PSIBLAST alignment of GI: 254780778 and protein with PDB id: 3agp

>gi|305677666|pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289
>gi|305677667|pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii Length = 1289
 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 104/294 (35%), Positives = 153/294 (52%), Gaps = 28/294 (9%)

Query: 1   MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60
           M++++A  VKELR +TGAG+MDCK AL EA GD ELAI+ +R  GA+ A+K+ G   ++G
Sbjct: 1   MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADG 60

Query: 61  LIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSG 120
           +I    DG     I+EVN +TD +AK+  FQ+    +   A++   +   VL   F+   
Sbjct: 61  VIKTKIDG-NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEER 119

Query: 121 ITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED 180
           +         +A  GE I +RR A   +   V+ SY H         IGVLVA + + E 
Sbjct: 120 V-------ALVAKIGENINIRRVA--ALEGDVLGSYQHG------ARIGVLVAAKGADE- 163

Query: 181 KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240
                 + + IA+HV  + P  I  + +   +V  +    +  A+ SGK   I EK+V G
Sbjct: 164 -----ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG 218

Query: 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKEND 294
           +M+ F  E  L  Q FV++PSKTV   LKE       + EV G   F VG+  +
Sbjct: 219 RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGIE 266