HHsearch alignment for GI: 254780779 and conserved domain: CHL00067
>CHL00067 rps2 ribosomal protein S2.
Probab=100.00 E-value=0 Score=611.37 Aligned_cols=225 Identities=41% Similarity=0.689 Sum_probs=220.7
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 66245899986088607547765788562102001881675389999999999999998610788169960782357999
Q gi|254780779|r 3 LPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCV 82 (278)
Q Consensus 3 m~~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i 82 (278)
T Consensus 1 m~~i~i~~Ll~agvH~Gh~~~~wnp~m~~yIyg~rngihIIdL~kT~~~L~~A~~~i~~~~~~~g~ILfVgTk~~~~~~i 80 (227)
T CHL00067 1 MWNINLEEMLEAGVHFGHQTRKWNPKMAPYIYAKRKGIHIINLTQTARFLSEACDLVFDAASRGKKFLFVGTKKQAADLV 80 (227)
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 99788999997084058787837999600433155992798599999999999999999985499479997658789999
Q ss_pred HHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 9998633983142334587323426665556778998876-301212677467887665567776434433221135957
Q gi|254780779|r 83 MEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEEL-LNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDL 161 (278)
Q Consensus 83 ~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~-~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ 161 (278)
T Consensus 81 ~~~A~~~~~~yV~~rWlgG~LTN~~ti~k~i~~l~~l~~~~~~~~~~~~~KKe~~~~~~~~~kL~k~~~Gi~~m~~lPd~ 160 (227)
T CHL00067 81 ASAAIRARCHYVNKKWLGGMLTNWSTTKTRLKKLRDLRMEEKTGLFNRLPKKEAAILKRQLSRLQKYLGGIKYMTKLPDI 160 (227)
T ss_pred HHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999819971537642874447899977999999999976245231020789998888898999875315456208976
Q ss_pred EEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999438877123212343398145403677670011520321577268999999999999999999
Q gi|254780779|r 162 MFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIA 227 (278)
Q Consensus 162 iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~ 227 (278)
T Consensus 161 iii~d~~~e~~ai~Ea~kL~IPvIaivDTn~~p~~idypIP~NDds~~SI~li~~~l~~ai~~Gk~ 226 (227)
T CHL00067 161 VIIVDQQEEYTALRECIKLGIPTISIVDTNCDPDLADIPIPANDDAIASIRLILNKLVTAICEGRS 226 (227)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999677533799999987599989996389997757767537866699999999999999997533