RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780778|ref|YP_003065191.1| elongation factor Ts [Candidatus Liberibacter asiaticus str. psy62] (296 letters) >gnl|CDD|181810 PRK09377, tsf, elongation factor Ts; Provisional. Length = 290 Score = 275 bits (705), Expect = 1e-74 Identities = 130/300 (43%), Positives = 171/300 (57%), Gaps = 25/300 (8%) Query: 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60 M+ ++A VKELR +TGAG+MDCK AL EA GD E AI+ LR KG A+K+ GR +EG Sbjct: 1 MAAITAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEG 60 Query: 61 LIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDG-SLDNVLAMPFDHS 119 L+ DG K +VEVN ETD +AKN DFQ+L + +A AL+ ++ +LA+ D Sbjct: 61 LVAAKVDG-NKGVLVEVNSETDFVAKNEDFQALANEVAEAALAAKPADVEALLALKLD-- 117 Query: 120 GITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAE 179 G TV + + IA GE I LRR A L GV+ SYLH G G IGVLVAL+ E Sbjct: 118 GGTVEEARTELIAKIGENISLRRFARLEKDGGVVGSYLH-----GGGRIGVLVALEGGDE 172 Query: 180 DKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVN 239 + + IA+H+ +P +S + + +V +R +A + GK IVEKIV Sbjct: 173 ------ELAKDIAMHIAAMNPEYLSREDVPAEVVEKEREIAKEQAKEEGKPEEIVEKIVE 226 Query: 240 GKMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVG----KENDD 295 G++ F KE VLL Q FV DP KTV LKE A +VVG F VG K+ +D Sbjct: 227 GRLNKFLKEVVLLEQPFVKDPKKTVGQLLKE------AGAKVVGFVRFEVGEGIEKKEED 280 >gnl|CDD|129222 TIGR00116, tsf, translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts. Length = 290 Score = 173 bits (439), Expect = 7e-44 Identities = 112/275 (40%), Positives = 147/275 (53%), Gaps = 14/275 (5%) Query: 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGL 61 ++A VKELR +TGAG+MDCK AL EA GD E AI LR G A+K+ R +EG+ Sbjct: 1 MAITAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRESGIAKAAKKADRVAAEGV 60 Query: 62 IGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDG-SLDNVLAMPFDHSG 120 I + DG KA IVEVN ETD +AKN F+ + + + +L+ + A + Sbjct: 61 IVLKSDGN-KAVIVEVNSETDFVAKNAGFKEFANKLLDELKANKITTLEELQAQELE--N 117 Query: 121 ITVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED 180 + + A GE I LRR A+L VI SYLHA IGVLVAL+ A D Sbjct: 118 REKVEYLAALAAKIGENINLRRVAVLEGDSNVIGSYLHAG-----ARIGVLVALKGKA-D 171 Query: 181 KELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNG 240 +EL + IA+HV + P I + +V +R +A SGK I EK+V G Sbjct: 172 EEL----AKHIAMHVAASKPQFIDPDDVSAEVVKKERQIQTDQAELSGKPKEIAEKMVEG 227 Query: 241 KMQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSI 275 +M+ F E LL Q FV+DPSKTV FLKE + Sbjct: 228 RMKKFLAEISLLGQKFVMDPSKTVGQFLKEKNAKV 262 >gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed. Length = 198 Score = 116 bits (293), Expect = 6e-27 Identities = 49/97 (50%), Positives = 65/97 (67%), Gaps = 3/97 (3%) Query: 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIG 63 ++A VKELR KTGAG+MDCK AL EA GD E AI+ LR KG A+K+ GR +EGL+G Sbjct: 3 ITAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKKAGRVAAEGLVG 62 Query: 64 --IARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIA 98 I G + +VE+N ETD +A+ +F+ L +IA Sbjct: 63 SYIHTGG-RIGVLVELNCETDFVARTEEFKELAKDIA 98 Score = 98.0 bits (245), Expect = 2e-21 Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 8/145 (5%) Query: 149 SEGVISSYLHASPSEGLGSIGVLVALQSSAE---DKELLSAIGEKIAVHVMLASPSVISV 205 +EG++ SY+H G IGVLV L + E + + IA+ + A+P +S Sbjct: 57 AEGLVGSYIHTG-----GRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSR 111 Query: 206 QMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPSKTVS 265 + + ++ ++ Y +AL+ GK NIVEKIV G+++ F KE LL Q F+ DPSKTV Sbjct: 112 EDVPAEVIEKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFIKDPSKTVE 171 Query: 266 DFLKESEKSIGASIEVVGVSHFVVG 290 D +KE+ IG +I V + F +G Sbjct: 172 DLIKEAIAKIGENIVVRRFARFELG 196 >gnl|CDD|177566 PHA03242, PHA03242, envelope glycoprotein M; Provisional. Length = 428 Score = 31.0 bits (70), Expect = 0.39 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 7/72 (9%) Query: 144 ALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAED--KELLSAI-----GEKIAVHVM 196 LL V EGV+S Y+ P LG++ + +A + G + V V Sbjct: 269 LLLVVVEGVLSHYVRVLPGPHLGALVAAGIVGVAAHRYFTQGYYVAETQWPGAQTGVRVA 328 Query: 197 LASPSVISVQML 208 LA ++ ++ M Sbjct: 329 LALVALFALAMA 340 >gnl|CDD|173469 PTZ00188, PTZ00188, adrenodoxin reductase; Provisional. Length = 506 Score = 29.5 bits (66), Expect = 1.1 Identities = 15/38 (39%), Positives = 19/38 (50%) Query: 204 SVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGK 241 SVQM I +K A + D G GNI +I+N K Sbjct: 392 SVQMFKEDIGQHKFAIFKAGWFDKGPKGNIASQILNSK 429 >gnl|CDD|149043 pfam07759, DUF1615, Protein of unknown function (DUF1615). This is a family of proteins of unknown function expressed by various bacterial species. Some members of this family are thought to be lipoproteins. Another member of this family is thought to be involved in photosynthesis. Length = 318 Score = 29.2 bits (66), Expect = 1.2 Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 86 KNTDFQSLVSNIAGIALSTDGSL 108 +N FQS +S + G L+ DG L Sbjct: 195 RNAAFQSALSRLTGKKLALDGDL 217 >gnl|CDD|130050 TIGR00977, LeuA_rel, 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. Length = 526 Score = 29.5 bits (66), Expect = 1.2 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 21/93 (22%) Query: 185 SAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQS 244 SA K VHV + + + + P +V N+R ++E +G S N++ K Sbjct: 292 SAFAHKGGVHVSAVQRNPFTYEHIAPELVGNERRIVVSEL--AGLS-NVLSKA------- 341 Query: 245 FCKECVLLHQGFVVDPS----KTVSDFLKESEK 273 KE G +D +T+ +KE E+ Sbjct: 342 --KE-----FGIEIDRQSPACRTILAKIKELEQ 367 >gnl|CDD|179010 PRK00411, cdc6, cell division control protein 6; Reviewed. Length = 394 Score = 28.3 bits (64), Expect = 2.6 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 32 GDSELAIDILRTKGAMAASKREGRKVSEGLIGIARDGYKKASIVEV 77 GD+ +AID+LR G + A + RKV+E + A + + + EV Sbjct: 246 GDARVAIDLLRRAG-LIAEREGSRKVTEEDVRKAYEKSEIVHLSEV 290 >gnl|CDD|185565 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase; Provisional. Length = 482 Score = 27.8 bits (62), Expect = 3.4 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Query: 83 SLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFD 117 +LAK ++ +V GI S+DN+LA D Sbjct: 236 ALAKCSELMDIVRK--GIKYVQVISIDNILAKVLD 268 >gnl|CDD|148500 pfam06915, DUF1278, Protein of unknown function (DUF1278). This family consists of several hypothetical plant specific proteins of around 150 residues in length. Members of this family contain several conserved cysteine residues. The function of the family is unknown. Length = 138 Score = 27.5 bits (61), Expect = 4.5 Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 13 RGKTGAGIMDCKNALLEAK 31 R + G G+M+C NAL+E K Sbjct: 47 RLEGGGGLMECWNALMELK 65 >gnl|CDD|163076 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. Length = 365 Score = 27.2 bits (61), Expect = 5.0 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 3/48 (6%) Query: 31 KGDSELAIDILRTKGAMAASKREGR-KVSEGLIGIARDGYKKASIVEV 77 GD+ AID+LR G +A +REG +V+E + A++ +K ++E+ Sbjct: 237 HGDARKAIDLLRVAGEIA--EREGAERVTEDHVEKAQEKIEKDRLLEL 282 >gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional. Length = 1013 Score = 26.9 bits (60), Expect = 6.2 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 7/51 (13%) Query: 75 VEVNVETDSLAKNTDFQSLVSNIA---GIALSTDGSLDNVL----AMPFDH 118 +E+ + + A T V N A GI + T+G DNVL + F Sbjct: 944 IELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSR 994 >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 Score = 26.7 bits (59), Expect = 7.5 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 17 GAG--IMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSE 59 G G MD A L G ++ + RTK M AS+ E + E Sbjct: 673 GGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALE 717 >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. Length = 265 Score = 26.7 bits (59), Expect = 8.4 Identities = 6/25 (24%), Positives = 12/25 (48%) Query: 243 QSFCKECVLLHQGFVVDPSKTVSDF 267 QSFC+ ++ +G +V+ Sbjct: 215 QSFCQRVAVMDKGQIVEECDVAQLL 239 >gnl|CDD|183741 PRK12780, fliR, flagellar biosynthesis protein FliR; Reviewed. Length = 251 Score = 26.2 bits (58), Expect = 9.9 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Query: 151 GVISSYLHASPSEGLGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPSVI 203 G+++SY P EG G LV +L+ + E + + +ASP +I Sbjct: 149 GLVASYDRIPPGEGFGGQTALV---------QLVDQLSEAFTLALRIASPFII 192 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.313 0.131 0.351 Gapped Lambda K H 0.267 0.0647 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,492,810 Number of extensions: 280413 Number of successful extensions: 394 Number of sequences better than 10.0: 1 Number of HSP's gapped: 384 Number of HSP's successfully gapped: 20 Length of query: 296 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 203 Effective length of database: 3,984,929 Effective search space: 808940587 Effective search space used: 808940587 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 57 (25.9 bits)