HHsearch alignment of GI: 254780779 and MMDB domain: 3bbn_B_
>3bbn_B (B:) Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=0 Score=560.51 Aligned_cols=226 Identities=38% Similarity=0.634 Sum_probs=221.2
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 24589998608860754776578856210200188167538999999999999999861078816996078235799999
Q gi|254780779|r 5 QFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVME 84 (278)
Q Consensus 5 ~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~ 84 (278)
++|+++||+||+||||++++|||+|+|||||.|||+|||||++|+.+|++|++|+++++++||+||||||+++++++|++
T Consensus 3 ~i~l~~ll~ag~HiGh~~~~wnp~m~~yI~g~rngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~i~~ 82 (231)
T 3bbn_B 3 NINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVAR 82 (231)
T ss_dssp SCSSHHHHHTSSSSCCCSSCCCGGGGGGEEEEETTEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHH
T ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
T ss_conf 88899999728736766673798862500055199278859999999999999999997078833898636766689999
Q ss_pred HHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 98633983142334587323426665556778998876-30121267746788766556777643443322113595799
Q gi|254780779|r 85 AAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEEL-LNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMF 163 (278)
Q Consensus 85 ~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~-~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ii 163 (278)
+|++||+|||++||+|||||||.|+++++.+|++++.+ .++.++.++|||.+.+.|++.||+++|+||++|.++||+||
T Consensus 83 ~a~~~~~~~v~~rWigG~LTN~~~i~~~i~~l~~l~~~~~~~~~~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~P~~ii 162 (231)
T 3bbn_B 83 AAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVI 162 (231)
T ss_dssp HHHHHTCEECCSSCCSCSSSCHHHHHHHHHHHHHHHHSTTSTTTTTSCHHHHHHHHHHHHHHTTSTTSTTSCCSCCSEEE
T ss_pred HHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEE
T ss_conf 99866980431452477546652002567779999877623761147789999888888887640224100111451689
Q ss_pred EECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9438877123212343398145403677670011520321577268999999999999999999744
Q gi|254780779|r 164 VVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQH 230 (278)
Q Consensus 164 v~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~ 230 (278)
|+||..|++||+||.+|||||||+|||||||+.|||||||||||++||.|+++.+++||++|++.+.
T Consensus 163 i~d~~~~~~ai~Ea~~l~IPvI~ivDTn~~p~~IdypIP~Ndds~~sI~li~~~l~~ai~~g~~~~~ 229 (231)
T 3bbn_B 163 IVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYI 229 (231)
T ss_dssp ESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEECCCCSSSHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred EECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8316621898998986699769987279997657677636886699999999999999999887762