PSIBLAST alignment of GI: 254780778 and protein with PDB id: 3agp
>gi|305677666|pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289
>gi|305677667|pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii Length = 1289
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 104/294 (35%), Positives = 153/294 (52%), Gaps = 28/294 (9%)
Query: 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60
M++++A VKELR +TGAG+MDCK AL EA GD ELAI+ +R GA+ A+K+ G ++G
Sbjct: 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADG 60
Query: 61 LIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSG 120
+I DG I+EVN +TD +AK+ FQ+ + A++ + VL F+
Sbjct: 61 VIKTKIDG-NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEER 119
Query: 121 ITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED 180
+ +A GE I +RR A + V+ SY H IGVLVA + + E
Sbjct: 120 V-------ALVAKIGENINIRRVA--ALEGDVLGSYQHG------ARIGVLVAAKGADE- 163
Query: 181 KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240
+ + IA+HV + P I + + +V + + A+ SGK I EK+V G
Sbjct: 164 -----ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG 218
Query: 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVGKEND 294
+M+ F E L Q FV++PSKTV LKE + EV G F VG+ +
Sbjct: 219 RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGIE 266