HHsearch alignment for GI: 254780779 and conserved domain: cd06317
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.98 E-value=0.81 Score=26.26 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=24.1
Q ss_pred CCCCEEEEE--CCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEE
Q ss_conf 359579994--388771232123433981454036776700115203
Q gi|254780779|r 157 GLPDLMFVV--DTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVI 201 (278)
Q Consensus 157 ~lP~~iiv~--d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypI 201 (278)
T Consensus 55 ~~vd~Iii~p~d~~~~~~~i~~a~~agIpVv~-~d~~~~~~~~~~~~ 100 (275)
T cd06317 55 QKVDGIILWPTDGQAYIPGLRKAKQAGIPVVI-TNSNISEKGFEFIK 100 (275)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE-ECCCCCCCCCCEEE
T ss_conf 59999999678712457999999986994999-76888766775289