HHsearch alignment for GI: 254780779 and conserved domain: TIGR00113
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro: IPR003699 Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes . Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA -ribosyltransferase-isomerase, is required for the synthesis of the queuosine precursor (oQ). ; GO: 0003824 catalytic activity, 0008616 queuosine biosynthetic process.
Probab=92.09 E-value=0.15 Score=31.06 Aligned_cols=72 Identities=21% Similarity=0.358 Sum_probs=49.7
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH------------HHHHHHHHHHHCCCE-ECCCCC--CCCCCCC
Q ss_conf 6753899999999999999986107881699607823------------579999998633983-142334--5873234
Q gi|254780779|r 41 HIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQ------------ASDCVMEAAKRSAQY-CVNSKW--LGGMMTN 105 (278)
Q Consensus 41 hIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~------------~~~~i~~~A~~~~~~-yV~~RW--lGG~LTN 105 (278)
T Consensus 241 H~mH~E~~-~vp~~~~~~~~k~~~~G~Ri~aVGTTsvRslE~~a~~~~~~~~~~~~~~~~T~iFiYPG~~~~~Vd~LiTN 319 (364)
T TIGR00113 241 HVMHAEYL-EVPQETVEALEKTRESGGRIIAVGTTSVRSLESAAQEADEPRDLLEPFFGDTDIFIYPGYQFKVVDGLITN 319 (364)
T ss_pred CCCCCHHE-ECCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECCCCEEEEEEEEECC
T ss_conf 64200001-26878999999999709839998761477798887630477100201116743676067404534000206
Q ss_pred HHHHHHHH
Q ss_conf 26665556
Q gi|254780779|r 106 WKTVSQSI 113 (278)
Q Consensus 106 ~~ti~~si 113 (278)
T Consensus 320 FHLPkSsL 327 (364)
T TIGR00113 320 FHLPKSSL 327 (364)
T ss_pred CCCCHHHH
T ss_conf 62702679