.||.+|.. T Consensus 81 P~~i~ekIv~Gk~~Kf~~E~~LleQ~fv~D~~~tV~~~l~~~~~~~g~~i~i~~F~R~~v 140 (142) T d1tfea_ 81 PQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFEL 140 (142) T ss_dssp CHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEET T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEE T ss_conf 788999999999998888763205874059984099999998986089808999999983 No 10 >d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Probab=98.34 E-value=2.4e-07 Score=66.61 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=78.9 Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHH Q ss_conf 222100000135323460344344430354321---57899988565566765433204587836277776656667763 Q gi|254780778|r 148 VSEGVISSYLHASPSEGLGSIGVLVALQSSAED---KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEA 224 (296) Q Consensus 148 ~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~---~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~ 224 (296) +.+|.++.|.. |+.|+||++.+.++- .+.++.|+++||||+++..|......... T Consensus 4 a~EG~I~i~~~-------~~~~~ivElNcETDFVArn~~F~~la~~ia~~~~~~~~~~~~~~~~~--------------- 61 (111) T d1xb2b2 4 TKEGLIGLLQE-------GDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTY--------------- 61 (111) T ss_dssp CCEEEEEEEEE-------TTEEEEEEEEESCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSC--------------- T ss_pred CCCCEEEEEEC-------CCEEEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH--------------- T ss_conf 66627999968-------98699999944551665148899999999999997276508888655--------------- Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEE Q ss_conf 12578678997774016766642333025600027774399999877642079828998898762 Q gi|254780778|r 225 LDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVV 289 (296) Q Consensus 225 ~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~l 289 (296) ...++....|.+|++..++..||++++.+.-..+|.+|.|.+|.||++ T Consensus 62 -----------------~~~~~~~~~l~~~~~~~~~~~tv~d~i~~~ia~iGEnI~lrR~~~~~~ 109 (111) T d1xb2b2 62 -----------------SKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKV 109 (111) T ss_dssp -----------------EEEEECHHHHHTSBCCSSSCSBHHHHHHHHHHHHCSCEEEEEEEEEEC T ss_pred -----------------HHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEC T ss_conf -----------------553311002666521466798299999998645278989987899863 No 11 >d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Probab=96.61 E-value=0.0011 Score=42.33 Aligned_cols=80 Identities=15% Similarity=0.261 Sum_probs=62.1 Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHH Q ss_conf 222100000135323460344344430354321---57899988565566765433204587836277776656667763 Q gi|254780778|r 148 VSEGVISSYLHASPSEGLGSIGVLVALQSSAED---KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEA 224 (296) Q Consensus 148 ~~~~~v~~Y~H~~~~~~~GkigvlV~l~~~~~~---~~~~~~~ak~iAmhiaA~~P~~l~~~~v~~~~i~~Ek~i~~~~~ 224 (296) +.+|.++.|+++ +.|+||++.+.++- .+.+++|+++|+.|+.+.+|..+.. T Consensus 2 A~EG~I~~~~~~-------~~~~ivEvncETDFVAkne~F~~l~~~i~~~~~~~~~~~~~~------------------- 55 (85) T d1efub4 2 AADGVIKTKIDG-------NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEV------------------- 55 (85) T ss_dssp CCEEEEEEEEET-------TEEEEEEEEESCHHHHTCHHHHHHHHHHHHHHHHTTCCCHHH------------------- T ss_pred CCCEEEEEEECC-------CEEEEEEEECCCCCHHCCHHHHHHHHHHHHHHHHCCCCCHHH------------------- T ss_conf 666089999769-------869999995467303224679999999999998659645888------------------- Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 1257867899777401676664233302560002777439999987764207982899889876 Q gi|254780778|r 225 LDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFV 288 (296) Q Consensus 225 ~~~gKp~~i~ekIv~Gkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~e~~k~~g~~i~I~~F~R~~ 288 (296) + ..||.+++.+.-.++|.+|.|.+|.+++ T Consensus 56 ---------------------------~--------~~~v~e~~~~~iakiGEnI~irR~~~~e 84 (85) T d1efub4 56 ---------------------------L--------KAQFEEERVALVAKIGENINIRRVAALE 84 (85) T ss_dssp ---------------------------H--------HHHHHHHHHHHHHHHCSCCEEEEEEEEE T ss_pred ---------------------------H--------HCHHHHHHHHHHHHHCCCEEEEEEEEEE T ss_conf ---------------------------7--------0637899999988736898986789856 No 12 >d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Probab=95.84 E-value=0.0076 Score=36.69 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=34.6 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 355899999998719998999999996299989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .+....|.+|=++ |-+-..|++||..++||++.|++||-.. T Consensus 7 ~~d~~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~~wL~~~ 47 (63) T d1wjia_ 7 GVDEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTS 47 (63) T ss_dssp SSCHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHHC T ss_conf 5699999999996-9999999999999198999999999978 No 13 >d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=95.66 E-value=0.0097 Score=35.97 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=33.0 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 5589999999871999899999999629998999999998 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) ++-+.|.+|.++ |..--.|++||..|+||+|.|++||-. T Consensus 28 ~~ee~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Ll~ 66 (73) T d1vg5a_ 28 ASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMS 66 (73) T ss_dssp CCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHT T ss_pred CCHHHHHHHHHH-CCCHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 689999999995-899999999999918999999999982 No 14 >d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Probab=95.27 E-value=0.011 Score=35.64 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 899999998719998999999996299989999999982 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .+.|.+|-++ |-+-..|++||..|+||+|.|++||-.. T Consensus 20 e~~v~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~Lls~ 57 (63) T d1wgna_ 20 RQCVETVVNM-GYSYECVLRAMKKKGENIEQILDYLFAH 57 (63) T ss_dssp HHHHHHHHHH-HCCHHHHHHHHHHHCSCHHHHHHHHHHH T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 9999999986-9989999999999099999999999928 No 15 >d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Probab=94.95 E-value=0.021 Score=33.68 Aligned_cols=39 Identities=33% Similarity=0.426 Sum_probs=35.9 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 999999987199989999999962999899999999823 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296) ..||+|.+.||.+--+|-=||-.|++|+..||.+|-+-+ T Consensus 34 ~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~lLEg~ 72 (91) T d1wj7a1 34 EKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 72 (91) T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCC T ss_conf 999999999678899999998517853999999999557 No 16 >d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=94.89 E-value=0.029 Score=32.79 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=34.1 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 355899999998719998999999996299989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) .+..+.|.+|=+ -|-+--.|++||..++||++.|++||-.. T Consensus 27 ~~d~~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~Av~~Lls~ 67 (73) T d1wiva_ 27 DIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73) T ss_dssp SSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHS T ss_pred CCCHHHHHHHHH-CCCCHHHHHHHHHHCCCCHHHHHHHHHCC T ss_conf 989999999993-69999999999999299999999999818 No 17 >d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Probab=94.05 E-value=0.025 Score=33.22 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=30.6 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHH Q ss_conf 5899999998719998999999996299-9899999999 Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILR 42 (296) Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LR 42 (296) +...|.+|=+ =|-+--.|++||..++| |+|.|++||= T Consensus 12 ~~~~l~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~~WLl 49 (51) T d2cpwa1 12 HGSALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLF 49 (51) T ss_dssp CCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHH T ss_pred CHHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 9999999999-5999999999999977999999999997 No 18 >d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Probab=94.01 E-value=0.015 Score=34.73 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=49.3 Q ss_pred CCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHHCC-CCH------------HHHHHCCC-CCCCHHHHHHHHHHHHHH Q ss_conf 8853699998403101022679999998887531033-565------------77864004-100001467789999854 Q gi|254780778|r 69 YKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTD-GSL------------DNVLAMPF-DHSGITVGDGIKQQIAIT 134 (296) Q Consensus 69 ~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~~~-~~~------------~~~~~~~~-~~~~~tv~d~i~~~ia~i 134 (296) .+.++|+.++|. .++..|..|+++|+..+...+ ..+ ..++.++| .+..+||++.+.+ T Consensus 23 Gkig~lv~~~~~----~~~~~~~~l~k~iAmhIaA~~P~~i~~~~~~~~~~~E~~Ll~Q~fvkD~~~tV~~~l~~----- 93 (109) T d1xb2b3 23 GKYGALVICETS----ELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSITLGQYVQP----- 93 (109) T ss_dssp ESEEEEEEEECC----SCGGGCHHHHHHHHHHHHHHCCSBCCCTTSCCCGGGCCBGGGSBCTTCTTSBHHHHHGG----- T ss_pred CCEEEEEEECCC----CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCHHHHHHH----- T ss_conf 509999997258----87668889989999999833981028544434442011121454121896279999987----- Q ss_pred HHHHHHHHHHHCCCCCC Q ss_conf 34310244431022221 Q gi|254780778|r 135 GECIKLRRSALLCVSEG 151 (296) Q Consensus 135 GEnI~l~R~~~~~~~~~ 151 (296) +|+.+.||.+|+..+| T Consensus 94 -~~i~v~~F~Rf~vGEG 109 (109) T d1xb2b3 94 -HGVSVVDFVRFECGEG 109 (109) T ss_dssp -GTCEEEEEEEEETTCC T ss_pred -CCCEEEEEEEEEECCC T ss_conf -7998999999983589 No 19 >d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Probab=93.82 E-value=0.069 Score=30.30 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=31.2 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 9999999871999899999999629998999999998 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) ..+-+||++-=.----|-.||..++||+++||+.|.. T Consensus 4 ~QL~~L~~MGF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~ 40 (41) T d2daha1 4 VQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ 40 (41) T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 9999999859997899999999839989999999975 No 20 >d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Probab=93.55 E-value=0.036 Score=32.15 Aligned_cols=41 Identities=22% Similarity=0.135 Sum_probs=32.8 Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCC-CHHHHHHHHHHH Q ss_conf 355899999998719998999999996299-989999999982 Q gi|254780778|r 3 KVSAVAVKELRGKTGAGIMDCKNALLEAKG-DSELAIDILRTK 44 (296) Q Consensus 3 ~it~~~iK~LR~~Tgag~~dCKkAL~e~~g-D~e~Ai~~LRkk 44 (296) .+..++|.+|=+ -|-+--.|++||..++| |+|.|++||-.. T Consensus 7 ~~d~~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h 48 (64) T d1whca_ 7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64) T ss_dssp CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 559999999999-599999999999994899999999999987 No 21 >d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Probab=93.43 E-value=0.081 Score=29.84 Aligned_cols=37 Identities=27% Similarity=0.263 Sum_probs=31.0 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 8999999987199989999999962999899999999 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296) ...+-+||++-=.----|-+||..++||++.||++|- T Consensus 23 ~~QL~qL~eMGF~d~~~Nl~AL~~t~Gdv~~Aie~Ll 59 (61) T d1veja1 23 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLL 59 (61) T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 9999999993899789999999991898999999986 No 22 >d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Probab=93.36 E-value=0.095 Score=29.39 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=31.7 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 99999998719998999999996299989999999982 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTK 44 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkk 44 (296) ..+-+||++-=.---.|-+||..++||++.||+.|... T Consensus 10 ~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~ 47 (50) T d2dnaa1 10 KEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 47 (50) T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 99999999499979999999999399899999999865 No 23 >d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=92.91 E-value=0.091 Score=29.50 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=29.0 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 99999998719998999999996299989999999 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296) ..+.+||++-=.---.|-+||..++||+..||+.| T Consensus 7 ~QL~qL~~MGF~d~~~Ni~AL~~t~GdV~~Aie~L 41 (44) T d2bwba1 7 HQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSL 41 (44) T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHH T ss_conf 99999999499968999999999499899999998 No 24 >d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Probab=92.83 E-value=0.029 Score=32.77 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=28.5 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 99999998719998999999996299989999999 Q gi|254780778|r 7 VAVKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41 (296) Q Consensus 7 ~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296) +.|.+|-+ -|-+--.|++||..++||+|.|++|| T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~N~e~A~~~L 39 (41) T d1oqya1 6 TMLTEIMS-MGYERERVVAALRASYNNPHRAVEYL 39 (41) T ss_dssp HHHHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTT T ss_pred HHHHHHHH-CCCCHHHHHHHHHHHCCCHHHHHHHH T ss_conf 99999998-59989999999998589999999987 No 25 >d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=91.39 E-value=0.22 Score=27.01 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=32.6 Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCC-CCHHHHHHHHHHH Q ss_conf 5589999999871999899999999629-9989999999982 Q gi|254780778|r 4 VSAVAVKELRGKTGAGIMDCKNALLEAK-GDSELAIDILRTK 44 (296) Q Consensus 4 it~~~iK~LR~~Tgag~~dCKkAL~e~~-gD~e~Ai~~LRkk 44 (296) +....|.+|-+ -|-+--.|++||..++ +|++.|++||-.. T Consensus 28 ~d~~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h 68 (84) T d1veka_ 28 ANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84) T ss_dssp CCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHH T ss_pred CCHHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 99999999999-599999999999997699999999999986 No 26 >d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]} Probab=90.49 E-value=0.23 Score=26.86 Aligned_cols=39 Identities=31% Similarity=0.420 Sum_probs=31.9 Q ss_pred HHHHHHHHHHCCC-HHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 9999999871999-89999999962999899999999823 Q gi|254780778|r 7 VAVKELRGKTGAG-IMDCKNALLEAKGDSELAIDILRTKG 45 (296) Q Consensus 7 ~~iK~LR~~Tgag-~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296) .++.+||+.||-- ..---.||..++||+..|+-+|-.+- T Consensus 26 ~lLNQLrEITGIqD~q~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80) T d1vdla_ 26 TFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80) T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC T ss_conf 9999999973778599999999803788999999986278 No 27 >d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} Probab=90.07 E-value=0.14 Score=28.32 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCC-CCHHHHHHHHHHH Q ss_conf 89999999871999899999999629-9989999999982 Q gi|254780778|r 6 AVAVKELRGKTGAGIMDCKNALLEAK-GDSELAIDILRTK 44 (296) Q Consensus 6 ~~~iK~LR~~Tgag~~dCKkAL~e~~-gD~e~Ai~~LRkk 44 (296) +..|.+|=+ =|-+--.|++||..++ ++++.|++||-.. T Consensus 3 p~~v~~L~~-MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h 41 (51) T d2crna1 3 PSLLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHDH 41 (51) T ss_dssp CSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHHH T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 999999999-699999999999997799999999999986 No 28 >d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=90.05 E-value=0.28 Score=26.21 Aligned_cols=45 Identities=24% Similarity=0.219 Sum_probs=38.3 Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 973558999999987199989999999962999899999999823 Q gi|254780778|r 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45 (296) Q Consensus 1 Ma~it~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LRkkG 45 (296) ||.---.+|.+....||+.--.++.-|+.++||++.|+..--..| T Consensus 1 ma~~~~~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~yfe~g 45 (46) T d1v92a_ 1 MAEERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46) T ss_dssp CTTHHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCC T ss_conf 976399999999999895999999999995996999999998658 No 29 >d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Probab=89.41 E-value=0.079 Score=29.89 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=25.3 Q ss_pred HHHHEECCCCCEEEEEEEEECCHHHCCHHHHHHHHHHHHHHHHCC Q ss_conf 000044078853699998403101022679999998887531033 Q gi|254780778|r 61 LIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTD 105 (296) Q Consensus 61 ~v~~~~~~~~~a~liEincETDFVAkn~~F~~l~~~i~~~~l~~~ 105 (296) +|+.|..|++.|+|+.++|++ .+|+++++..+...+ T Consensus 2 vi~sYiH~gkigvlV~~~~~~---------~e~ak~iAMHIAA~~ 37 (143) T d1efub2 2 VLGSYQHGARIGVLVAAKGAD---------EELVKHIAMHVAASK 37 (143) T ss_dssp EEEEEEETTTEEEEEEEESCC---------HHHHHHHHHHHHHHC T ss_pred EEEEEECCCEEEEEEEECCCC---------HHHHHHHHHHHHCCC T ss_conf 189976499899999965860---------999998888985368 No 30 >d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]} Probab=86.12 E-value=0.91 Score=22.86 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=34.7 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 58999999987199989999999962999899999999 Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILR 42 (296) Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~gD~e~Ai~~LR 42 (296) --++|.++-..||--.-=|.+.|+++++|+++|+.... T Consensus 7 Qq~mv~~~s~~T~mn~e~s~~cLe~~~Wd~~~A~~~F~ 44 (59) T d1oaia_ 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59) T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 99999999999798899999999985989999999999 No 31 >d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Probab=81.04 E-value=0.54 Score=24.34 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=26.4 Q ss_pred HHHHHHCCCH--HHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 9998719998--99999999629998999999998 Q gi|254780778|r 11 ELRGKTGAGI--MDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 11 ~LR~~Tgag~--~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) .+++.+|-|+ -..++||+.++||++.|..+|-. T Consensus 7 ai~eL~~MGF~e~~A~~AL~k~~wnleaAtN~LLd 41 (43) T d2g3qa1 7 AVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43) T ss_dssp HHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHT T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 99999955878899999999858979999999870 No 32 >d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=70.27 E-value=1.9 Score=20.78 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.3 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHC Q ss_conf 58999999987199989999999962 Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEA 30 (296) Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~ 30 (296) ..+.||.+|+.||-|+++.|+..+.+ T Consensus 13 KI~vIK~VR~it~lgLkEAK~lVe~~ 38 (71) T d1dd3a2 13 KIQVIKVVREITGLGLKEAKDLVEKA 38 (71) T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHTTT T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 23577899872698789999999816 No 33 >d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=69.92 E-value=2.3 Score=20.17 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.4 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHCC Q ss_conf 589999999871999899999999629 Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEAK 31 (296) Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~~ 31 (296) ..+.||.+|..||.|+++.|+..+.+. T Consensus 13 Ki~vIK~VR~it~lgLkEAK~lVe~~P 39 (68) T d1ctfa_ 13 KVAVIKAVRGATGLGLKEAKDLVESAP 39 (68) T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHTCS T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCC T ss_conf 468999999845987999999987288 No 34 >d2zjq51 d.45.1.1 (5:52-122) Ribosomal protein L7/12, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Probab=68.79 E-value=1.5 Score=21.33 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=21.1 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHC Q ss_conf 58999999987199989999999962 Q gi|254780778|r 5 SAVAVKELRGKTGAGIMDCKNALLEA 30 (296) Q Consensus 5 t~~~iK~LR~~Tgag~~dCKkAL~e~ 30 (296) ..+.||.+|..||.|+++.|+ |.++ T Consensus 17 Ki~vIK~VR~it~LgLkeAK~-lVe~ 41 (71) T d2zjq51 17 KINVIKEIRGITGLGLKEAKD-MSEK 41 (71) T ss_pred HHHHHHHHHHHCCCCHHHHHH-HCCC T ss_conf 036899998865998899986-2138 No 35 >d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Probab=44.13 E-value=9 Score=16.21 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=29.0 Q ss_pred CCHHHHHHHHHHH-CCCHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 5589999999871-999899999999629998999999998 Q gi|254780778|r 4 VSAVAVKELRGKT-GAGIMDCKNALLEAKGDSELAIDILRT 43 (296) Q Consensus 4 it~~~iK~LR~~T-gag~~dCKkAL~e~~gD~e~Ai~~LRk 43 (296) -+-+.++.|+++= +.----.+-.|.+++|++|.||+-|-. T Consensus 8 ~~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~ 48 (59) T d1wgla_ 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59) T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 76999999999878877999999999939977999999985 No 36 >d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]} Probab=34.76 E-value=13 Score=15.26 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=21.7 Q ss_pred HCCCHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 19998999999996299989999999 Q gi|254780778|r 16 TGAGIMDCKNALLEAKGDSELAIDIL 41 (296) Q Consensus 16 Tgag~~dCKkAL~e~~gD~e~Ai~~L 41 (296) -|-.-.+.-+||..+|||++-|--+| T Consensus 12 mgfdpleaaqaldaangdldvaasfl 37 (38) T d1z96a1 12 MGFDPLEAAQALDAANGDLDVAASFL 37 (38) T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHH T ss_conf 27887899988754057578889862 No 37 >d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]} Probab=21.67 E-value=13 Score=15.10 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=5.2 Q ss_pred HHH-HHHHCCCCC Q ss_conf 434-443035432 Q gi|254780778|r 168 IGV-LVALQSSAE 179 (296) Q Consensus 168 igv-lV~l~~~~~ 179 (296) +|. ++.+.++.+ T Consensus 62 ~G~Lil~l~G~~~ 74 (97) T d2qrra1 62 FGMMVAELFGNEQ 74 (97) T ss_dssp EEEEEEEEESCHH T ss_pred EEEEEEEEECCHH T ss_conf 8999999978999 No 38 >d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]} Probab=21.44 E-value=13 Score=15.05 Aligned_cols=10 Identities=10% Similarity=-0.124 Sum_probs=3.9 Q ss_pred HHHHHHHHHH Q ss_conf 7899998543 Q gi|254780778|r 126 GIKQQIAITG 135 (296) Q Consensus 126 ~i~~~ia~iG 135 (296) .+.+++...| T Consensus 29 vis~l~r~~~ 38 (90) T d2qswa1 29 IISHIVQEYQ 38 (90) T ss_dssp HHHHHHHHHT T ss_pred HHHHHHHHHC T ss_conf 9999999859 Done!