HHsearch alignment for GI: 254780779 and conserved domain: PRK12311
>PRK12311 rpsB 30S ribosomal protein S2; Provisional.
Probab=100.00 E-value=0 Score=694.31 Aligned_cols=246 Identities=61% Similarity=1.053 Sum_probs=238.5
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 98662458999860886075477657885621020018816753899999999999999986107881699607823579
Q gi|254780779|r 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASD 80 (278)
Q Consensus 1 m~m~~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~ 80 (278)
T Consensus 1 m~~p~~t~~~LLeAGvHfGHqt~rWNPkM~pYIyg~RngIHIIDL~qT~~~L~~A~~~v~~ia~~Gg~ILFVGTK~qa~~ 80 (332)
T PRK12311 1 MALPDFSMRQLLEAGVHFGHQSHRWNPKMAPYIFGARNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQD 80 (332)
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 99860369999971886788788559896230012408978986999999999999999999966997999868788999
Q ss_pred HHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999986339831423345873234266655567789988763-012126774678876655677764344332211359
Q gi|254780779|r 81 CVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELL-NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLP 159 (278)
Q Consensus 81 ~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~-~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP 159 (278)
T Consensus 81 ~V~~~A~r~~~~YVn~RWLGGtLTN~~TI~~sI~rL~~le~~~~~g~~~~ltKKE~l~l~Re~~KL~k~lgGIk~M~~lP 160 (332)
T PRK12311 81 AVADAAKRSAQYFVNSRWLGGTLTNWKTISGSIKRLRKLDEVLSSGDAGAYTKKERLTLQRERDKLDRSLGGIKDMGGLP 160 (332)
T ss_pred HHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998399657340027635559999999999999999861265233587889999879999998546254205599
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 57999438877123212343398145403677670011520321577268999999999999999999744310111101
Q gi|254780779|r 160 DLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGADTKS 239 (278)
Q Consensus 160 ~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~~~~~~~~~ 239 (278)
T Consensus 161 DlvfViD~~kE~iAV~EA~kLgIPvIaIvDTN~dP~~IdYpIPgNDDairsI~L~c~lia~A~l~G~~~~~~~~g~d~g~ 240 (332)
T PRK12311 161 DLIFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDPKGITYLVPGNDDAGRAIALYCDLIARAAIDGISRAQGDLGIDIGA 240 (332)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98999689733899999998097989997389998657756848655899999999999999999998752002667554
Q ss_pred CCCCCHH
Q ss_conf 1221001
Q gi|254780779|r 240 AGETVVH 246 (278)
Q Consensus 240 ~~~~~~~ 246 (278)
T Consensus 241 ~~~~~~~ 247 (332)
T PRK12311 241 SEAPLAE 247 (332)
T ss_pred CCCCCHH
T ss_conf 3467311