HHsearch alignment of GI: 254780779 and MMDB domain: 1vim_A_
>1vim_A (A:) Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus}
Probab=95.08 E-value=0.29 Score=28.70 Aligned_cols=109 Identities=8% Similarity=0.064 Sum_probs=66.6
Q ss_pred CHHHHHHHH-HHHHHHHHHHHCCCCEEEEEECCHHH--HHHHHHHHHHCCCEECCC-CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 389999999-99999999861078816996078235--799999986339831423-34587323426665556778998
Q gi|254780779|r 44 DLSQTVPML-QKALQVISDTVARGGRILFVATKSQA--SDCVMEAAKRSAQYCVNS-KWLGGMMTNWKTVSQSIQKLRDL 119 (278)
Q Consensus 44 dL~kT~~~L-~~A~~~i~~i~~~gg~ILFVgTk~~~--~~~i~~~A~~~~~~yV~~-RWlGG~LTN~~ti~~si~~l~~l 119 (278)
++++|...+ .....-+.+...+.++|.|+|+.... .........+.|-+.... ...-..
T Consensus 24 ~i~~~~~~i~~~~i~~i~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~----------------- 86 (200)
T 1vim_A 24 HIKNLRNHIDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPR----------------- 86 (200)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCC-----------------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCHHHHE-----------------
T ss_conf 999999855999999999999719958999316424342331012223332222232103300-----------------
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 876301212677467887665567776434433221135957999438877----1232123433981454036776700
Q gi|254780779|r 120 EELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNPD 195 (278)
Q Consensus 120 ~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp~ 195 (278)
+ ..-|++|++....+ ..+++.|+..|+|+|+|.|+..+|-
T Consensus 87 ----------~--------------------------~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l 130 (200)
T 1vim_A 87 ----------I--------------------------TDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSL 130 (200)
T ss_dssp ----------C--------------------------CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHH
T ss_pred ----------E--------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf ----------0--------------------------2566156512332202379999999862356436640355443
Q ss_pred --HCCCEEEECC
Q ss_conf --1152032157
Q gi|254780779|r 196 --LVDYVIPGND 205 (278)
Q Consensus 196 --~idypIP~ND 205 (278)
..|+.|+...
T Consensus 131 ~~~ad~~i~~~~ 142 (200)
T 1vim_A 131 AKMADVVMVVKG 142 (200)
T ss_dssp HHHCSEEEECCS
T ss_pred CCCCCEEEEECC
T ss_conf 233667999668