RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780778|ref|YP_003065191.1| elongation factor Ts
[Candidatus Liberibacter asiaticus str. psy62]
(296 letters)
>1efu_B Elongation factor TS; complex (TWO elongation factors);
2.50A {Escherichia coli} (B:1-265)
Length = 265
Score = 207 bits (529), Expect = 9e-55
Identities = 100/289 (34%), Positives = 144/289 (49%), Gaps = 28/289 (9%)
Query: 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGL 61
++++A VKELR +TGAG+MDCK AL EA GD ELAI+ +R GA+ A+K+ G ++G+
Sbjct: 1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGV 60
Query: 62 IGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGI 121
I DG I+EVN +TD +AK+ FQ+ + A++ +
Sbjct: 61 IKTKIDG-NYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGK-------ITDVEVLKA 112
Query: 122 TVGDGIKQQIAITGECIKLRRSALLCVSEGVISSYLHASPSEGLGSIGVLVALQSSAEDK 181
+ +A GE I +RR A + V+ SY H IGVLVA K
Sbjct: 113 QFEEERVALVAKIGENINIRRVA--ALEGDVLGSYQHG------ARIGVLVAA------K 158
Query: 182 ELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGK 241
+ + IA+HV + P I + + +V + + A+ SGK I EK+V G+
Sbjct: 159 GADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGR 218
Query: 242 MQSFCKECVLLHQGFVVDPSKTVSDFLKESEKSIGASIEVVGVSHFVVG 290
M+ F E L Q FV++PSKTV LKE + EV G F VG
Sbjct: 219 MKKFTGEVSLTGQPFVMEPSKTVGQLLKE------HNAEVTGFIRFEVG 261
>1aip_C EF-TS, elongation factor TS; nucleotide exchange,
GTP-binding, complex of two elongation factors; 3.00A
{Thermus thermophilus} (C:1-104,C:164-196)
Length = 137
Score = 123 bits (310), Expect = 3e-29
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 13/140 (9%)
Query: 4 VSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEGLIG 63
+K+LR TGAG+MD K AL +A D E A+ +LR +GAM A+K+ R+ EG+IG
Sbjct: 2 SQMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIG 61
Query: 64 IA-RDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGIT 122
+ +VE+N ETD +A+N FQ+L ++A + +
Sbjct: 62 HYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMM------------NDDKVK 109
Query: 123 VGDGIKQQIAITGECIKLRR 142
V + I+Q IA GE I +RR
Sbjct: 110 VKELIQQAIAKIGENIVVRR 129
Score = 26.7 bits (59), Expect = 3.7
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 259 DPSKTVSDFLKESEKSIGASIEVVGVSHFVVG 290
D V + ++++ IG +I V F +G
Sbjct: 105 DDKVKVKELIQQAIAKIGENIVVRRFCRFELG 136
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT;
protein-protein complex, translation; HET: MSE; 2.20A
{Bos taurus} (B:46-291)
Length = 246
Score = 100 bits (251), Expect = 2e-22
Identities = 61/278 (21%), Positives = 106/278 (38%), Gaps = 67/278 (24%)
Query: 44 KGAMAASKREGRKVSEGLIGIARDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALS 103
+G A++ GRK EGLIG+ ++G +VEVN ETD +++N FQ LV +A L
Sbjct: 2 EGWSKAARLHGRKTKEGLIGLLQEG-DTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLL 60
Query: 104 TDGSLDNVLAMPF---------------DHSGITVGDGIKQQIAITGECIKLRRSALLCV 148
+L + L+ ++ D + I GE + L+R+A + V
Sbjct: 61 HCQNLKDQLSTYSKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKV 120
Query: 149 -SEGVISSYLHASPSEG------LGSIGVLVALQSSAEDKELLSAIGEKIAVHVMLASPS 201
+ + SY+H + LG G LV ++E K L+ +G ++ HV
Sbjct: 121 PAGFYVGSYVHGAMHSPSLHNLVLGKYGALVIC-ETSELKANLADLGRRLGQHV------ 173
Query: 202 VISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDPS 261
+ S ++ E +L Q +++DPS
Sbjct: 174 ----------------------VGMAPLSVGSLDDEPG-----GEAETKMLSQPYLLDPS 206
Query: 262 KTVSDFLKESEKSIGASIEVVGVSHFVVG----KENDD 295
T+ +++ + VV F G + +
Sbjct: 207 ITLGQYVQP------HGVSVVDFVRFECGEGEDAADAE 238
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA,
structural genomics, human, NPPSFA; NMR {Homo sapiens}
(A:)
Length = 64
Score = 82.8 bits (205), Expect = 5e-17
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 1 MSKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKGAMAASKREGRKVSEG 60
S S + +LR KTG ++CK AL GD + A L + + S G
Sbjct: 5 SSGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus}
(A:1-50,A:110-145)
Length = 86
Score = 70.1 bits (172), Expect = 3e-13
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 58 SEGLIGIA-RDGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPF 116
EG+IG + +VE+N ETD +A+N FQ+L ++A
Sbjct: 2 REGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMM------------ 49
Query: 117 DHSGITVGDGIKQQIAITGECIKLRRSALLCVSEGV 152
+ + V + I+Q IA GE I +RR + +
Sbjct: 50 NDDKVKVKELIQQAIAKIGENIVVRRFCRFELGAMM 85
Score = 26.6 bits (59), Expect = 4.1
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 259 DPSKTVSDFLKESEKSIGASIEVVGVSHFVVG 290
D V + ++++ IG +I V F +G
Sbjct: 51 DDKVKVKELIQQAIAKIGENIVVRRFCRFELG 82
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT;
protein-protein complex, translation; HET: MSE; 2.20A
{Bos taurus} (B:1-45)
Length = 45
Score = 67.7 bits (166), Expect = 2e-12
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 2 SKVSAVAVKELRGKTGAGIMDCKNALLEAKGDSELAIDILRTKG 45
S S + +LR KTG ++CK AL GD + A L +
Sbjct: 1 SASSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQA 44
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus}
(A:51-109)
Length = 59
Score = 59.6 bits (145), Expect = 4e-10
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 200 PSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFV 257
P +S + + + +R Y+ AL+ GK I EKI G+++ + +E VLL Q FV
Sbjct: 1 PRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFV 58
>1aip_C EF-TS, elongation factor TS; nucleotide exchange,
GTP-binding, complex of two elongation factors; 3.00A
{Thermus thermophilus} (C:105-163)
Length = 59
Score = 59.6 bits (145), Expect = 4e-10
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 200 PSVISVQMLDPSIVANKRAHYMTEALDSGKSGNIVEKIVNGKMQSFCKECVLLHQGFV 257
P +S + + + +R Y+ AL+ GK I EKI G+++ + +E VLL Q FV
Sbjct: 1 PRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFV 58
>1pmh_X Cscbm27-1, beta-1,4-mannanase; jellyroll beta-sandwich,
hydrolase; HET: MAN BMA; 1.06A {Caldicellulosiruptor
saccharolyticus} (X:)
Length = 185
Score = 29.1 bits (65), Expect = 0.79
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 5/47 (10%)
Query: 67 DGYKKASIVEVNVETDSLAKNTDFQSLVSNIAGIALSTDGS--LDNV 111
Y + + LV AG + G LDNV
Sbjct: 135 KDYTV---IHKAFAIPEDFRTKKRAQLVFQFAGQNSNYKGPIYLDNV 178
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone,
translocation, protein folding, virulence, bacterial;
2.20A {Salmonella typhimurium} (C:)
Length = 240
Score = 28.4 bits (63), Expect = 1.1
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 171 LVALQSSAEDKELLSAIGEKIAVHVMLASPSVISVQMLDPSIVANKRAHYMTEALD---- 226
L A S E K LL +G + ++ S P + K+A E L+
Sbjct: 81 LNATSDSPEAKTLLMKVGAEYTAQIIKDGLKEKSA--FGPWLPETKKAEAKLENLEKQLL 138
Query: 227 -------SGKSGNIVEKIVNGKMQSFCKECVLLHQGFVVDP 260
G+ + +V ++ + C+ + G +DP
Sbjct: 139 DIIKNNTGGELSKLSTNLVMQEVMPYIASCIEHNFGCTLDP 179
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination,
helicase, hydrolase, DNA repair; HET: DNA; 3.1A
{Escherichia coli} (C:1-82,C:185-330)
Length = 228
Score = 26.8 bits (59), Expect = 3.3
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 182 ELLSAIGEKIAVHVMLASPS 201
+ L A+G+ I +H++ +P
Sbjct: 123 QALQALGKHIEIHLLFTNPC 142
>2zbi_A Flagellin homolog; flagellum, structural protein; 2.00A
{Sphingomonas SP} (A:1-113,A:232-292)
Length = 174
Score = 26.3 bits (58), Expect = 4.7
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 78 NVETDSLAKNTDFQSLVSNIAGIALSTDGSLDNVLAMPFDHSGITVGDGIKQQIAIT 134
N +TD A + L S I +A T + +L F+ +G + I ++
Sbjct: 50 NTQTDRDALQAEVTQLQSEIQRVAEQTSFNGQKLLDGSFNGVQFQIGANAGETIGVS 106
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA
synthetase class II, ligase; 3.23A {Methanococcus
maripaludis S2} (A:550-614)
Length = 65
Score = 25.9 bits (56), Expect = 6.1
Identities = 4/6 (66%), Positives = 5/6 (83%)
Query: 75 VEVNVE 80
VEV +E
Sbjct: 2 VEVKIE 7
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA
synthetase class II, ligase; 3.23A {Methanococcus
maripaludis S2} (B:550-611)
Length = 62
Score = 25.9 bits (56), Expect = 7.6
Identities = 4/6 (66%), Positives = 5/6 (83%)
Query: 75 VEVNVE 80
VEV +E
Sbjct: 2 VEVKIE 7
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin
associated domain, structural genomics, riken
structural genomics/proteomics initiative; NMR {Mus
musculus} (A:)
Length = 104
Score = 25.6 bits (56), Expect = 8.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 9 VKELRGKTGAGIMDCKNALLEAKGDSELAIDIL 41
VK+L TG +C AL + GD AI++L
Sbjct: 43 VKQLIDITGKNQDECVIALHDCNGDVNRAINVL 75
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.313 0.131 0.351
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,966,176
Number of extensions: 80121
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 25
Length of query: 296
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 208
Effective length of database: 1,981,209
Effective search space: 412091472
Effective search space used: 412091472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.6 bits)