HHsearch alignment of GI: 254780779 and MMDB domain: 1nri_A_1-233
>1nri_A (A:1-233) Hypothetical protein HI0754; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Haemophilus influenzae}
Probab=96.88 E-value=0.041 Score=34.19 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCHH---HHHHHHHHHHHCCCEECCC-----------CCCCCCCCCHHHHHHHH
Q ss_conf 999999999999986107881699607823---5799999986339831423-----------34587323426665556
Q gi|254780779|r 48 TVPMLQKALQVISDTVARGGRILFVATKSQ---ASDCVMEAAKRSAQYCVNS-----------KWLGGMMTNWKTVSQSI 113 (278)
Q Consensus 48 T~~~L~~A~~~i~~i~~~gg~ILFVgTk~~---~~~~i~~~A~~~~~~yV~~-----------RWlGG~LTN~~ti~~si 113 (278)
+......++.-+.+...+.++|+++|.... +......+....+.+-... +|+|..-.=+...-...
T Consensus 53 ~~~~~~~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~ 132 (233)
T 1nri_A 53 CLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEXVKGIIAGGECAIRHPVEGAEDNTKAVLND 132 (233)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTTGGGCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHHHH
T ss_conf 89999999999999997399799981765699999999986486788821106877169878766544013548889999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CHHHHHHHHCCCEEEEECC
Q ss_conf 778998876301212677467887665567776434433221135957999438877----1232123433981454036
Q gi|254780779|r 114 QKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE----KLAIQEARRLRIPIVAVVD 189 (278)
Q Consensus 114 ~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e----~~Av~EA~kl~IPvIaivD 189 (278)
-.... -+--|++|++....+ .-+++.|++.|+|||+|.|
T Consensus 133 ---------------------------------~~~~~----~~~~dlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~ 175 (233)
T 1nri_A 133 ---------------------------------LQSIH----FSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIAS 175 (233)
T ss_dssp ---------------------------------HHHTT----CCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEES
T ss_pred ---------------------------------HHHHC----CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf ---------------------------------99834----89888489986899977789899998751662566634
Q ss_pred CCCCC--HHCCCEEEEC
Q ss_conf 77670--0115203215
Q gi|254780779|r 190 TNSNP--DLVDYVIPGN 204 (278)
Q Consensus 190 Tn~dp--~~idypIP~N 204 (278)
...+| ...|+.|+..
T Consensus 176 ~~~s~l~~~ad~~l~~~ 192 (233)
T 1nri_A 176 NPKSEXAEIADIAIETI 192 (233)
T ss_dssp STTCHHHHHSSEEEECC
T ss_pred CCCCHHHHHCCEEEECC
T ss_conf 88743568589888689