RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780778|ref|YP_003065191.1| elongation factor Ts
[Candidatus Liberibacter asiaticus str. psy62]
         (296 letters)



>gnl|CDD|181810 PRK09377, tsf, elongation factor Ts; Provisional.
          Length = 290

 Score =  275 bits (705), Expect = 1e-74
 Identities = 130/300 (43%), Positives = 171/300 (57%), Gaps = 25/300 (8%)

Query: 1   MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60
           M+ ++A  VKELR +TGAG+MDCK AL EA GD E AI+ LR KG   A+K+ GR  +EG
Sbjct: 1   MAAITAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEG 60

Query: 61  LIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDG-SLDNVLAMPFDHS 119
           L+    DG  K  +VEVN ETD +AKN DFQ+L + +A  AL+     ++ +LA+  D  
Sbjct: 61  LVAAKVDG-NKGVLVEVNSETDFVAKNEDFQALANEVAEAALAAKPADVEALLALKLD-- 117

Query: 120 GITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAE 179
           G TV +   + IA  GE I LRR A L    GV+ SYLH     G G IGVLVAL+   E
Sbjct: 118 GGTVEEARTELIAKIGENISLRRFARLEKDGGVVGSYLH-----GGGRIGVLVALEGGDE 172

Query: 180 DKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVN 239
                  + + IA+H+   +P  +S + +   +V  +R     +A + GK   IVEKIV 
Sbjct: 173 ------ELAKDIAMHIAAMNPEYLSREDVPAEVVEKEREIAKEQAKEEGKPEEIVEKIVE 226

Query: 240 GKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVG----KENDD 295
           G++  F KE VLL Q FV DP KTV   LKE      A  +VVG   F VG    K+ +D
Sbjct: 227 GRLNKFLKEVVLLEQPFVKDPKKTVGQLLKE------AGAKVVGFVRFEVGEGIEKKEED 280


>gnl|CDD|129222 TIGR00116, tsf, translation elongation factor Ts.  This protein is
           found in Bacteria, mitochondria, and chloroplasts.
          Length = 290

 Score =  173 bits (439), Expect = 7e-44
 Identities = 112/275 (40%), Positives = 147/275 (53%), Gaps = 14/275 (5%)

Query: 2   SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGL 61
             ++A  VKELR +TGAG+MDCK AL EA GD E AI  LR  G   A+K+  R  +EG+
Sbjct: 1   MAITAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRESGIAKAAKKADRVAAEGV 60

Query: 62  IGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDG-SLDNVLAMPFDHSG 120
           I +  DG  KA IVEVN ETD +AKN  F+   + +     +    +L+ + A   +   
Sbjct: 61  IVLKSDGN-KAVIVEVNSETDFVAKNAGFKEFANKLLDELKANKITTLEELQAQELE--N 117

Query: 121 ITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED 180
               + +    A  GE I LRR A+L     VI SYLHA        IGVLVAL+  A D
Sbjct: 118 REKVEYLAALAAKIGENINLRRVAVLEGDSNVIGSYLHAG-----ARIGVLVALKGKA-D 171

Query: 181 KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240
           +EL     + IA+HV  + P  I    +   +V  +R     +A  SGK   I EK+V G
Sbjct: 172 EEL----AKHIAMHVAASKPQFIDPDDVSAEVVKKERQIQTDQAELSGKPKEIAEKMVEG 227

Query: 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSI 275
           +M+ F  E  LL Q FV+DPSKTV  FLKE    +
Sbjct: 228 RMKKFLAEISLLGQKFVMDPSKTVGQFLKEKNAKV 262


>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed.
          Length = 198

 Score =  116 bits (293), Expect = 6e-27
 Identities = 49/97 (50%), Positives = 65/97 (67%), Gaps = 3/97 (3%)

Query: 4  VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIG 63
          ++A  VKELR KTGAG+MDCK AL EA GD E AI+ LR KG   A+K+ GR  +EGL+G
Sbjct: 3  ITAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKKAGRVAAEGLVG 62

Query: 64 --IARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIA 98
            I   G +   +VE+N ETD +A+  +F+ L  +IA
Sbjct: 63 SYIHTGG-RIGVLVELNCETDFVARTEEFKELAKDIA 98



 Score = 98.0 bits (245), Expect = 2e-21
 Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 8/145 (5%)

Query: 149 SEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISV 205
           +EG++ SY+H       G IGVLV L    +     E    + + IA+ +  A+P  +S 
Sbjct: 57  AEGLVGSYIHTG-----GRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSR 111

Query: 206 QMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVS 265
           + +   ++  ++  Y  +AL+ GK  NIVEKIV G+++ F KE  LL Q F+ DPSKTV 
Sbjct: 112 EDVPAEVIEKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFIKDPSKTVE 171

Query: 266 DFLKESEKSIGASIEVVGVSHFVVG 290
           D +KE+   IG +I V   + F +G
Sbjct: 172 DLIKEAIAKIGENIVVRRFARFELG 196


>gnl|CDD|177566 PHA03242, PHA03242, envelope glycoprotein M; Provisional.
          Length = 428

 Score = 31.0 bits (70), Expect = 0.39
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 144 ALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED--KELLSAI-----GEKIAVHVM 196
            LL V EGV+S Y+   P   LG++     +  +A     +          G +  V V 
Sbjct: 269 LLLVVVEGVLSHYVRVLPGPHLGALVAAGIVGVAAHRYFTQGYYVAETQWPGAQTGVRVA 328

Query: 197 LASPSVISVQML 208
           LA  ++ ++ M 
Sbjct: 329 LALVALFALAMA 340


>gnl|CDD|173469 PTZ00188, PTZ00188, adrenodoxin reductase; Provisional.
          Length = 506

 Score = 29.5 bits (66), Expect = 1.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 204 SVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGK 241
           SVQM    I  +K A +     D G  GNI  +I+N K
Sbjct: 392 SVQMFKEDIGQHKFAIFKAGWFDKGPKGNIASQILNSK 429


>gnl|CDD|149043 pfam07759, DUF1615, Protein of unknown function (DUF1615).  This is
           a family of proteins of unknown function expressed by
           various bacterial species. Some members of this family
           are thought to be lipoproteins. Another member of this
           family is thought to be involved in photosynthesis.
          Length = 318

 Score = 29.2 bits (66), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 86  KNTDFQSLVSNIAGIALSTDGSL 108
           +N  FQS +S + G  L+ DG L
Sbjct: 195 RNAAFQSALSRLTGKKLALDGDL 217


>gnl|CDD|130050 TIGR00977, LeuA_rel, 2-isopropylmalate synthase/homocitrate
           synthase family protein.  This model represents
           uncharacterized proteins related to 2-isopropylmalate
           synthases and homocitrate synthases but phylogenetically
           distint. Each species represented in the seed alignment
           also has a member of a known family of 2-isopropylmalate
           synthases.
          Length = 526

 Score = 29.5 bits (66), Expect = 1.2
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 21/93 (22%)

Query: 185 SAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQS 244
           SA   K  VHV     +  + + + P +V N+R   ++E   +G S N++ K        
Sbjct: 292 SAFAHKGGVHVSAVQRNPFTYEHIAPELVGNERRIVVSEL--AGLS-NVLSKA------- 341

Query: 245 FCKECVLLHQGFVVDPS----KTVSDFLKESEK 273
             KE      G  +D      +T+   +KE E+
Sbjct: 342 --KE-----FGIEIDRQSPACRTILAKIKELEQ 367


>gnl|CDD|179010 PRK00411, cdc6, cell division control protein 6; Reviewed.
          Length = 394

 Score = 28.3 bits (64), Expect = 2.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 32  GDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEV 77
           GD+ +AID+LR  G + A +   RKV+E  +  A +  +   + EV
Sbjct: 246 GDARVAIDLLRRAG-LIAEREGSRKVTEEDVRKAYEKSEIVHLSEV 290


>gnl|CDD|185565 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase;
           Provisional.
          Length = 482

 Score = 27.8 bits (62), Expect = 3.4
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 83  SLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFD 117
           +LAK ++   +V    GI      S+DN+LA   D
Sbjct: 236 ALAKCSELMDIVRK--GIKYVQVISIDNILAKVLD 268


>gnl|CDD|148500 pfam06915, DUF1278, Protein of unknown function (DUF1278).  This
          family consists of several hypothetical plant specific
          proteins of around 150 residues in length. Members of
          this family contain several conserved cysteine
          residues. The function of the family is unknown.
          Length = 138

 Score = 27.5 bits (61), Expect = 4.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 13 RGKTGAGIMDCKNALLEAK 31
          R + G G+M+C NAL+E K
Sbjct: 47 RLEGGGGLMECWNALMELK 65


>gnl|CDD|163076 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
           protein.  Members of this protein family are found
           exclusively in the archaea. This set of DNA binding
           proteins shows homology to the origin recognition
           complex subunit 1/cell division control protein 6 family
           in eukaryotes. Several members may be found in genome
           and interact with each other.
          Length = 365

 Score = 27.2 bits (61), Expect = 5.0
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 31  KGDSELAIDILRTKGAMAASKREGR-KVSEGLIGIARDGYKKASIVEV 77
            GD+  AID+LR  G +A  +REG  +V+E  +  A++  +K  ++E+
Sbjct: 237 HGDARKAIDLLRVAGEIA--EREGAERVTEDHVEKAQEKIEKDRLLEL 282


>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
          Length = 1013

 Score = 26.9 bits (60), Expect = 6.2
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 75  VEVNVETDSLAKNTDFQSLVSNIA---GIALSTDGSLDNVL----AMPFDH 118
           +E+  +  + A  T     V N A   GI + T+G  DNVL     + F  
Sbjct: 944 IELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSR 994


>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
           Members of this protein family are YgfK, predicted to be
           one subunit of a three-subunit, molybdopterin-containing
           selenate reductase. This enzyme is found, typically, in
           genomic regions associated with xanthine dehydrogenase
           homologs predicted to belong to the selenium-dependent
           molybdenum hydroxylases (SDMH). Therefore, the selenate
           reductase is suggested to play a role in furnishing
           selenide for SelD, the selenophosphate synthase.
          Length = 1012

 Score = 26.7 bits (59), Expect = 7.5
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 17  GAG--IMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSE 59
           G G   MD   A L   G  ++ +   RTK  M AS+ E  +  E
Sbjct: 673 GGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALE 717


>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
           This family represents the NikE subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
          Length = 265

 Score = 26.7 bits (59), Expect = 8.4
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 243 QSFCKECVLLHQGFVVDPSKTVSDF 267
           QSFC+   ++ +G +V+        
Sbjct: 215 QSFCQRVAVMDKGQIVEECDVAQLL 239


>gnl|CDD|183741 PRK12780, fliR, flagellar biosynthesis protein FliR; Reviewed.
          Length = 251

 Score = 26.2 bits (58), Expect = 9.9
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 151 GVISSYLHASPSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVI 203
           G+++SY    P EG G    LV         +L+  + E   + + +ASP +I
Sbjct: 149 GLVASYDRIPPGEGFGGQTALV---------QLVDQLSEAFTLALRIASPFII 192


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.131    0.351 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,492,810
Number of extensions: 280413
Number of successful extensions: 394
Number of sequences better than 10.0: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 20
Length of query: 296
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 203
Effective length of database: 3,984,929
Effective search space: 808940587
Effective search space used: 808940587
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.9 bits)