HHsearch alignment for GI: 254780779 and conserved domain: PRK04020

>PRK04020 rps2P 30S ribosomal protein S2; Provisional.
Probab=100.00  E-value=0  Score=467.32  Aligned_cols=183  Identities=25%  Similarity=0.397  Sum_probs=167.0

Q ss_pred             CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf             2458999860886075477657885621020018-816753899999999999999986107881699607823579999
Q gi|254780779|r    5 QFTIRQLLESGVQFGHRNFLWNPKMERYIFCERN-NTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVM   83 (278)
Q Consensus         5 ~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rn-gihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~   83 (278)
T Consensus         9 lvsi~~ll~AgvHfG--t~~~np~M~~yIy~~R~~GihIIDL~kT~~~L~~A~~~l~~~--~~~~ILfVgtk~qa~~~v~   84 (204)
T PRK04020          9 LVPLEEYLAAGVHIG--TQQKTKDMEKFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRY--EPEKILVVSSRQYGQKPVK   84 (204)
T ss_pred             EEEHHHHHHCCEEEC--CCCCCCCCHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHH
T ss_conf             588999986095657--776998723221476899758973999999999999999960--7984999979899999999


Q ss_pred             HHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             99863398314233458732342666555677899887630121267746788766556777643443322113595799
Q gi|254780779|r   84 EAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMF  163 (278)
Q Consensus        84 ~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ii  163 (278)
T Consensus        85 ~~A~~~g~~yv~~RWlgG~LTN~~--------l~-----------~~------------------~--------ePdlli  119 (204)
T PRK04020         85 KFAEVVGAKAITGRFIPGTLTNPS--------LK-----------GY------------------I--------EPDVLV  119 (204)
T ss_pred             HHHHHHCCEEECCCCCCCCCCCHH--------HC-----------CC------------------C--------CCCEEE
T ss_conf             999996990682622798656831--------30-----------25------------------6--------899899


Q ss_pred             EECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9438877123212343398145403677670011520321577268999999999999999999744310111
Q gi|254780779|r  164 VVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGAD  236 (278)
Q Consensus       164 v~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~~~~~~  236 (278)
T Consensus       120 V~Dp~~e~~AV~EA~~l~IPvIaivDTn~dp~~Vdy~IP~NDds~~SI~Li~~lLa~ail~~kg~~~~~~~~~  192 (204)
T PRK04020        120 VTDPRGDAQAVKEAIEIGIPVVALCDTDNLTSNVDLVIPTNNKGRKALALIYWLLAREILRERGEIKPDEDLP  192 (204)
T ss_pred             EECCCCCHHHHHHHHHCCCCEEEEECCCCCCHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9788630489999987699989982799891115736516883073899999999999999739777666887