HHsearch alignment for GI: 254780779 and conserved domain: COG0052
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=656.72 Aligned_cols=228 Identities=50% Similarity=0.858 Sum_probs=223.4
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Q ss_conf 66245899986088607547765788562102001881675389999999999999998610788169960782357999
Q gi|254780779|r 3 LPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCV 82 (278)
Q Consensus 3 m~~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i 82 (278)
T Consensus 1 m~~vsm~~lLeAGvHfGhqtr~wnpkm~~fIf~~RngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V 80 (252)
T COG0052 1 MAVVSMKQLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPV 80 (252)
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH
T ss_conf 98578999987385116542324876466500002771798799989999999999999972899799995208878999
Q ss_pred HHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99986339831423345873234266655567789988763012126774678876655677764344332211359579
Q gi|254780779|r 83 MEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLM 162 (278)
Q Consensus 83 ~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~i 162 (278)
T Consensus 81 ~~~A~r~g~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l 160 (252)
T COG0052 81 KEFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDGFDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVL 160 (252)
T ss_pred HHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEE
T ss_conf 99999959951327643742447405888999999999876414321007888877778999987401411126799989
Q ss_pred EEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99438877123212343398145403677670011520321577268999999999999999999744
Q gi|254780779|r 163 FVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQH 230 (278)
Q Consensus 163 iv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~ 230 (278)
T Consensus 161 ~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~~~~ 228 (252)
T COG0052 161 FVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGGAL 228 (252)
T ss_pred EEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99688176899999997599989984189997657655228870898999999999999998743654