Query gi|254780779|ref|YP_003065192.1| 30S ribosomal protein S2 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 278
No_of_seqs 150 out of 1435
Neff 5.3
Searched_HMMs 33803
Date Wed Jun 1 13:59:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780779.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3bbn_B Ribosomal protein S2; 100.0 0 0 560.5 18.9 226 5-230 3-229 (231)
2 >2vqe_B 30S ribosomal protein 100.0 0 0 563.4 13.3 235 3-237 1-237 (256)
3 >2zkq_b 40S ribosomal protein 100.0 0 0 487.9 13.8 187 1-235 8-195 (295)
4 >3bch_A 40S ribosomal protein 100.0 0 0 470.4 15.7 192 1-240 41-233 (253)
5 >1vi6_A 30S ribosomal protein 100.0 0 0 459.2 16.2 191 1-240 6-197 (208)
6 >3jyv_B 40S ribosomal protein 100.0 0 0 447.9 12.5 183 3-233 1-184 (193)
7 >3i1m_B 30S ribosomal protein 100.0 0 0 443.1 3.0 192 48-239 1-193 (196)
8 >1nri_A Hypothetical protein H 96.9 0.041 1.2E-06 34.2 13.0 120 48-204 53-192 (233)
9 >2yva_A DNAA initiator-associa 95.8 0.17 5.2E-06 30.2 13.8 147 49-227 24-187 (196)
10 >2i2w_A Phosphoheptose isomera 95.7 0.18 5.3E-06 30.1 11.2 145 52-224 50-208 (212)
11 >1tk9_A Phosphoheptose isomera 95.7 0.19 5.6E-06 29.9 13.8 136 48-211 24-169 (188)
12 >1vim_A Hypothetical protein A 95.1 0.29 8.7E-06 28.7 10.4 109 44-205 24-142 (200)
13 >3beo_A UDP-N-acetylglucosamin 94.6 0.11 3.2E-06 31.5 6.1 120 65-191 7-129 (211)
14 >1jeo_A MJ1247, hypothetical p 94.0 0.53 1.6E-05 27.1 13.1 109 44-204 17-133 (180)
15 >3knz_A Putative sugar binding 93.7 0.56 1.7E-05 26.9 8.2 47 159-205 65-117 (149)
16 >3c3j_A Putative tagatose-6-ph 93.5 0.65 1.9E-05 26.5 9.1 37 158-194 79-121 (168)
17 >3cvj_A Putative phosphoheptos 92.9 0.78 2.3E-05 25.9 11.2 69 159-227 109-212 (243)
18 >1m3s_A Hypothetical protein Y 92.8 0.82 2.4E-05 25.8 13.3 110 44-205 14-132 (186)
19 >3fkj_A Putative phosphosugar 92.4 0.91 2.7E-05 25.5 11.3 119 43-206 16-145 (173)
20 >2a3n_A Putative glucosamine-f 91.7 1.1 3.2E-05 25.0 12.4 136 42-224 29-176 (192)
21 >1x92_A APC5045, phosphoheptos 90.7 1.4 4E-05 24.4 13.2 150 43-225 18-193 (199)
22 >2uz1_A Benzaldehyde lyase; th 90.5 0.89 2.6E-05 25.6 6.1 131 51-216 12-150 (186)
23 >2o20_A Catabolite control pro 89.4 1.7 5.1E-05 23.7 7.5 96 56-190 6-114 (130)
24 >2fep_A Catabolite control pro 88.3 0.71 2.1E-05 26.2 4.3 58 157-217 71-131 (156)
25 >3k4h_A Putative transcription 88.2 1.3 3.8E-05 24.5 5.6 32 156-187 67-98 (160)
26 >3g1w_A Sugar ABC transporter; 87.5 0.79 2.4E-05 25.9 4.1 48 157-205 60-109 (171)
27 >1tzb_A Glucose-6-phosphate is 86.6 2.6 7.6E-05 22.6 7.8 55 159-213 64-125 (144)
28 >1tjy_A Sugar transport protei 86.6 1.4 4.1E-05 24.3 4.9 67 156-226 58-126 (165)
29 >3hcw_A Maltose operon transcr 86.6 1.3 3.9E-05 24.5 4.8 49 156-205 66-114 (163)
30 >1jqk_A CODH, carbon monoxide 86.5 2.6 7.7E-05 22.6 6.9 93 66-199 5-119 (147)
31 >1j5x_A Glucosamine-6-phosphat 86.0 2.5 7.3E-05 22.7 5.9 51 159-209 58-116 (139)
32 >3d8u_A PURR transcriptional r 85.7 1 3.1E-05 25.1 3.9 63 156-218 57-130 (154)
33 >1f0k_A MURG, UDP-N-acetylgluc 85.6 2.9 8.6E-05 22.3 6.7 51 158-208 96-153 (196)
34 >3eua_A Putative fructose-amin 85.5 2.9 8.6E-05 22.3 7.0 48 159-206 75-130 (155)
35 >2h0a_A TTHA0807, transcriptio 85.1 1.1 3.2E-05 25.0 3.8 46 156-204 53-98 (142)
36 >3h5t_A Transcriptional regula 84.9 1.3 3.9E-05 24.5 4.1 53 156-209 66-118 (160)
37 >3cf4_A Acetyl-COA decarbonyla 84.9 3.1 9.2E-05 22.1 7.8 97 64-201 16-134 (188)
38 >3cs3_A Sugar-binding transcri 84.8 1.4 4E-05 24.4 4.2 48 156-206 55-102 (147)
39 >1vgv_A UDP-N-acetylglucosamin 84.3 3.3 9.8E-05 21.9 8.6 44 140-188 73-117 (213)
40 >2q28_A Oxalyl-COA decarboxyla 83.9 3.4 0.0001 21.8 8.6 130 51-221 9-141 (177)
41 >2f00_A UDP-N-acetylmuramate-- 83.0 3.7 0.00011 21.6 6.5 91 64-188 2-94 (102)
42 >3gbv_A Putative LACI-family t 82.5 2.9 8.5E-05 22.3 5.0 64 156-222 67-132 (167)
43 >2fn9_A Ribose ABC transporter 81.7 4.1 0.00012 21.3 6.5 66 157-225 57-124 (150)
44 >3kke_A LACI family transcript 81.1 2.9 8.6E-05 22.3 4.7 33 156-188 69-101 (166)
45 >2bpl_A Glucosamine--fructose- 81.0 4.4 0.00013 21.1 13.5 105 57-211 6-125 (159)
46 >2zj3_A Glucosamine--fructose- 80.9 2.9 8.6E-05 22.3 4.6 45 159-203 108-158 (216)
47 >3h75_A Periplasmic sugar-bind 80.9 3 8.8E-05 22.2 4.6 52 157-209 61-113 (208)
48 >1p3d_A UDP-N-acetylmuramate-- 80.1 4.7 0.00014 20.9 6.1 91 64-188 16-108 (116)
49 >3hba_A Putative phosphosugar 80.0 3.8 0.00011 21.5 4.9 46 159-204 50-101 (106)
50 >3d02_A Putative LACI-type tra 79.3 3.5 0.0001 21.8 4.6 68 156-227 59-128 (154)
51 >1dbq_A Purine repressor; tran 79.0 3.1 9.1E-05 22.1 4.3 51 156-207 61-112 (157)
52 >3kjx_A Transcriptional regula 78.7 2.9 8.6E-05 22.3 4.0 37 157-193 63-99 (140)
53 >3egc_A Putative ribose operon 78.3 2.5 7.3E-05 22.7 3.6 46 157-205 63-108 (159)
54 >2c31_A Oxalyl-COA decarboxyla 78.3 5.3 0.00016 20.6 8.9 115 60-216 14-142 (179)
55 >3jy6_A Transcriptional regula 78.1 3 8.8E-05 22.2 3.9 30 157-187 62-91 (159)
56 >3fj1_A Putative phosphosugar 77.9 5.5 0.00016 20.5 14.1 47 159-205 92-144 (193)
57 >2fvy_A D-galactose-binding pe 77.9 0.85 2.5E-05 25.7 1.1 53 156-209 57-111 (164)
58 >3d02_A Putative LACI-type tra 77.8 4.6 0.00014 21.0 4.9 34 157-190 80-117 (149)
59 >1qpz_A PURA, protein (purine 77.7 4.5 0.00013 21.1 4.8 51 157-208 56-107 (151)
60 >3c3k_A Alanine racemase; stru 77.6 3.1 9.2E-05 22.1 3.9 63 156-220 62-125 (154)
61 >2h3h_A Sugar ABC transporter, 76.4 3.3 9.9E-05 21.9 3.8 61 156-224 55-117 (147)
62 >2o20_A Catabolite control pro 76.4 6 0.00018 20.2 5.4 46 157-205 118-163 (202)
63 >3eag_A UDP-N-acetylmuramate:L 76.3 6 0.00018 20.2 7.5 94 64-189 2-98 (105)
64 >3gv0_A Transcriptional regula 76.0 6.2 0.00018 20.2 7.9 61 157-225 65-125 (156)
65 >3kjx_A Transcriptional regula 75.6 5.9 0.00018 20.3 4.9 101 55-192 5-116 (132)
66 >3fxa_A SIS domain protein; YP 75.3 6.4 0.00019 20.0 14.4 47 158-204 92-144 (201)
67 >3e3m_A Transcriptional regula 74.7 6.7 0.0002 19.9 6.8 103 56-194 6-119 (134)
68 >2zj3_A Glucosamine--fructose- 74.4 6.8 0.0002 19.9 10.0 100 55-204 4-116 (159)
69 >3clk_A Transcription regulato 74.2 3.6 0.00011 21.7 3.5 38 156-194 63-100 (159)
70 >3brs_A Periplasmic binding pr 74.2 4.9 0.00015 20.8 4.2 48 156-204 63-112 (156)
71 >2poc_A D-fructose-6-, isomera 73.5 7.1 0.00021 19.8 9.8 107 55-211 5-126 (161)
72 >2vk2_A YTFQ, ABC transporter 73.3 2.1 6.3E-05 23.1 2.2 49 156-205 56-106 (134)
73 >2hsg_A Glucose-resistance amy 72.9 6.5 0.00019 20.0 4.6 35 156-190 56-90 (124)
74 >2rjo_A Twin-arginine transloc 72.6 7.5 0.00022 19.6 6.5 109 52-197 5-120 (135)
75 >3etn_A Putative phosphosugar 72.1 7.7 0.00023 19.5 7.3 44 159-202 107-158 (220)
76 >2rgy_A Transcriptional regula 72.0 5.6 0.00017 20.4 4.1 31 157-187 66-96 (132)
77 >2dri_A D-ribose-binding prote 71.6 7.9 0.00023 19.5 4.9 49 156-205 55-105 (139)
78 >2pan_A Glyoxylate carboligase 71.3 8 0.00024 19.4 7.5 136 51-222 11-152 (220)
79 >3l6u_A ABC-type sugar transpo 70.8 8.2 0.00024 19.4 5.9 53 157-212 63-117 (155)
80 >2w36_A Endonuclease V; hypoxa 70.7 7.5 0.00022 19.6 4.5 38 154-191 69-111 (195)
81 >3g85_A Transcriptional regula 69.7 2.7 8E-05 22.5 2.0 43 156-198 66-108 (155)
82 >1n2z_A Vitamin B12 transport 69.4 4.6 0.00014 21.0 3.2 29 159-187 58-86 (131)
83 >1moq_A Glucosamine 6-phosphat 69.0 8.9 0.00026 19.1 10.8 44 159-202 63-113 (158)
84 >3dbi_A Sugar-binding transcri 69.0 8.9 0.00026 19.1 6.9 99 55-190 6-117 (133)
85 >3brq_A HTH-type transcription 69.0 8.9 0.00026 19.1 6.4 99 55-190 6-117 (133)
86 >1j6u_A UDP-N-acetylmuramate-a 68.7 9.1 0.00027 19.1 6.2 92 63-188 9-102 (113)
87 >2rjo_A Twin-arginine transloc 68.5 6.1 0.00018 20.2 3.6 63 157-220 60-126 (152)
88 >3huu_A Transcription regulato 68.5 8.9 0.00026 19.1 4.5 47 156-205 81-127 (176)
89 >3hn7_A UDP-N-acetylmuramate-L 67.7 9.5 0.00028 19.0 6.9 95 62-188 15-111 (119)
90 >3e3m_A Transcriptional regula 66.9 9.9 0.00029 18.8 5.2 34 157-190 125-158 (221)
91 >3brs_A Periplasmic binding pr 66.4 10 0.0003 18.8 4.5 109 52-199 5-120 (133)
92 >2poc_A D-fructose-6-, isomera 65.6 10 0.00031 18.7 6.9 44 159-202 98-147 (206)
93 >1l7b_A DNA ligase; BRCT, auto 64.7 9.9 0.00029 18.8 4.1 42 143-186 27-70 (92)
94 >1wf6_A Similar to S.pombe -RA 64.5 11 0.00032 18.6 5.6 74 128-205 49-130 (132)
95 >2vpi_A GMP synthase; guanine 64.5 11 0.00032 18.5 6.4 76 64-188 22-103 (218)
96 >2ioy_A Periplasmic sugar-bind 63.5 10 0.00031 18.7 4.0 42 156-197 55-98 (150)
97 >3ksm_A ABC-type sugar transpo 63.3 12 0.00034 18.4 5.8 46 159-205 60-107 (140)
98 >3g68_A Putative phosphosugar 63.0 12 0.00034 18.4 13.2 47 159-205 83-137 (188)
99 >2aml_A SIS domain protein; 46 62.9 12 0.00035 18.4 6.5 46 159-204 72-124 (157)
100 >2etv_A Iron(III) ABC transpor 62.7 6.4 0.00019 20.0 2.8 34 159-193 97-130 (175)
101 >1kyq_A Met8P, siroheme biosyn 62.7 3.6 0.00011 21.7 1.5 105 64-206 11-115 (145)
102 >1cdz_A Protein (DNA-repair pr 62.5 12 0.00035 18.3 5.1 48 155-202 40-93 (96)
103 >3i09_A Periplasmic branched-c 62.5 12 0.00035 18.3 7.5 92 51-185 5-101 (191)
104 >2fqx_A Membrane lipoprotein T 61.4 12 0.00037 18.2 9.2 46 157-202 78-132 (137)
105 >1ozh_A ALS, acetolactate synt 61.0 13 0.00037 18.1 8.9 118 51-204 10-131 (180)
106 >3l3e_A DNA topoisomerase 2-bi 60.5 13 0.00038 18.1 5.7 61 144-204 36-105 (107)
107 >1ybh_A Acetolactate synthase, 59.7 13 0.00039 18.0 8.9 138 51-222 5-143 (174)
108 >3l49_A ABC sugar (ribose) tra 58.7 7.1 0.00021 19.7 2.5 34 157-190 60-95 (150)
109 >3hbf_A Flavonoid 3-O-glucosyl 58.6 14 0.00041 17.9 4.2 128 52-202 27-159 (270)
110 >1v4v_A UDP-N-acetylglucosamin 58.4 14 0.00041 17.9 4.1 45 139-188 77-122 (204)
111 >3lop_A Substrate binding peri 58.2 14 0.00042 17.8 7.9 99 54-195 9-113 (162)
112 >1gud_A ALBP, D-allose-binding 58.2 7.5 0.00022 19.6 2.5 49 156-205 57-107 (153)
113 >2qu7_A Putative transcription 57.6 14 0.00043 17.8 8.3 103 55-190 5-120 (136)
114 >1v5e_A Pyruvate oxidase; oxid 57.5 14 0.00043 17.8 9.3 133 51-219 12-149 (222)
115 >2c4n_A Protein NAGD; nucleoti 57.4 15 0.00043 17.8 4.0 113 40-196 5-123 (144)
116 >3i0z_A Putative tagatose-6-ph 57.4 10 0.0003 18.8 3.1 43 160-202 57-107 (119)
117 >3e61_A Putative transcription 56.8 6 0.00018 20.2 1.9 34 156-190 62-95 (120)
118 >2duw_A Putative COA-binding p 56.4 15 0.00045 17.7 5.0 95 62-197 9-110 (145)
119 >2r79_A Periplasmic binding pr 55.9 13 0.00037 18.1 3.4 35 151-187 54-88 (91)
120 >3gyb_A Transcriptional regula 55.3 16 0.00046 17.5 8.2 99 52-190 5-113 (129)
121 >3egc_A Putative ribose operon 55.0 16 0.00047 17.5 6.0 99 56-191 6-117 (132)
122 >2nrr_A Uvrabc system protein 55.0 8.1 0.00024 19.4 2.2 61 157-217 78-143 (159)
123 >2r7a_A Bacterial heme binding 53.5 17 0.0005 17.4 4.0 31 159-189 60-90 (91)
124 >1q6z_A BFD, BFDC, benzoylform 52.4 17 0.00052 17.2 7.1 130 51-214 16-152 (168)
125 >1c4k_A Protein (ornithine dec 51.2 7.9 0.00023 19.5 1.7 61 160-223 34-100 (108)
126 >2iks_A DNA-binding transcript 50.5 19 0.00055 17.1 5.6 49 157-206 75-124 (163)
127 >1qpz_A PURA, protein (purine 50.1 19 0.00056 17.0 8.1 99 55-190 5-116 (132)
128 >1dbq_A Purine repressor; tran 50.1 19 0.00056 17.0 8.0 99 55-190 5-116 (132)
129 >2h2w_A Homoserine O-succinylt 49.9 17 0.00051 17.3 3.3 30 63-92 44-73 (312)
130 >3g1w_A Sugar ABC transporter; 49.9 18 0.00054 17.1 3.4 41 159-199 80-121 (134)
131 >1efv_A Electron transfer flav 49.9 19 0.00056 17.0 6.7 101 64-204 12-117 (132)
132 >8abp_A L-arabinose-binding pr 49.3 20 0.00058 16.9 4.1 65 156-220 55-127 (138)
133 >1gpw_B Amidotransferase HISH; 49.1 20 0.00058 16.9 6.1 31 159-189 43-85 (201)
134 >2vbf_A Branched-chain alpha-k 48.5 20 0.00059 16.8 8.0 131 53-214 14-149 (163)
135 >3hut_A Putative branched-chai 48.1 20 0.0006 16.8 7.1 93 64-197 14-112 (119)
136 >1t15_A Breast cancer type 1 s 47.8 21 0.00061 16.8 6.6 50 158-207 38-97 (138)
137 >2nrt_A Uvrabc system protein 47.6 18 0.00053 17.2 3.1 54 156-209 82-140 (156)
138 >2h3h_A Sugar ABC transporter, 47.5 21 0.00061 16.8 6.2 47 51-97 4-56 (166)
139 >1yv9_A Hydrolase, haloacid de 47.4 7.9 0.00023 19.5 1.2 111 41-195 8-125 (154)
140 >3ff6_A Acetyl-COA carboxylase 47.3 9.9 0.00029 18.8 1.7 20 173-192 100-119 (207)
141 >2gza_A Type IV secretion syst 47.2 21 0.00062 16.7 5.1 154 46-222 12-179 (218)
142 >2iya_A OLEI, oleandomycin gly 46.9 21 0.00063 16.7 9.4 129 49-202 23-151 (262)
143 >2hqb_A Transcriptional activa 46.6 21 0.00063 16.7 9.3 90 64-192 15-106 (120)
144 >1rrv_A Glycosyltransferase GT 46.3 22 0.00064 16.6 7.1 124 51-203 13-140 (257)
145 >2a2l_A Unknown; structural ge 45.8 9.8 0.00029 18.9 1.5 48 172-222 23-71 (145)
146 >2h0a_A TTHA0807, transcriptio 45.8 22 0.00065 16.6 4.8 34 157-190 81-120 (134)
147 >2k6g_A Replication factor C s 44.5 23 0.00068 16.5 5.4 43 144-187 54-98 (109)
148 >1gud_A ALBP, D-allose-binding 44.3 23 0.00069 16.4 5.3 106 53-196 6-119 (135)
149 >1vrg_A Propionyl-COA carboxyl 43.8 9.6 0.00028 18.9 1.2 42 151-192 45-98 (230)
150 >2cly_C ATP synthase coupling 43.8 24 0.0007 16.4 4.3 50 113-163 13-64 (77)
151 >3h5o_A Transcriptional regula 43.5 24 0.00071 16.4 4.2 34 157-190 117-150 (207)
152 >3h5t_A Transcriptional regula 42.5 25 0.00073 16.3 4.9 34 157-190 93-132 (146)
153 >2ez9_A Pyruvate oxidase; TPP 42.4 25 0.00074 16.3 10.7 128 51-216 13-147 (229)
154 >3h5o_A Transcriptional regula 42.2 25 0.00074 16.2 7.7 101 52-190 5-113 (132)
155 >3gf3_A Glutaconyl-COA decarbo 42.2 13 0.00038 18.1 1.6 17 174-190 132-148 (281)
156 >2pq6_A UDP-glucuronosyl/UDP-g 42.1 25 0.00074 16.2 5.8 122 51-191 21-149 (276)
157 >3hww_A 2-succinyl-5-enolpyruv 41.9 25 0.00075 16.2 4.5 97 66-203 25-127 (148)
158 >3goc_A Endonuclease V; alpha- 41.7 25 0.00075 16.2 6.0 38 154-191 103-145 (237)
159 >2f9i_B Acetyl-coenzyme A carb 41.6 10 0.00031 18.7 1.1 43 150-192 52-106 (224)
160 >2rgy_A Transcriptional regula 41.5 26 0.00076 16.2 7.9 98 57-191 8-118 (133)
161 >1xny_A Pccase, propionyl-COA 41.4 11 0.00031 18.6 1.1 17 174-190 82-98 (252)
162 >2vk8_A Pyruvate decarboxylase 41.3 26 0.00076 16.1 10.2 138 53-221 13-155 (165)
163 >1pix_A Glutaconyl-COA decarbo 40.8 12 0.00037 18.2 1.4 18 173-190 71-88 (243)
164 >1byk_A Protein (trehalose ope 40.6 26 0.00078 16.1 3.8 35 156-192 56-90 (130)
165 >2gek_A Phosphatidylinositol m 40.2 27 0.00079 16.0 4.5 35 158-192 107-141 (237)
166 >2d8m_A DNA-repair protein XRC 39.9 27 0.0008 16.0 3.3 55 128-186 31-85 (129)
167 >1jvn_A Glutamine, bifunctiona 39.1 28 0.00082 15.9 6.4 30 159-188 45-86 (218)
168 >3ctp_A Periplasmic binding pr 38.3 29 0.00085 15.9 6.5 95 57-190 7-114 (130)
169 >2q8p_A Iron-regulated surface 38.3 16 0.00047 17.5 1.6 26 159-185 61-86 (87)
170 >2vch_A Hydroquinone glucosylt 38.2 29 0.00085 15.8 7.9 120 52-191 20-141 (276)
171 >3hs3_A Ribose operon represso 38.0 29 0.00086 15.8 4.1 87 55-183 4-97 (126)
172 >1vrg_A Propionyl-COA carboxyl 37.9 13 0.00038 18.1 1.1 18 173-190 81-98 (251)
173 >3l46_A Protein ECT2; alternat 37.9 29 0.00086 15.8 5.5 70 128-203 30-107 (112)
174 >1byk_A Protein (trehalose ope 37.9 29 0.00086 15.8 6.3 36 155-190 71-109 (125)
175 >2f9y_A Acetyl-COA carboxylase 37.1 14 0.0004 17.9 1.1 18 175-192 128-145 (261)
176 >1x0u_A Hypothetical methylmal 36.3 14 0.00042 17.8 1.1 38 155-192 51-100 (251)
177 >2bzr_A Propionyl-COA carboxyl 35.9 17 0.00049 17.4 1.4 17 174-190 80-96 (235)
178 >2f9i_A Acetyl-coenzyme A carb 35.5 15 0.00044 17.7 1.1 19 174-192 127-145 (263)
179 >1wdi_A Hypothetical protein T 34.9 32 0.00096 15.5 3.0 57 55-113 239-308 (345)
180 >2iks_A DNA-binding transcript 34.5 33 0.00097 15.5 3.9 93 56-184 6-102 (130)
181 >2gi4_A Possible phosphotyrosi 34.5 33 0.00097 15.5 5.3 56 157-212 80-135 (156)
182 >1qv9_A F420-dependent methyle 34.5 26 0.00077 16.1 2.2 33 158-190 64-100 (127)
183 >3ff6_A Acetyl-COA carboxylase 34.2 20 0.0006 16.8 1.6 42 151-192 63-116 (262)
184 >2cok_A Poly [ADP-ribose] poly 34.0 29 0.00086 15.8 2.4 19 168-186 58-76 (113)
185 >1gpm_A GMP synthetase, XMP am 33.9 34 0.001 15.4 6.5 76 64-188 5-86 (204)
186 >1i1q_B Anthranilate synthase 33.5 34 0.001 15.4 5.9 78 67-189 1-84 (192)
187 >2hoq_A Putative HAD-hydrolase 33.0 35 0.001 15.3 5.9 121 40-201 4-125 (158)
188 >3knz_A Putative sugar binding 32.6 35 0.001 15.3 4.1 65 151-215 61-128 (163)
189 >3gf3_A Glutaconyl-COA decarbo 31.9 21 0.00063 16.7 1.4 20 173-192 112-131 (245)
190 >3ga2_A Endonuclease V; alpha- 31.7 36 0.0011 15.2 4.3 38 153-190 77-119 (219)
191 >1xtz_A Ribose-5-phosphate iso 31.7 8.6 0.00025 19.2 -0.6 62 7-73 21-87 (88)
192 >1x0u_A Hypothetical methylmal 31.5 22 0.00064 16.6 1.4 21 172-192 115-135 (232)
193 >1xny_A Pccase, propionyl-COA 31.4 22 0.00064 16.6 1.4 20 173-192 116-135 (233)
194 >2gt1_A Lipopolysaccharide hep 31.3 37 0.0011 15.1 9.0 33 156-192 86-118 (161)
195 >3fj1_A Putative phosphosugar 31.1 37 0.0011 15.1 5.1 59 159-217 61-124 (151)
196 >3fvv_A Uncharacterized protei 31.0 37 0.0011 15.1 2.6 53 38-92 4-56 (156)
197 >2vxo_A GMP synthase [glutamin 30.8 38 0.0011 15.1 5.6 77 63-188 26-108 (217)
198 >3brq_A HTH-type transcription 30.8 38 0.0011 15.1 4.1 33 157-189 76-109 (144)
199 >2nte_A BARD-1, BRCA1-associat 30.8 38 0.0011 15.1 6.5 48 158-205 36-90 (120)
200 >3dbi_A Sugar-binding transcri 30.8 38 0.0011 15.1 5.9 44 157-201 118-162 (185)
201 >2bzr_A Propionyl-COA carboxyl 30.7 20 0.00059 16.9 1.1 10 96-105 65-74 (257)
202 >1on3_A Methylmalonyl-COA carb 30.7 18 0.00054 17.1 0.9 18 173-190 79-96 (229)
203 >2bpl_A Glucosamine--fructose- 30.6 38 0.0011 15.1 7.2 67 159-225 97-179 (206)
204 >2fi1_A Hydrolase, haloacid de 30.4 38 0.0011 15.0 5.7 35 159-196 87-121 (124)
205 >2wm8_A MDP-1, magnesium-depen 30.4 38 0.0011 15.0 4.6 100 53-195 45-145 (161)
206 >2qyf_B MAD2L1-binding protein 30.4 19 0.00056 17.0 0.9 57 133-191 78-144 (240)
207 >2e5f_A Hypothetical protein P 30.2 39 0.0011 15.0 12.0 112 47-207 1-121 (146)
208 >3lkb_A Probable branched-chai 30.1 39 0.0011 15.0 7.8 91 65-196 18-114 (172)
209 >1xww_A Low molecular weight p 30.1 39 0.0011 15.0 7.6 134 64-222 3-152 (157)
210 >1uj6_A Ribose 5-phosphate iso 30.0 6.9 0.0002 19.9 -1.4 58 7-73 18-79 (80)
211 >3gv0_A Transcriptional regula 29.9 39 0.0012 15.0 4.2 34 157-190 77-116 (132)
212 >1im5_A 180AA long hypothetica 29.9 39 0.0012 15.0 3.5 37 159-195 120-159 (180)
213 >3cs3_A Sugar-binding transcri 29.9 39 0.0012 15.0 7.3 98 58-194 8-115 (130)
214 >3l41_A BRCT-containing protei 29.8 39 0.0012 15.0 2.5 72 127-205 13-90 (140)
215 >2wem_A Glutaredoxin-related p 29.2 40 0.0012 14.9 4.4 51 52-102 38-90 (118)
216 >2cou_A ECT2 protein; BRCT dom 29.2 40 0.0012 14.9 2.8 74 128-205 21-100 (109)
217 >2ywj_A Glutamine amidotransfe 29.1 39 0.0012 15.0 2.4 31 159-189 38-76 (186)
218 >2egg_A AROE, shikimate 5-dehy 28.7 41 0.0012 14.8 6.6 34 64-97 2-36 (125)
219 >2wt8_A Microcephalin; cell cy 28.6 40 0.0012 14.9 2.4 43 144-186 32-74 (97)
220 >1ovm_A Indole-3-pyruvate deca 28.6 41 0.0012 14.8 9.1 141 46-221 13-158 (169)
221 >3k9c_A Transcriptional regula 28.6 41 0.0012 14.8 3.9 62 157-231 65-126 (159)
222 >2j3l_A Prolyl-tRNA synthetase 28.4 42 0.0012 14.8 5.4 91 6-104 21-115 (147)
223 >2d59_A Hypothetical protein P 28.3 20 0.0006 16.8 0.8 92 64-200 20-120 (144)
224 >2ywd_A Glutamine amidotransfe 28.2 41 0.0012 14.9 2.3 30 159-188 40-81 (191)
225 >3cax_A Uncharacterized protei 28.2 26 0.00078 16.1 1.4 34 159-192 1-34 (121)
226 >3gwf_A Cyclohexanone monooxyg 28.1 42 0.0012 14.8 3.1 44 63-108 23-66 (160)
227 >2yv2_A Succinyl-COA synthetas 27.7 43 0.0013 14.7 5.4 36 158-193 71-107 (129)
228 >1ko7_A HPR kinase/phosphatase 27.6 38 0.0011 15.1 2.1 31 157-187 80-110 (129)
229 >1q7r_A Predicted amidotransfe 27.6 43 0.0013 14.7 3.1 19 37-55 23-41 (219)
230 >2ebu_A Replication factor C s 27.3 43 0.0013 14.7 3.7 43 144-186 44-87 (112)
231 >1jx6_A LUXP protein; protein- 27.1 44 0.0013 14.7 6.3 102 51-190 4-113 (133)
232 >3irv_A Cysteine hydrolase; st 27.0 32 0.00094 15.6 1.6 48 159-211 139-189 (233)
233 >2e1z_A Propionate kinase; TDC 26.9 33 0.00098 15.4 1.7 33 172-204 137-175 (195)
234 >2wt9_A Nicotinamidase; hydrol 26.6 45 0.0013 14.6 2.3 35 159-193 167-204 (235)
235 >2f9y_B Acetyl-coenzyme A carb 26.5 24 0.0007 16.4 0.9 19 174-192 129-147 (249)
236 >1on3_A Methylmalonyl-COA carb 26.4 26 0.00078 16.1 1.1 10 96-105 63-72 (251)
237 >2ioy_A Periplasmic sugar-bind 26.2 45 0.0013 14.6 7.4 101 52-190 5-114 (133)
238 >3k8x_A Acetyl-COA carboxylase 25.7 32 0.00093 15.6 1.4 42 151-192 66-119 (255)
239 >2hig_A 6-phospho-1-fructokina 25.3 47 0.0014 14.5 3.7 56 159-224 163-224 (249)
240 >1o94_A Tmadh, trimethylamine 25.2 47 0.0014 14.4 5.9 131 63-233 13-162 (195)
241 >1in4_A RUVB, holliday junctio 24.8 48 0.0014 14.4 7.4 144 41-186 26-175 (179)
242 >1yt5_A Inorganic polyphosphat 24.1 49 0.0015 14.3 5.1 34 154-187 37-70 (78)
243 >2qed_A Hydroxyacylglutathione 24.0 50 0.0015 14.3 3.2 39 158-196 27-65 (97)
244 >1c8b_A Spore protease; novel 24.0 27 0.00079 16.1 0.8 44 158-206 151-220 (336)
245 >1jye_A Lactose operon repress 23.9 50 0.0015 14.3 3.6 47 157-203 117-167 (219)
246 >3gt7_A Sensor protein; struct 23.8 50 0.0015 14.3 6.8 87 62-196 3-96 (154)
247 >2vq7_A Flavin-containing mono 23.6 51 0.0015 14.2 4.0 36 62-97 22-57 (119)
248 >3l49_A ABC sugar (ribose) tra 23.2 52 0.0015 14.2 5.8 106 52-191 5-121 (141)
249 >3l83_A Glutamine amido transf 23.1 52 0.0015 14.2 3.1 16 173-188 74-89 (250)
250 >3bh0_A DNAB-like replicative 23.0 52 0.0015 14.2 7.0 38 46-87 31-68 (266)
251 >1wp9_A ATP-dependent RNA heli 23.0 52 0.0015 14.2 4.8 58 31-88 1-58 (168)
252 >1vco_A CTP synthetase; tetram 22.7 41 0.0012 14.9 1.5 31 158-188 75-111 (270)
253 >1iir_A Glycosyltransferase GT 22.6 53 0.0016 14.1 6.4 128 50-204 12-140 (254)
254 >1w4x_A Phenylacetone monooxyg 22.4 53 0.0016 14.1 3.6 44 63-106 24-70 (118)
255 >1u0t_A Inorganic polyphosphat 22.4 53 0.0016 14.1 3.8 33 155-187 72-105 (149)
256 >2dyj_A Ribosome-binding facto 22.4 54 0.0016 14.1 2.8 34 137-170 61-94 (95)
257 >2v4u_A CTP synthase 2; pyrimi 22.3 35 0.001 15.3 1.1 30 159-188 91-126 (289)
258 >2vdj_A Homoserine O-succinylt 22.3 54 0.0016 14.1 2.1 32 67-98 36-67 (301)
259 >3jy6_A Transcriptional regula 22.0 37 0.0011 15.1 1.2 35 157-191 74-111 (117)
260 >3jvd_A Transcriptional regula 21.9 55 0.0016 14.0 4.1 54 158-218 119-173 (205)
261 >1tjy_A Sugar transport protei 21.8 55 0.0016 14.0 6.0 31 157-187 81-114 (151)
262 >1pix_A Glutaconyl-COA decarbo 21.7 47 0.0014 14.5 1.6 15 188-202 180-195 (303)
263 >1f0x_A DLDH, D-lactate dehydr 21.6 49 0.0015 14.3 1.7 45 146-190 33-78 (103)
264 >3k9c_A Transcriptional regula 21.6 55 0.0016 14.0 6.8 109 53-202 6-125 (130)
265 >1yy3_A S-adenosylmethionine:t 21.6 55 0.0016 14.0 5.0 57 55-113 136-206 (243)
266 >1zrn_A L-2-haloacid dehalogen 21.5 56 0.0016 14.0 6.2 121 42-202 15-141 (160)
267 >2pjd_A Ribosomal RNA small su 21.4 56 0.0017 14.0 2.5 38 41-78 80-117 (153)
268 >1o97_D Electron transferring 21.1 57 0.0017 13.9 8.0 113 62-216 9-128 (132)
269 >2csu_A 457AA long hypothetica 21.0 38 0.0011 15.1 1.1 46 148-193 54-100 (126)
270 >3gyb_A Transcriptional regula 20.8 58 0.0017 13.9 4.3 43 157-204 59-101 (151)
271 >1mx3_A CTBP1, C-terminal bind 20.8 58 0.0017 13.9 2.0 35 155-189 80-116 (152)
272 >2zxr_A Single-stranded DNA sp 20.6 58 0.0017 13.9 8.1 100 51-191 9-113 (194)
273 >1vky_A S-adenosylmethionine:t 20.4 59 0.0017 13.8 3.6 59 46-113 143-213 (250)
274 >1y7l_A O-acetylserine sulfhyd 20.4 37 0.0011 15.1 0.9 40 159-198 23-64 (105)
275 >3gg9_A D-3-phosphoglycerate d 20.3 59 0.0017 13.8 1.9 60 155-228 66-134 (157)
276 >1xea_A Oxidoreductase, GFO/ID 20.2 59 0.0018 13.8 3.1 31 157-187 62-93 (184)
277 >3fpw_A HBPS, extracellular HA 20.2 49 0.0015 14.3 1.5 53 171-226 75-128 (192)
278 >1njr_A 32.1 kDa protein in AD 20.1 21 0.00062 16.7 -0.4 33 171-203 25-57 (64)
279 >3g85_A Transcriptional regula 20.0 60 0.0018 13.8 7.8 32 157-188 77-114 (134)
No 1
>>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (B:)
Probab=100.00 E-value=0 Score=560.51 Aligned_cols=226 Identities=38% Similarity=0.634 Sum_probs=221.2
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 24589998608860754776578856210200188167538999999999999999861078816996078235799999
Q gi|254780779|r 5 QFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVME 84 (278)
Q Consensus 5 ~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~ 84 (278)
++|+++||+||+||||++++|||+|+|||||.|||+|||||++|+.+|++|++|+++++++||+||||||+++++++|++
T Consensus 3 ~i~l~~ll~ag~HiGh~~~~wnp~m~~yI~g~rngi~IIdl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~i~~ 82 (231)
T 3bbn_B 3 NINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVAR 82 (231)
T ss_dssp SCSSHHHHHTSSSSCCCSSCCCGGGGGGEEEEETTEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHH
T ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
T ss_conf 88899999728736766673798862500055199278859999999999999999997078833898636766689999
Q ss_pred HHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 98633983142334587323426665556778998876-30121267746788766556777643443322113595799
Q gi|254780779|r 85 AAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEEL-LNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMF 163 (278)
Q Consensus 85 ~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~-~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ii 163 (278)
+|++||+|||++||+|||||||.|+++++.+|++++.+ .++.++.++|||.+.+.|++.||+++|+||++|.++||+||
T Consensus 83 ~a~~~~~~~v~~rWigG~LTN~~~i~~~i~~l~~l~~~~~~~~~~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~P~~ii 162 (231)
T 3bbn_B 83 AAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVI 162 (231)
T ss_dssp HHHHHTCEECCSSCCSCSSSCHHHHHHHHHHHHHHHHSTTSTTTTTSCHHHHHHHHHHHHHHTTSTTSTTSCCSCCSEEE
T ss_pred HHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEE
T ss_conf 99866980431452477546652002567779999877623761147789999888888887640224100111451689
Q ss_pred EECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9438877123212343398145403677670011520321577268999999999999999999744
Q gi|254780779|r 164 VVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQH 230 (278)
Q Consensus 164 v~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~ 230 (278)
|+||..|++||+||.+|||||||+|||||||+.|||||||||||++||.|+++.+++||++|++.+.
T Consensus 163 i~d~~~~~~ai~Ea~~l~IPvI~ivDTn~~p~~IdypIP~Ndds~~sI~li~~~l~~ai~~g~~~~~ 229 (231)
T 3bbn_B 163 IVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYI 229 (231)
T ss_dssp ESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEECCCCSSSHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred EECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8316621898998986699769987279997657677636886699999999999999999887762
No 2
>>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (B:)
Probab=100.00 E-value=0 Score=563.43 Aligned_cols=235 Identities=45% Similarity=0.762 Sum_probs=226.0
Q ss_pred CCC-CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 662-4589998608860754776578856210200188167538999999999999999861078816996078235799
Q gi|254780779|r 3 LPQ-FTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDC 81 (278)
Q Consensus 3 m~~-~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~ 81 (278)
||. +|+++||++|+||||++++|||+|+|||||.|||+|||||++|+.+|++||.|++.++.+||+||||||+++++++
T Consensus 1 ~~~~v~i~~ll~ag~HiGh~~~~~np~m~~yIyg~rn~~~Iinl~~T~~~L~~A~~~i~~~~~~~~~iLfV~Tk~~~~~~ 80 (256)
T 2vqe_B 1 MPVEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDI 80 (256)
T ss_dssp -----CCCSTTCSSTTCCCBSSSCCGGGSTTEEEEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTT
T ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 99747799998738756666674698873502356198379859999999999999998874147823676245377799
Q ss_pred HHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999986339831423345873234266655567789988763-0121267746788766556777643443322113595
Q gi|254780779|r 82 VMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELL-NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPD 160 (278)
Q Consensus 82 i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~-~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~ 160 (278)
|.++|.+||++|||+||+|||||||.|+++++.+|+.++... .+.++.++|||.+.+.|++.||+++||||++|.++||
T Consensus 81 v~~~a~~~~~~yvn~rWlgG~LTN~~~i~~~i~~l~~~~~~~~~~~~~~l~kke~~~~~r~~~kl~k~l~Gi~~~~~~Pd 160 (256)
T 2vqe_B 81 VRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPD 160 (256)
T ss_dssp TTTTTTSSSCCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTGGGCSSCCS
T ss_pred HHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999994996424654378434320111132104765432136742246588898778888899986300343430464
Q ss_pred EEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 79994388771232123433981454036776700115203215772689999999999999999997443101111
Q gi|254780779|r 161 LMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGADT 237 (278)
Q Consensus 161 ~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~~~~~~~ 237 (278)
+|||+||..|++||+||.+|||||||+|||||||++|||||||||||++||+|+|+++++||++|++.+......+.
T Consensus 161 ~iii~d~~~~~~ai~Ea~~l~IPvi~lvDTn~~p~~idypIP~Ndds~~si~li~~ll~~ai~~g~~~~~~~~~~~~ 237 (256)
T 2vqe_B 161 AIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYA 237 (256)
T ss_dssp EEEESCTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSCHHHHHHHHHHHHHHHHTTTSCCCCSCTTTT
T ss_pred EEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 69970677318999988852851899721358776566343258850879999999999999998521012363000
No 3
>>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (b:)
Probab=100.00 E-value=0 Score=487.91 Aligned_cols=187 Identities=20% Similarity=0.319 Sum_probs=177.5
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 9866245899986088607547765788562102001-881675389999999999999998610788169960782357
Q gi|254780779|r 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCER-NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQAS 79 (278)
Q Consensus 1 m~m~~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~r-ngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~ 79 (278)
|+|+.+++++||+||+||||++ |||+|++||||.| ||+|||||+||+.+|++|++||..+ .++|.|||||||++++
T Consensus 8 ~~~~~~~i~~ll~ag~H~G~~~--wnp~m~~yI~~~R~~gi~IidL~kT~~~l~~A~~~i~~i-~~~~~ilfV~tk~~~~ 84 (295)
T 2zkq_b 8 LQMKEEDVLKFLAAGTHLGGTN--LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAI-ENPADVSVISSRNTGQ 84 (295)
T ss_dssp -----CCHHHHHHHTTTBCCSC--CCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHS-SCGGGEEEEECSHHHH
T ss_pred CCCCHHHHHHHHHHCEECCCCC--CCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCHHHH
T ss_conf 0679999999998487317678--787751303160689748960999999999999999974-5898679997552688
Q ss_pred HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999986339831423345873234266655567789988763012126774678876655677764344332211359
Q gi|254780779|r 80 DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLP 159 (278)
Q Consensus 80 ~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP 159 (278)
++|+++|++||++||++||+|||||||+|+++ ++|
T Consensus 85 ~~i~~~a~~~g~~~v~~Rw~gG~lTN~~~~~~---------------------------------------------~~P 119 (295)
T 2zkq_b 85 RAVLKFAAATGATPIAGRFTPGTFTNQIQAAF---------------------------------------------REP 119 (295)
T ss_dssp HHHHHHHHHHCCEEEESSCCCC-CCCTTCSSC---------------------------------------------CCC
T ss_pred HHHHHHHHHCCCCEECCEECCCCCCCHHHHHC---------------------------------------------CCC
T ss_conf 99999999818934513404776663122202---------------------------------------------367
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5799943887712321234339814540367767001152032157726899999999999999999974431011
Q gi|254780779|r 160 DLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGA 235 (278)
Q Consensus 160 ~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~~~~~ 235 (278)
+++||+||..|++||+||.+|||||||||||||||++|||||||||||++||.|||++|+++|++|+..+......
T Consensus 120 ~~iiv~dp~~~~~ai~Ea~~l~IPvIai~DTn~~p~~idy~IP~Ndds~~sI~li~~lla~ail~~~~~~~~~~~~ 195 (295)
T 2zkq_b 120 RLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPW 195 (295)
T ss_dssp SEEEESCTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEEEESCSSCHHHHHHHHHHHHHHHHHCCSSSSCCCCC
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7027766663158899987549998998037898645776774777317789999999999999972885645653
No 4
>>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} (A:)
Probab=100.00 E-value=0 Score=470.44 Aligned_cols=192 Identities=20% Similarity=0.315 Sum_probs=179.4
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 9866245899986088607547765788562102001-881675389999999999999998610788169960782357
Q gi|254780779|r 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCER-NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQAS 79 (278)
Q Consensus 1 m~m~~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~r-ngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~ 79 (278)
|+|+.+++++||+||+||||++ |||+|+|||||.| ||+|||||++|+.+|++|++|++.+ .++|.||||||+++++
T Consensus 41 ~~~~~~~i~~Ll~ag~H~Gh~~--wnp~m~~yIyg~R~~gi~IidL~~T~~~L~~A~~~i~~i-~~~~~iLfV~tk~~~~ 117 (253)
T 3bch_A 41 LQMKEEDVLKFLAAGTHLGGTN--LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAI-ENPADVSVISSRNTGQ 117 (253)
T ss_dssp -CCCHHHHHHHHHHTTTBCCSC--CCGGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHTC-SSGGGEEEEECSHHHH
T ss_pred CCCCHHHHHHHHHHCEEECCCC--CCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCHHHH
T ss_conf 2578899999997286307677--796640403273789859966999999999999999984-2899689997547889
Q ss_pred HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999986339831423345873234266655567789988763012126774678876655677764344332211359
Q gi|254780779|r 80 DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLP 159 (278)
Q Consensus 80 ~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP 159 (278)
.+|+++|++||++||++||+|||||||.+++.+ .|
T Consensus 118 ~~I~~~a~~~~~~~v~~rWigG~LTN~~~~~~~---------------------------------------------~P 152 (253)
T 3bch_A 118 RAVLKFAAATGATPIAGRFTPGTFTNQIQAAFR---------------------------------------------EP 152 (253)
T ss_dssp HHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTC---------------------------------------------SC
T ss_pred HHHHHHHHHHCCCEECCCCCCCCCCCCHHHCCC---------------------------------------------CC
T ss_conf 999999998189213145568742652010344---------------------------------------------66
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 57999438877123212343398145403677670011520321577268999999999999999999744310111101
Q gi|254780779|r 160 DLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGADTKS 239 (278)
Q Consensus 160 ~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~~~~~~~~~ 239 (278)
+++||+||..+++||+||.++||||||||||||||++|||||||||||++||+|++++|++||++|++.+......+...
T Consensus 153 ~liii~d~~~~~~ai~Ea~kl~IPvI~ivDTn~~p~~idypIP~Ndds~~si~li~~ll~~ai~~g~~~~~~~~~~~~~~ 232 (253)
T 3bch_A 153 RLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMP 232 (253)
T ss_dssp SEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSSHHHHHHHHHHHHHHHHHHHTSSCSSSCCSSCG
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 60145556775077777765389889994478885558767868887465799999999999999717766345542364
Q ss_pred C
Q ss_conf 1
Q gi|254780779|r 240 A 240 (278)
Q Consensus 240 ~ 240 (278)
+
T Consensus 233 ~ 233 (253)
T 3bch_A 233 D 233 (253)
T ss_dssp G
T ss_pred C
T ss_conf 1
No 5
>>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} (A:)
Probab=100.00 E-value=0 Score=459.16 Aligned_cols=191 Identities=25% Similarity=0.329 Sum_probs=178.8
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 98662458999860886075477657885621020018-81675389999999999999998610788169960782357
Q gi|254780779|r 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERN-NTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQAS 79 (278)
Q Consensus 1 m~m~~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rn-gihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~ 79 (278)
|+|..+++++||+||+||||++ |||+|+|||||.|+ |+|||||++|+.+|++|++|+.. .++|+||||||+++++
T Consensus 6 ~~~~~~~i~~ll~a~~H~G~~~--~n~~m~~yI~g~R~~gi~IinL~kT~~~L~~A~~~i~~--~~~~~iLfV~t~~~~~ 81 (208)
T 1vi6_A 6 EYEYLVPPDDYLAAGVHIGTQI--KTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSR--YEPSKILLVAARQYAH 81 (208)
T ss_dssp CCCCSSCHHHHHHHTTTBCCSC--CCTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTT--SCGGGEEEEECSGGGH
T ss_pred CCCCCCCHHHHHHHCEEECCCC--CCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHH--HCCCCEEEEECCCCHH
T ss_conf 3431434999987193568785--87777221305068976996799999999999999975--1347557872253077
Q ss_pred HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999986339831423345873234266655567789988763012126774678876655677764344332211359
Q gi|254780779|r 80 DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLP 159 (278)
Q Consensus 80 ~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP 159 (278)
.+|+++|.+||++||++||+|||||||.+++++ .|
T Consensus 82 ~~i~~~a~~~~~~~v~~rw~gG~LTN~~~~~~~---------------------------------------------~P 116 (208)
T 1vi6_A 82 KPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYR---------------------------------------------EP 116 (208)
T ss_dssp HHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCC---------------------------------------------CC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH---------------------------------------------HC
T ss_conf 899999973599754564557765557775310---------------------------------------------13
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 57999438877123212343398145403677670011520321577268999999999999999999744310111101
Q gi|254780779|r 160 DLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGADTKS 239 (278)
Q Consensus 160 ~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~~~~~~~~~ 239 (278)
+++||+||..+++||+||.+||||+||+|||||||+.|||||||||||++||+|+|+++++||++|++.+.+....+...
T Consensus 117 ~liii~d~~~~~~ai~Ea~~l~IP~Ial~DTn~~p~~idypIP~Nd~s~~si~li~~~l~~ai~~~~~~~~~~~~~~~~~ 196 (208)
T 1vi6_A 117 EVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQDFTYSIEDFEA 196 (208)
T ss_dssp SEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHSC
T ss_pred EEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 27999767610789999986389736760367895358878979787288999999999999999808875556202567
Q ss_pred C
Q ss_conf 1
Q gi|254780779|r 240 A 240 (278)
Q Consensus 240 ~ 240 (278)
.
T Consensus 197 ~ 197 (208)
T 1vi6_A 197 E 197 (208)
T ss_dssp C
T ss_pred H
T ss_conf 7
No 6
>>3jyv_B 40S ribosomal protein S0(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_B (B:)
Probab=100.00 E-value=0 Score=447.94 Aligned_cols=183 Identities=25% Similarity=0.373 Sum_probs=173.6
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 662458999860886075477657885621020018-8167538999999999999999861078816996078235799
Q gi|254780779|r 3 LPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERN-NTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDC 81 (278)
Q Consensus 3 m~~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rn-gihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~ 81 (278)
|+.+++++||+||+||||++ |||+|+|||||.|+ |+|||||++|+.+|++|++|++.+ .++|+||||||+++++++
T Consensus 1 m~~~~i~~ll~ag~HlG~~~--~n~~m~~yIyg~R~~gi~IidL~~T~~~L~~A~~~i~~i-~~~~~il~v~t~~~~~~~ 77 (193)
T 3jyv_B 1 LTPEDAQLLLAANTHLGARN--VQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAI-PNPEDVVAISSRTFGQRA 77 (193)
T ss_dssp CCCTTTTTHHHHTSSCCCSC--CCTTTTTTEEEECTTSCEEECHHHHHHHHHHHHHHHTTS-CSGGGEEECBCSSHHHHH
T ss_pred CCHHHHHHHHHCCEECCCCC--CCCCCCCCEECCCCCCEEEEEHHHHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHH
T ss_conf 98799999997093517688--899862530066689858964999999999999998740-369708996277888999
Q ss_pred HHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99998633983142334587323426665556778998876301212677467887665567776434433221135957
Q gi|254780779|r 82 VMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDL 161 (278)
Q Consensus 82 i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ 161 (278)
|+++|++||++||++||+|||||||.++++ ++|++
T Consensus 78 v~k~a~~~~~~~v~~rw~~G~LTN~~~~~~---------------------------------------------~~P~~ 112 (193)
T 3jyv_B 78 VLKFAAHTGATPIAGRFTPGSFTNYITRSF---------------------------------------------KEPRL 112 (193)
T ss_dssp HHHHHHHHCCBCCBSCCCSCSSSCSSSTTC---------------------------------------------CCCSE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---------------------------------------------CCCCC
T ss_conf 999999829944565535754355331134---------------------------------------------34772
Q ss_pred EEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999438877123212343398145403677670011520321577268999999999999999999744310
Q gi|254780779|r 162 MFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYM 233 (278)
Q Consensus 162 iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~~~ 233 (278)
+||+||..+++||+||.++|||+||+|||||||+.|||||||||||++||+|+++++++||++|++.+....
T Consensus 113 iii~d~~~~~~ai~Ea~~l~IP~I~l~DTn~~p~~idypIP~Nd~s~~si~li~~~l~~ai~~~~~~~~~~~ 184 (193)
T 3jyv_B 113 VIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRT 184 (193)
T ss_dssp EECSCTTTSHHHHHHHHHTTCCEEEEECTTCCCSSCSEEEESCSSCTTHHHHHHHHHHHHHHHHHTCCCCSC
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 046523343088999975499879873489996457757607885487999999999999999817777768
No 7
>>3i1m_B 30S ribosomal protein S2; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 2qal_B* 1p87_B 2aw7_B 2avy_B 2i2u_B 2i2p_B* 2qan_B* 2qb9_B* 2qbb_B* 2qbd_B 2qbf_B ... (B:46-241)
Probab=100.00 E-value=0 Score=443.09 Aligned_cols=192 Identities=47% Similarity=0.780 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCC
Q ss_conf 999999999999986107881699607823579999998633983142334587323426665556778998876-3012
Q gi|254780779|r 48 TVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEEL-LNKE 126 (278)
Q Consensus 48 T~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~-~~~~ 126 (278)
|+.+|++||+||+.++++||+||||||+++++.+|+++|.+||+||||+||+|||||||.|+++++.+|++++++ ..+.
T Consensus 1 T~~~L~~A~~~i~~~~~~~g~iLfV~Tk~~~~~~i~~~a~~~~~~yvn~rWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~ 80 (196)
T 3i1m_B 1 TVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGT 80 (196)
T ss_dssp HTGGGHHHHHHHTTTTTTCCCCCEECCSTTSSTTTSSSSSSSSCCEECSCCCTTTTTTGGGTHHHHHHHHHHHTTSSSSS
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999877641799788873768888999999985298233203317854455465538988999887761475
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCC
Q ss_conf 12677467887665567776434433221135957999438877123212343398145403677670011520321577
Q gi|254780779|r 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDD 206 (278)
Q Consensus 127 ~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDd 206 (278)
++.|||||...+.|++.||+++|+||++|.++||+|||+||..|++||+||.+|||||||||||||||+.||||||||||
T Consensus 81 ~~~l~kke~~~~~k~~~kl~k~~~Gi~~m~~~P~~vii~d~~~~~~ai~Ea~~l~IPvI~ivDTn~~p~~idypIP~Ndd 160 (196)
T 3i1m_B 81 FDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDD 160 (196)
T ss_dssp SSSSCSSTTHHHHHHHHHHHTTCSSSTTCCSCCSSEEEEETGGGHHHHHHHHHHTCCEEEECCTTSCGGGCSBCCCSCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCC
T ss_conf 34563588888788999999862575555678754787436510899999997599767523677883358878868887
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 268999999999999999999744310111101
Q gi|254780779|r 207 SSRSIALFCDLVASAAIDGIARQHSYMGADTKS 239 (278)
Q Consensus 207 s~~si~l~~~~i~~ai~~g~~~~~~~~~~~~~~ 239 (278)
|++||+|+|+.+++||++|++.+......+...
T Consensus 161 s~~si~li~~~l~~ai~~g~~~~~~~~~~~~~~ 193 (196)
T 3i1m_B 161 AIRAVTLYLGAVAATVREGRSQDLASQAEESFV 193 (196)
T ss_dssp SSSTTHHHHHHHHHHHTCSCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 499999999999999999750331002320003
No 8
>>1nri_A Hypothetical protein HI0754; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Haemophilus influenzae} (A:1-233)
Probab=96.88 E-value=0.041 Score=34.19 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCHH---HHHHHHHHHHHCCCEECCC-----------CCCCCCCCCHHHHHHHH
Q ss_conf 999999999999986107881699607823---5799999986339831423-----------34587323426665556
Q gi|254780779|r 48 TVPMLQKALQVISDTVARGGRILFVATKSQ---ASDCVMEAAKRSAQYCVNS-----------KWLGGMMTNWKTVSQSI 113 (278)
Q Consensus 48 T~~~L~~A~~~i~~i~~~gg~ILFVgTk~~---~~~~i~~~A~~~~~~yV~~-----------RWlGG~LTN~~ti~~si 113 (278)
+......++.-+.+...+.++|+++|.... +......+....+.+-... +|+|..-.=+...-...
T Consensus 53 ~~~~~~~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~ 132 (233)
T 1nri_A 53 CLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEXVKGIIAGGECAIRHPVEGAEDNTKAVLND 132 (233)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTTGGGCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHHHH
T ss_conf 89999999999999997399799981765699999999986486788821106877169878766544013548889999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CHHHHHHHHCCCEEEEECC
Q ss_conf 778998876301212677467887665567776434433221135957999438877----1232123433981454036
Q gi|254780779|r 114 QKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE----KLAIQEARRLRIPIVAVVD 189 (278)
Q Consensus 114 ~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e----~~Av~EA~kl~IPvIaivD 189 (278)
-.... -+--|++|++....+ .-+++.|++.|+|||+|.|
T Consensus 133 ---------------------------------~~~~~----~~~~dlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~ 175 (233)
T 1nri_A 133 ---------------------------------LQSIH----FSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIAS 175 (233)
T ss_dssp ---------------------------------HHHTT----CCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEES
T ss_pred ---------------------------------HHHHC----CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf ---------------------------------99834----89888489986899977789899998751662566634
Q ss_pred CCCCC--HHCCCEEEEC
Q ss_conf 77670--0115203215
Q gi|254780779|r 190 TNSNP--DLVDYVIPGN 204 (278)
Q Consensus 190 Tn~dp--~~idypIP~N 204 (278)
...+| ...|+.|+..
T Consensus 176 ~~~s~l~~~ad~~l~~~ 192 (233)
T 1nri_A 176 NPKSEXAEIADIAIETI 192 (233)
T ss_dssp STTCHHHHHSSEEEECC
T ss_pred CCCCHHHHHCCEEEECC
T ss_conf 88743568589888689
No 9
>>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar binding protein, DNAA binding protein; 1.85A {Escherichia coli} (A:)
Probab=95.76 E-value=0.17 Score=30.16 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHH---HHHHHHHHHHCCCEECCC-----CCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999861078816996078235---799999986339831423-----345873234266655567789988
Q gi|254780779|r 49 VPMLQKALQVISDTVARGGRILFVATKSQA---SDCVMEAAKRSAQYCVNS-----KWLGGMMTNWKTVSQSIQKLRDLE 120 (278)
Q Consensus 49 ~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~---~~~i~~~A~~~~~~yV~~-----RWlGG~LTN~~ti~~si~~l~~l~ 120 (278)
...+.+.+.-+.+...+.++|.|+|..... ......+....+.+..-. .+-.+++++.....-.
T Consensus 24 ~~~~~~~~~~~~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------- 95 (196)
T 2yva_A 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLH-------- 95 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTG--------
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCHH--------
T ss_conf 999999999999999879979999788017768778989998874134333210344552001111353027--------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--
Q ss_conf 763012126774678876655677764344332211359579994388771----23212343398145403677670--
Q gi|254780779|r 121 ELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP-- 194 (278)
Q Consensus 121 ~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp-- 194 (278)
..-+.....+. -...|++|++....+. -+++.|+..|+|+|+|.+...+|
T Consensus 96 ----------~~~~~~~~~~~--------------~~~~dlvi~iS~sG~t~~~~~~~~~ak~~g~~~i~IT~~~~s~l~ 151 (196)
T 2yva_A 96 ----------DEVYAKQVRAL--------------GHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELA 151 (196)
T ss_dssp ----------GGHHHHHHHHH--------------CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHH
T ss_pred ----------HHHHHHHHHHH--------------CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHH
T ss_conf ----------78899999986--------------278847999844775202568999999734818999825884577
Q ss_pred HHCCCE--EEECC-CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 011520--32157-7268999999999999999999
Q gi|254780779|r 195 DLVDYV--IPGND-DSSRSIALFCDLVASAAIDGIA 227 (278)
Q Consensus 195 ~~idyp--IP~ND-ds~~si~l~~~~i~~ai~~g~~ 227 (278)
...|+. +|+.+ .+.-+-....-.+.+.+.....
T Consensus 152 ~~sd~~l~~~~~~~~~~~~s~~~~~~~~~~L~~~~~ 187 (196)
T 2yva_A 152 GLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLID 187 (196)
T ss_dssp TTCCTTSEEEECSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 624658889994899809999999999999999999
No 10
>>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A (A:)
Probab=95.74 E-value=0.18 Score=30.09 Aligned_cols=145 Identities=13% Similarity=0.130 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHH---HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999861078816996078235---79999998633983142334587323426665556778998876301212
Q gi|254780779|r 52 LQKALQVISDTVARGGRILFVATKSQA---SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQ 128 (278)
Q Consensus 52 L~~A~~~i~~i~~~gg~ILFVgTk~~~---~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~ 128 (278)
+.++...+.+...+.++|.|+|..... ......+.......+....++.|..+= +...+.- +...+
T Consensus 50 ~~~~~~~i~~~i~~a~rI~~~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~l~~~~---~~~~~~~--------~~~~~ 118 (212)
T 2i2w_A 50 IQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVS---HISCVGN--------DFGFN 118 (212)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHHHHCTTSSSCSEEECCCTT---CGGGGSC--------CCSCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHEECCCCCH---HHHHHHC--------CCCHH
T ss_conf 999999999999869989998488632679899998628853346521201057702---5667642--------55578
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHCCCEEE
Q ss_conf 6774678876655677764344332211359579994388771----23212343398145403677670--01152032
Q gi|254780779|r 129 GFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLVDYVIP 202 (278)
Q Consensus 129 ~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~idypIP 202 (278)
.. ...... ..-+..|++|++....+. .+++.|+..|+|+|+|.|...+| ...|+.|.
T Consensus 119 ~~---~~~~~~--------------~~~~~~dv~i~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~ 181 (212)
T 2i2w_A 119 DI---FSRYVE--------------AVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIR 181 (212)
T ss_dssp SH---HHHHHH--------------HHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEE
T ss_pred HH---HHHHHH--------------HHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCEEEE
T ss_conf 89---888888--------------6167786799970685200224689999987996999957998605562999998
Q ss_pred EC--CCCHHHH---HHHHHHHHHHHHH
Q ss_conf 15--7726899---9999999999999
Q gi|254780779|r 203 GN--DDSSRSI---ALFCDLVASAAID 224 (278)
Q Consensus 203 ~N--Dds~~si---~l~~~~i~~ai~~ 224 (278)
.. .....|. .+++..+..++..
T Consensus 182 v~~~~~~~~s~t~~~~~~~~l~~~l~~ 208 (212)
T 2i2w_A 182 VPHFGYADRIQEIHIKVIHILIQLIEK 208 (212)
T ss_dssp ECCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 699985499999999999999999999
No 11
>>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} (A:)
Probab=95.67 E-value=0.19 Score=29.94 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCHHH--HHHHHHHHHHCCCEECCCCC--CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999861078816996078235--79999998633983142334--5873234266655567789988763
Q gi|254780779|r 48 TVPMLQKALQVISDTVARGGRILFVATKSQA--SDCVMEAAKRSAQYCVNSKW--LGGMMTNWKTVSQSIQKLRDLEELL 123 (278)
Q Consensus 48 T~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~--~~~i~~~A~~~~~~yV~~RW--lGG~LTN~~ti~~si~~l~~l~~~~ 123 (278)
.+..+..++.-+.+...++++|.|+|..... .........+.+ .+.+- .+.+++.-..+...+..-.
T Consensus 24 ~~~~~~~~~~~~~~~i~~~~rI~~~G~G~S~~~a~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------ 94 (188)
T 1tk9_A 24 LKGQIAKVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRY---KKERKALAGIALTTDTSALSAIGNDY------ 94 (188)
T ss_dssp GHHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCS---SSCCCCCCEEESSCCHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEHHHHCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCC------
T ss_conf 199999999999999985998999916887434433143406876---55544332225678744332122557------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHC
Q ss_conf 012126774678876655677764344332211359579994388771----23212343398145403677670--011
Q gi|254780779|r 124 NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLV 197 (278)
Q Consensus 124 ~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~i 197 (278)
. +..-....... .-.-.|++|++....+. -+++.|++.|+|+|+|.+....| ...
T Consensus 95 --~---~~~~~~~~~~~--------------~~~~~dlvI~~S~sG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~l~~~a 155 (188)
T 1tk9_A 95 --G---FEFVFSRQVEA--------------LGNEKDVLIGISTSGKSPNVLEALKKAKELNXLCLGLSGKGGGXXNKLC 155 (188)
T ss_dssp --C---GGGHHHHHHHH--------------HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHC
T ss_pred --C---HHHHHHHHHHH--------------HCCCCCEEEEEECCCCCCCHHHHHHHHHHEEEEEEEECCCCCHHHHHHC
T ss_conf --9---99999999998--------------3799998999818988831576567777424148998378852679859
Q ss_pred CCEEEECCCCHHHH
Q ss_conf 52032157726899
Q gi|254780779|r 198 DYVIPGNDDSSRSI 211 (278)
Q Consensus 198 dypIP~NDds~~si 211 (278)
||.|+...+.-.+.
T Consensus 156 d~~i~~~~~~e~~~ 169 (188)
T 1tk9_A 156 DHNLVVPSDDTARI 169 (188)
T ss_dssp SEEEEESCSCHHHH
T ss_pred CEEEEECCCCCHHH
T ss_conf 99999799995999
No 12
>>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} (A:)
Probab=95.08 E-value=0.29 Score=28.70 Aligned_cols=109 Identities=8% Similarity=0.064 Sum_probs=66.6
Q ss_pred CHHHHHHHH-HHHHHHHHHHHCCCCEEEEEECCHHH--HHHHHHHHHHCCCEECCC-CCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 389999999-99999999861078816996078235--799999986339831423-34587323426665556778998
Q gi|254780779|r 44 DLSQTVPML-QKALQVISDTVARGGRILFVATKSQA--SDCVMEAAKRSAQYCVNS-KWLGGMMTNWKTVSQSIQKLRDL 119 (278)
Q Consensus 44 dL~kT~~~L-~~A~~~i~~i~~~gg~ILFVgTk~~~--~~~i~~~A~~~~~~yV~~-RWlGG~LTN~~ti~~si~~l~~l 119 (278)
++++|...+ .....-+.+...+.++|.|+|+.... .........+.|-+.... ...-..
T Consensus 24 ~i~~~~~~i~~~~i~~i~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~----------------- 86 (200)
T 1vim_A 24 HIKNLRNHIDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPR----------------- 86 (200)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCC-----------------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCHHHHE-----------------
T ss_conf 999999855999999999999719958999316424342331012223332222232103300-----------------
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 876301212677467887665567776434433221135957999438877----1232123433981454036776700
Q gi|254780779|r 120 EELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNPD 195 (278)
Q Consensus 120 ~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp~ 195 (278)
+ ..-|++|++....+ ..+++.|+..|+|+|+|.|+..+|-
T Consensus 87 ----------~--------------------------~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l 130 (200)
T 1vim_A 87 ----------I--------------------------TDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSL 130 (200)
T ss_dssp ----------C--------------------------CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHH
T ss_pred ----------E--------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf ----------0--------------------------2566156512332202379999999862356436640355443
Q ss_pred --HCCCEEEECC
Q ss_conf --1152032157
Q gi|254780779|r 196 --LVDYVIPGND 205 (278)
Q Consensus 196 --~idypIP~ND 205 (278)
..|+.|+...
T Consensus 131 ~~~ad~~i~~~~ 142 (200)
T 1vim_A 131 AKMADVVMVVKG 142 (200)
T ss_dssp HHHCSEEEECCS
T ss_pred CCCCCEEEEECC
T ss_conf 233667999668
No 13
>>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A (A:1-192,A:357-375)
Probab=94.59 E-value=0.11 Score=31.50 Aligned_cols=120 Identities=10% Similarity=-0.012 Sum_probs=54.9
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCC-CCHHHHHHHHHHH
Q ss_conf 78816996078235799999986339831423345873234266655567789988763012-126-7746788766556
Q gi|254780779|r 65 RGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKE-NQG-FTKKERLNIERKR 142 (278)
Q Consensus 65 ~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~-~~~-~tkKe~~~~~r~~ 142 (278)
+..+|||++............+..+........|+..+.++....-.. .+.......... +.. ..........+-.
T Consensus 7 ~~~kIli~ags~g~~~~~~~li~~L~~~~~~~~~lv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 3beo_A 7 ERLKVMTIFGTRPEAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQ--VLSIFGITPDFDLNIMKDRQTLIDITTRGL 84 (211)
T ss_dssp SCEEEEEEECSHHHHHHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHH--HHHHHTCCCSEECCCCCTTCCHHHHHHHHH
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHH--HHHHCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 685699999726729999999999983878988899991687899999--999719998811105889977999999999
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHCCCEEEEECCCC
Q ss_conf 777643443322113595799943887-7123212343398145403677
Q gi|254780779|r 143 DKLKRALDGIRDMGGLPDLMFVVDTNR-EKLAIQEARRLRIPIVAVVDTN 191 (278)
Q Consensus 143 ~kl~k~lgGi~~m~~lP~~iiv~d~~~-e~~Av~EA~kl~IPvIaivDTn 191 (278)
.++.+.+.-. .||+|++.+... ...+..-|+++|||++-+--+.
T Consensus 85 ~~~~~~l~~~-----kPD~V~v~~~~~~~l~~~laA~~~~IPvv~~~~~~ 129 (211)
T 3beo_A 85 EGLDKVMKEA-----KPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGL 129 (211)
T ss_dssp HHHHHHHHHH-----CCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred HHHHHHHHHC-----CCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCC
T ss_conf 9889988744-----75504420145642015888873063179985245
No 14
>>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} (A:)
Probab=93.97 E-value=0.53 Score=27.06 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=62.2
Q ss_pred CHHHHHHHHH-HHHHHHHHHHCCCCEEEEEECCHHHH--HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3899999999-99999998610788169960782357--99999986339831423345873234266655567789988
Q gi|254780779|r 44 DLSQTVPMLQ-KALQVISDTVARGGRILFVATKSQAS--DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLE 120 (278)
Q Consensus 44 dL~kT~~~L~-~A~~~i~~i~~~gg~ILFVgTk~~~~--~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~ 120 (278)
.+++|...+. ....-+.+...+.++|.|+|...... ......-.+.|.+-.... +....
T Consensus 17 ~i~~~~~~~~~~~~~~~~~~l~~a~~i~i~g~G~S~~~a~~~~~~l~~~g~~~~~~~--~~~~~---------------- 78 (180)
T 1jeo_A 17 LKKFYTNDEWKNKLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVG--ETTTP---------------- 78 (180)
T ss_dssp GGHHHHCHHHHHHHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETT--STTCC----------------
T ss_pred HHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEC--CCCCC----------------
T ss_conf 999872428899999999999789939999778899999999999997797237521--23246----------------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCCH-
Q ss_conf 763012126774678876655677764344332211359579994388771----232123433981454036776700-
Q gi|254780779|r 121 ELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNPD- 195 (278)
Q Consensus 121 ~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp~- 195 (278)
.+ .-.|++|++....+. -++++|++.|+|||+|.+.++...
T Consensus 79 --------~~--------------------------~~~d~vi~iS~sG~~~~~~~~~~~ak~~g~~vI~iT~~~s~l~~ 124 (180)
T 1jeo_A 79 --------SY--------------------------EKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVXEXGNVVE 124 (180)
T ss_dssp --------CC--------------------------CTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCGGGG
T ss_pred --------CC--------------------------CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf --------78--------------------------98888999769998089999999999759979999699997566
Q ss_pred HCCCEEEEC
Q ss_conf 115203215
Q gi|254780779|r 196 LVDYVIPGN 204 (278)
Q Consensus 196 ~idypIP~N 204 (278)
..|+.++..
T Consensus 125 ~ad~~l~~~ 133 (180)
T 1jeo_A 125 FADLTIPLE 133 (180)
T ss_dssp GCSEEEECC
T ss_pred HCCEEEECC
T ss_conf 677888636
No 15
>>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp} (A:34-182)
Probab=93.66 E-value=0.56 Score=26.89 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=34.4
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEECC
Q ss_conf 957999438877----123212343398145403677670--01152032157
Q gi|254780779|r 159 PDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPGND 205 (278)
Q Consensus 159 P~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~ND 205 (278)
.|++|++....+ ..+++.|++.|+|+|+|.|...+| ...|+.++...
T Consensus 65 ~dlvI~iS~sg~t~~~~~~~~~ak~~g~~~i~iT~~~~s~l~~~ad~~i~~~~ 117 (149)
T 3knz_A 65 KALVVGISQGGGSLSTLAAXERARNVGHITASXAGVAPATIDRAADYILTVPC 117 (149)
T ss_dssp SEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSSSCGGGGGCSEECCCCC
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHCCCC
T ss_conf 81899993893888999999876652022025788786276630450011443
No 16
>>3c3j_A Putative tagatose-6-phosphate ketose/aldose isomerase; structural genomics, PSI, MCSG, protein structure initiative; 1.80A {Escherichia coli K12} (A:25-192)
Probab=93.45 E-value=0.65 Score=26.48 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=28.5
Q ss_pred CCCEEEEECCCCCCH----HHHHHHHCC--CEEEEECCCCCCC
Q ss_conf 595799943887712----321234339--8145403677670
Q gi|254780779|r 158 LPDLMFVVDTNREKL----AIQEARRLR--IPIVAVVDTNSNP 194 (278)
Q Consensus 158 lP~~iiv~d~~~e~~----Av~EA~kl~--IPvIaivDTn~dp 194 (278)
-.|++|++....+.. +++.|++.| +|+|++.+...+|
T Consensus 79 ~~dlvI~iS~sG~t~~~~~~~~~ak~~g~~~~~i~it~~~~s~ 121 (168)
T 3c3j_A 79 HPLLLISFGRSGNSPESVAAVELANQFVPECYHLPITCNEAGA 121 (168)
T ss_dssp SCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 8859999847989657999999999809981499974577885
No 17
>>3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} (A:)
Probab=92.89 E-value=0.78 Score=25.94 Aligned_cols=69 Identities=10% Similarity=0.218 Sum_probs=43.4
Q ss_pred CCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC-------------HHCCCEEEEC--C--------------
Q ss_conf 9579994388771----23212343398145403677670-------------0115203215--7--------------
Q gi|254780779|r 159 PDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP-------------DLVDYVIPGN--D-------------- 205 (278)
Q Consensus 159 P~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp-------------~~idypIP~N--D-------------- 205 (278)
.|++|++....+. -|++.|++.|+|||+|.+.-.+| ...|+.+... +
T Consensus 109 ~dlvI~iS~sG~t~~~i~a~~~ak~~G~~vI~iT~~~~S~l~~~~~~~~~~~a~~aD~~l~~~~~~e~~~~~~~~~~~~~ 188 (243)
T 3cvj_A 109 KDVIXIISNSGRNTVPVEXAIESRNIGAKVIAXTSXKHSQKVTSRHKSGKKLYEYADVVLDNGAPVGDAGFQIANSEIYS 188 (243)
T ss_dssp TCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEECCCCTTSCCEECSSSSCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCEEEECCCCCCCCEEECCCCCCCC
T ss_conf 99899977899989999999999986997999956888744221244334357748757765877643200024677676
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf --7268999999999999999999
Q gi|254780779|r 206 --DSSRSIALFCDLVASAAIDGIA 227 (278)
Q Consensus 206 --ds~~si~l~~~~i~~ai~~g~~ 227 (278)
.|.-|.-++...+.-.+.+-..
T Consensus 189 ~~~s~~s~~~~~~~l~~~~~~~~~ 212 (243)
T 3cvj_A 189 GATSDSIGCFLAQALIVETLHLLV 212 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 528899999999999999999999
No 18
>>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:)
Probab=92.76 E-value=0.82 Score=25.83 Aligned_cols=110 Identities=10% Similarity=0.049 Sum_probs=62.2
Q ss_pred CHHHHHHHH-HHHHHHHHHHHCCCCEEEEEECCHHH--HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 389999999-99999999861078816996078235--799999986339831423345873234266655567789988
Q gi|254780779|r 44 DLSQTVPML-QKALQVISDTVARGGRILFVATKSQA--SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLE 120 (278)
Q Consensus 44 dL~kT~~~L-~~A~~~i~~i~~~gg~ILFVgTk~~~--~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~ 120 (278)
.+++|...+ .....-+.+...+.++|.|+|..... .......-.+.|.+-+...=....
T Consensus 14 ~l~~t~~~~~~~~~~~i~~~i~~a~~I~~~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~------------------ 75 (186)
T 1m3s_A 14 ELHNSAAYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTP------------------ 75 (186)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCC------------------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHCC------------------
T ss_conf 99999986599999999999974995999978789999999999998509986777721135------------------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--
Q ss_conf 76301212677467887665567776434433221135957999438877----123212343398145403677670--
Q gi|254780779|r 121 ELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP-- 194 (278)
Q Consensus 121 ~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp-- 194 (278)
+...-|++|++....+ ..+++.|+..|+|+|+|.+...+|
T Consensus 76 ----------------------------------~~~~~~~vI~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~l~ 121 (186)
T 1m3s_A 76 ----------------------------------PLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIG 121 (186)
T ss_dssp ----------------------------------CCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHH
T ss_pred ----------------------------------CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf ----------------------------------6889988999818998646789999999869969999899999789
Q ss_pred HHCCCEEEECC
Q ss_conf 01152032157
Q gi|254780779|r 195 DLVDYVIPGND 205 (278)
Q Consensus 195 ~~idypIP~ND 205 (278)
...|+.++...
T Consensus 122 ~~ad~~l~~~~ 132 (186)
T 1m3s_A 122 KQADLIIRMPG 132 (186)
T ss_dssp HHCSEEEECSC
T ss_pred HHCCEEEEECC
T ss_conf 96999999689
No 19
>>3fkj_A Putative phosphosugar isomerases; NP_459564.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.12A {Salmonella typhimurium LT2} (A:1-173)
Probab=92.39 E-value=0.91 Score=25.53 Aligned_cols=119 Identities=13% Similarity=0.004 Sum_probs=65.0
Q ss_pred ECHHHHHHHH-HHHHHHHHHHHCCCCEEEEEECCHHH--HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5389999999-99999999861078816996078235--79999998633983142334587323426665556778998
Q gi|254780779|r 43 IDLSQTVPML-QKALQVISDTVARGGRILFVATKSQA--SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119 (278)
Q Consensus 43 IdL~kT~~~L-~~A~~~i~~i~~~gg~ILFVgTk~~~--~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l 119 (278)
-.+.+|+..+ .....-+.+...+.++|.|+|+.... .........+.| .-++-.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~a~~I~i~G~G~S~~~a~~~~~~l~~~~----------~~~~~~------------- 72 (173)
T 3fkj_A 16 YFQGXSVAHENARRIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLDCEA----------SKLAVG------------- 72 (173)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTSCCCEEEEEESTHHHHTTHHHHHHHHHHC----------SSCEEE-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHC----------CCCCEE-------------
T ss_conf 875876510018999999996589998999980369999999999999862----------399889-------------
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC-
Q ss_conf 8763012126774678876655677764344332211359579994388771----23212343398145403677670-
Q gi|254780779|r 120 EELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP- 194 (278)
Q Consensus 120 ~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp- 194 (278)
..+..+... .....-.-.|++|++....+. .+++.|+..|+|+|+|.+...+|
T Consensus 73 ---------~~~~~~~~~-------------~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~l 130 (173)
T 3fkj_A 73 ---------YITSNEFVH-------------ATPKALGKNSVVILASQQGNTAETVAAARVAREKGAATIGLVYQPDTPL 130 (173)
T ss_dssp ---------EEEHHHHHH-------------SCCTTCSTTEEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEESSTTCHH
T ss_pred ---------EECCHHHHC-------------CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCE
T ss_conf ---------971078760-------------5976689998899987899976899999999873972551214688751
Q ss_pred -HHCCC--EEEECCC
Q ss_conf -01152--0321577
Q gi|254780779|r 195 -DLVDY--VIPGNDD 206 (278)
Q Consensus 195 -~~idy--pIP~NDd 206 (278)
...|+ .+|.++.
T Consensus 131 ~~~ad~~l~~~~~~~ 145 (173)
T 3fkj_A 131 CEYSDYIIEYQWARY 145 (173)
T ss_dssp HHTCSEEEECBCCCT
T ss_pred EECCCCEEEEEEECC
T ss_conf 341572378753013
No 20
>>2a3n_A Putative glucosamine-fructose-6-phosphate aminotransferase; 16423107, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Salmonella typhimurium LT2} (A:1-192)
Probab=91.70 E-value=1.1 Score=25.02 Aligned_cols=136 Identities=10% Similarity=0.090 Sum_probs=71.9
Q ss_pred EECHHHHHHHHHH-HHHHHHHHHCCCCEEEEEECCHHHH--HHHHH-HHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7538999999999-9999998610788169960782357--99999-986339831423345873234266655567789
Q gi|254780779|r 42 IIDLSQTVPMLQK-ALQVISDTVARGGRILFVATKSQAS--DCVME-AAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLR 117 (278)
Q Consensus 42 IIdL~kT~~~L~~-A~~~i~~i~~~gg~ILFVgTk~~~~--~~i~~-~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~ 117 (278)
+=.+++|...+.. +..-+.....+.++|.|+|...... ..+.. +....+.+..... -+.++.
T Consensus 29 ~~~l~~~~~~~~~~~~~~~~~~l~~a~~i~i~G~G~S~~~a~~~~~~l~~l~~~~~~~~~-~~~~~~------------- 94 (192)
T 2a3n_A 29 LTSAREIIAARQKAEQVADEIYQAGFSSLFFASVGGSLAPXXAINEFAKELTTLPVYVEQ-AAELIH------------- 94 (192)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHCCSCEEEEECGGGHHHHHHHHHHHHHHCCSCEEEEE-HHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEE-HHHHHC-------------
T ss_conf 999999998799999999999967999799997117899999999999998599869984-167544-------------
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCC
Q ss_conf 988763012126774678876655677764344332211359579994388771----2321234339814540367767
Q gi|254780779|r 118 DLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSN 193 (278)
Q Consensus 118 ~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~d 193 (278)
.....-.--|++|++....+. -+++.|+..|+|+|+|.|.-.+
T Consensus 95 ---------------------------------~~~~~~~~~d~vI~iS~sg~s~~~~~~~~~ak~~g~~iI~IT~~~~s 141 (192)
T 2a3n_A 95 ---------------------------------KGNKRLNKDSVVITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADS 141 (192)
T ss_dssp ---------------------------------HCCTTCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTS
T ss_pred ---------------------------------CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHEEEEECCCC
T ss_conf ---------------------------------58887899997999968999767999999998630121133302454
Q ss_pred C--HHCCCEEE--ECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0--01152032--1577268999999999999999
Q gi|254780779|r 194 P--DLVDYVIP--GNDDSSRSIALFCDLVASAAID 224 (278)
Q Consensus 194 p--~~idypIP--~NDds~~si~l~~~~i~~ai~~ 224 (278)
| ...|+.|+ +.+...-+-.+....+...++.
T Consensus 142 ~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 176 (192)
T 2a3n_A 142 PLAQAATWHIPXRHKNGVEYEYXLLYWLFFRVLSR 176 (192)
T ss_dssp HHHHTCSEEEECCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 20022332101234543114317999999887775
No 21
>>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} (A:)
Probab=90.74 E-value=1.4 Score=24.41 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=76.3
Q ss_pred ECHHHHHHHHH----HHHHHHHHHHCCCCEEEEEECCHHH--HHHHHHHHHHCCC-EECCCCC--CC---CCCCCHHHHH
Q ss_conf 53899999999----9999999861078816996078235--7999999863398-3142334--58---7323426665
Q gi|254780779|r 43 IDLSQTVPMLQ----KALQVISDTVARGGRILFVATKSQA--SDCVMEAAKRSAQ-YCVNSKW--LG---GMMTNWKTVS 110 (278)
Q Consensus 43 IdL~kT~~~L~----~A~~~i~~i~~~gg~ILFVgTk~~~--~~~i~~~A~~~~~-~yV~~RW--lG---G~LTN~~ti~ 110 (278)
-.++.|...+. .++..+.+...+.++|.|+|+.... .......-.+.+. .+....+ ++ +++|.
T Consensus 18 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----- 92 (199)
T 1x92_A 18 ETKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITS----- 92 (199)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHH-----
T ss_conf 999999987599999999999999986998999888760888867877753332235200334302221012555-----
Q ss_pred HHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEE
Q ss_conf 5567789988763012126-774678876655677764344332211359579994388771----23212343398145
Q gi|254780779|r 111 QSIQKLRDLEELLNKENQG-FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIV 185 (278)
Q Consensus 111 ~si~~l~~l~~~~~~~~~~-~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvI 185 (278)
.... ...+. +..... ..-.-.|++|++....+. -+++.|+..|+|+|
T Consensus 93 --------~~~~--~~~~~~~~~~~~------------------~~~~~~dlvi~iS~sG~t~~~~~~~~~ak~~g~~~i 144 (199)
T 1x92_A 93 --------IAND--YSYNEVFSKQIR------------------ALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVV 144 (199)
T ss_dssp --------HHHH--TCGGGTTHHHHH------------------HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEE
T ss_pred --------HCCC--CCHHHHHHHHHH------------------HHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCEEE
T ss_conf --------3054--579999999999------------------845788389999658885301689999986265699
Q ss_pred EECCCCCCC--HHCCCE--EEECCC-CHH----HHHHHHHHHHHHHHHH
Q ss_conf 403677670--011520--321577-268----9999999999999999
Q gi|254780779|r 186 AVVDTNSNP--DLVDYV--IPGNDD-SSR----SIALFCDLVASAAIDG 225 (278)
Q Consensus 186 aivDTn~dp--~~idyp--IP~NDd-s~~----si~l~~~~i~~ai~~g 225 (278)
+|.+...+| ...|+. +|+.+. +.- +.-+++..|..++..-
T Consensus 145 ~iT~~~~s~L~~~ad~~l~~~~~~~~~~~~s~~~~~~~l~~L~~~~~~~ 193 (199)
T 1x92_A 145 ALTGRDGGGMASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLIDRQ 193 (199)
T ss_dssp EEECTTCHHHHHHCCTTCEEEECSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9991688417650567888999589972999999999999999999998
No 22
>>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3d7k_A* (A:182-367)
Probab=90.53 E-value=0.89 Score=25.59 Aligned_cols=131 Identities=10% Similarity=0.073 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEE-ECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999861078816996-078---235799999986339831423345873234266655567789988763012
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFV-ATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKE 126 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFV-gTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~ 126 (278)
.+.+++..|. +-.+.+|| |.. .++.+.+.++|+.+|.|+++.-+--|.+-.-. ...-|.
T Consensus 12 ~i~~~~~~L~----~A~rP~ii~G~~~~~~~a~~~l~~lae~lg~Pv~~t~~~~g~~~~~~-------------p~~~G~ 74 (186)
T 2uz1_A 12 DLDQALALLR----KAERPVIVLGSEASRTARKTALSAFVAATGVPVFADYEGLSMLSGLP-------------DAMRGG 74 (186)
T ss_dssp HHHHHHHHHH----HCSSEEEEECHHHHHHTCHHHHHHHHHHHCCCEEECGGGGGGGTTSC-------------GGGEEE
T ss_pred HHHHHHHHHH----HCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-------------CCHHHH
T ss_conf 9999999997----28898799832422102689999999971974222200012235675-------------300223
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEEC--
Q ss_conf 126774678876655677764344332211359579994388771232123433981454036776700115203215--
Q gi|254780779|r 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGN-- 204 (278)
Q Consensus 127 ~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~N-- 204 (278)
+..... ....+-.-+|+|++++..-.......-.....|-.-++--|.||..++.-.++.
T Consensus 75 ~~~~~~------------------~~~~~~~~aDlil~iG~~~~~~~~~~~~~~~~~~~~iI~id~d~~~~~~~~~~~~~ 136 (186)
T 2uz1_A 75 LVQNLY------------------SFAKADAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALG 136 (186)
T ss_dssp EGGGGG------------------GTTTTTCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCGGGTTSSSCCSEE
T ss_pred HHHHHH------------------HHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHEE
T ss_conf 310146------------------66654125421033210111121246555677432333356213332102110000
Q ss_pred --CCCHHHHHHHHH
Q ss_conf --772689999999
Q gi|254780779|r 205 --DDSSRSIALFCD 216 (278)
Q Consensus 205 --Dds~~si~l~~~ 216 (278)
-|...++.-++.
T Consensus 137 i~~d~~~~l~~L~~ 150 (186)
T 2uz1_A 137 IVADVGGTIEALAQ 150 (186)
T ss_dssp ECSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
T ss_conf 00011156676788
No 23
>>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:164-293)
Probab=89.41 E-value=1.7 Score=23.72 Aligned_cols=96 Identities=9% Similarity=-0.001 Sum_probs=63.6
Q ss_pred HHHHHHHHCCC-CEEEEEECCHHH------HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999861078-816996078235------79999998633983142334587323426665556778998876301212
Q gi|254780779|r 56 LQVISDTVARG-GRILFVATKSQA------SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQ 128 (278)
Q Consensus 56 ~~~i~~i~~~g-g~ILFVgTk~~~------~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~ 128 (278)
...+..+..+| .+|.||+..... ..-..+...+.|.++....+..+..+.........
T Consensus 6 ~~a~~~L~~~G~r~I~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 70 (130)
T 2o20_A 6 YQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAE--------------- 70 (130)
T ss_dssp HHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHH---------------
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHH---------------
T ss_conf 99999998718876443347877821999999999999984999885569955624777799999---------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 6774678876655677764344332211359579994388771232123433981------4540367
Q gi|254780779|r 129 GFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 129 ~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
......|+++|+.+...-.-+++.++++|+. +|++-|+
T Consensus 71 ------------------------~~~~~~~~aii~~~~~~a~~~~~~l~~~g~~iP~di~ii~fd~~ 114 (130)
T 2o20_A 71 ------------------------RLLERGATSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANS 114 (130)
T ss_dssp ------------------------HHHHTTCCEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEESSCC
T ss_pred ------------------------HHHHHCCCCEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf ------------------------98640345200135565555438999828988897699983784
No 24
>>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* (A:1-116,A:250-289)
Probab=88.34 E-value=0.71 Score=26.23 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=38.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC---CCHHHHHHHHHH
Q ss_conf 3595799943887712321234339814540367767001152032157---726899999999
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND---DSSRSIALFCDL 217 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND---ds~~si~l~~~~ 217 (278)
+.+|.+|+..+..+...++.+.+.|||+|.+-+. ....+++-=+.| =+..++++++..
T Consensus 71 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~---~~~~~~~~V~~D~~~~g~~a~~~l~~~ 131 (156)
T 2fep_A 71 KQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASV---EEQEETPSVAIDTYDIGAVAMRLLTKL 131 (156)
T ss_dssp TTCSEEEECCSCCCHHHHHHHHHSSSCEEEESCC---CTTCCSCEEECCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCC---CCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 5987401100134327676431222223333345---546532399843999999999999999
No 25
>>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} (A:1-114,A:247-292)
Probab=88.22 E-value=1.3 Score=24.52 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=29.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 13595799943887712321234339814540
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
.+.+|.+|++.+..+...++++.+.|||+|.+
T Consensus 67 ~~~vDGiIi~~~~~~~~~~~~l~~~~iPvV~i 98 (160)
T 3k4h_A 67 GRQIGGIILLYSRENDRIIQYLHEQNFPFVLI 98 (160)
T ss_dssp TTCCCEEEESCCBTTCHHHHHHHHTTCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCCCCC
T ss_conf 37866576530234312333455325322334
No 26
>>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:1-108,A:243-305)
Probab=87.49 E-value=0.79 Score=25.90 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=33.9
Q ss_pred CCCCEEEEECCC--CCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC
Q ss_conf 359579994388--7712321234339814540367767001152032157
Q gi|254780779|r 157 GLPDLMFVVDTN--REKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND 205 (278)
Q Consensus 157 ~lP~~iiv~d~~--~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND 205 (278)
+-||.|++.-+. .-.-++++|.+.|||+|.+ |+..+....+..|=.|.
T Consensus 60 ~~vdGIii~p~d~~~~~~~i~~a~~~gIPVV~i-d~~~~~~~~~~~V~~D~ 109 (171)
T 3g1w_A 60 KNPAGIAISAIDPVELTDTINKAVDAGIPIVLF-DSGAPDSHAHSFLGTNT 109 (171)
T ss_dssp HCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEECCH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCEEEEECH
T ss_conf 799999996787377899999999869929998-16777677642995169
No 27
>>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum str} (A:17-160)
Probab=86.63 E-value=2.6 Score=22.62 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=36.7
Q ss_pred CCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCC---CHHHHHH
Q ss_conf 9579994388771----23212343398145403677670011520321577---2689999
Q gi|254780779|r 159 PDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDD---SSRSIAL 213 (278)
Q Consensus 159 P~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDd---s~~si~l 213 (278)
.|++|++....+. -+++.|++.|+|+|++.+.+.--...|+.+....+ +..++.-
T Consensus 64 ~dvvI~iS~sg~~~~~~~~~~~ak~~g~~ii~iT~~s~l~~~ad~~i~~~~~~e~~~~~~~s 125 (144)
T 1tzb_A 64 DGLLIAVSYSGNTIETLYTVEYAKRRRIPAVAITTGGRLAQMGVPTVIVPKASAPRAALPQL 125 (144)
T ss_dssp SSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEEESSTTGGGSSSCEEECCCCSSGGGGHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHCCCCEEEECCCCCHHHHHH
T ss_conf 80899984895878899999999751870420689985998603453575213320147899
No 28
>>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:1-107,A:244-301)
Probab=86.59 E-value=1.4 Score=24.33 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=43.1
Q ss_pred CCCCCEEEEECCCCC--CHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 135957999438877--12321234339814540367767001152032157726899999999999999999
Q gi|254780779|r 156 GGLPDLMFVVDTNRE--KLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGI 226 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e--~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~ 226 (278)
.+.||.+++.-+..+ ..+++++...+||+|.+ |++.++...++.+-.| -.+ =.-+...++...+.|.
T Consensus 58 ~~~vDGIIi~~~~~~~~~~~i~~l~~~gIPVV~i-d~~~~~~~~~~~v~~D--~~~-~~~~~~~~~~~~~~~~ 126 (165)
T 1tjy_A 58 NQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTW-DSDTKPECRSYYINQG--VVQ-QGKISVYVANALLKNM 126 (165)
T ss_dssp HTTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEE-SSCCCGGGCSEEEESC--HHH-HHHHHHHHHHHHHTTC
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEC-CCCCCCCCCCEEEECC--HHH-HHHHHHHHHHHHHCCC
T ss_conf 7399744201333202456888765058520103-5433356664034227--999-9999999999997799
No 29
>>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} (A:1-114,A:247-295)
Probab=86.58 E-value=1.3 Score=24.52 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=38.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC
Q ss_conf 13595799943887712321234339814540367767001152032157
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND 205 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND 205 (278)
.+.+|.+|++.+..+...++.+.+.+||+|.+ |...+...++|..+-|.
T Consensus 66 ~~~vDGiII~~~~~~~~~i~~l~~~~iPvVli-d~~~~~~~~~~V~~DNy 114 (163)
T 3hcw_A 66 QRMVDAFILLYSKENDPIKQMLIDESMPFIVI-GKPTSDIDHQFTHIDND 114 (163)
T ss_dssp TTCCSEEEESCCCTTCHHHHHHHHTTCCEEEE-SCCCSSGGGGSCEEEEC
T ss_pred HCCCCEEEEEECCCCCHHHHHHHHHHCCCEEE-ECCCCCCCCCEECCCCC
T ss_conf 66998499972255315678888640100025-30356677653022223
No 30
>>1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase; 2.80A {Rhodospirillum rubrum} (A:253-399)
Probab=86.47 E-value=2.6 Score=22.57 Aligned_cols=93 Identities=15% Similarity=0.028 Sum_probs=65.3
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCE--------------------ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 881699607823579999998633983--------------------142334587323426665556778998876301
Q gi|254780779|r 66 GGRILFVATKSQASDCVMEAAKRSAQY--------------------CVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNK 125 (278)
Q Consensus 66 gg~ILFVgTk~~~~~~i~~~A~~~~~~--------------------yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~ 125 (278)
.-.|++.|-++..+..+-.+++.-.+- =+..||--|+.+||.+--
T Consensus 5 ~vnI~v~GH~p~l~~~i~~~~~~~~~~~ak~~gA~gI~i~G~cCTg~e~~~r~g~~~~Gn~~~qe--------------- 69 (147)
T 1jqk_A 5 AVNIAVNGHNPMLSDIICDVAADLRDEAIAAGAAEGINIIGICCTGHEVMMRHGVPLATNYLSQE--------------- 69 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHTTTHHHHTTCTTEEEEEEEHHHHHHHHHHSCCCEEECSTTTT---------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHCCCCCCCCHHHHH---------------
T ss_conf 86699989981478999998666999999845688618998736478777643885336788876---------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHH--CCC
Q ss_conf 21267746788766556777643443322113595799943887712321234339814540367767001--152
Q gi|254780779|r 126 ENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDL--VDY 199 (278)
Q Consensus 126 ~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~--idy 199 (278)
.. -.++.+|++++=-+---.-...+|.++++|+|+.-|..+=|.- ++|
T Consensus 70 ---------~~-----------------i~TGavD~vVvD~qCi~p~l~~~a~~~~tk~Itt~~~ak~~ga~~i~~ 119 (147)
T 1jqk_A 70 ---------LP-----------------ILTGALEAMVVDVQCIMPSLPRIAECFHTQIITTDKHNKISGATHVPF 119 (147)
T ss_dssp ---------HH-----------------HHTTCCCEEEECSSSCCTTHHHHHHTSSCEEEECCTTCCCTTSEECCC
T ss_pred ---------HH-----------------HHCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEECCCCCCCCCEECCC
T ss_conf ---------88-----------------626886439976667898858899861886698146445278875358
No 31
>>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, JCSG, PSI, protein structure initiative; 1.80A {Thermotoga maritima} (A:44-182)
Probab=85.95 E-value=2.5 Score=22.72 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=36.5
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC----HHCCCEEEECCCCHH
Q ss_conf 957999438877----123212343398145403677670----011520321577268
Q gi|254780779|r 159 PDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP----DLVDYVIPGNDDSSR 209 (278)
Q Consensus 159 P~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp----~~idypIP~NDds~~ 209 (278)
=|++|++....+ ..+++.|++.|+|+|+|.|...+| ..+...+|+++.+..
T Consensus 58 ~d~vi~iS~sg~t~~~~~~~~~ak~~g~~vi~iT~~~~s~l~~~ad~~l~~~~~~~~~~ 116 (139)
T 1j5x_A 58 RGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLVFPVREEAIV 116 (139)
T ss_dssp SEEEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESCTTSHHHHHSSEEEECCCCCCSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCEEEEECCCCCCHH
T ss_conf 86799976899967999999999876980887624666410003660564214321003
No 32
>>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus} (A:1-102,A:224-275)
Probab=85.65 E-value=1 Score=25.12 Aligned_cols=63 Identities=8% Similarity=0.161 Sum_probs=43.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCC-----------CCCCHHCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 13595799943887712321234339814540367-----------7670011520321577268999999999
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDT-----------NSNPDLVDYVIPGNDDSSRSIALFCDLV 218 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDT-----------n~dp~~idypIP~NDds~~si~l~~~~i 218 (278)
.+.+|.+|+.....+.-.+..+.+.+||+|.+-.. .+.|.+-+.-.|..+=+..++++++..+
T Consensus 57 ~~~vdGiIi~~~~~~~~~~~~l~~~~iP~V~~~~~~~~~~~~~V~~~~~P~LTTv~~~~~~~g~~A~~~l~~~i 130 (154)
T 3d8u_A 57 ESRPAGVVLFGSEHSQRTHQLLEASNTPVLEIAELSSKASYLNIGVHAYPSLTSAEFDYERXGTKAAEKLLHAI 130 (154)
T ss_dssp TSCCCCEEEESSCCCHHHHHHHHHHTCCEEEESSSCSSSSSEEECBTSSSCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEEEECCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEEHCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 70998787301210157999998528862000112357888888631689944998499999999999999996
No 33
>>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} (A:1-171,A:340-364)
Probab=85.56 E-value=2.9 Score=22.28 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=37.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCC-------HHCCCEEEECCCCH
Q ss_conf 5957999438877123212343398145403677670-------01152032157726
Q gi|254780779|r 158 LPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNP-------DLVDYVIPGNDDSS 208 (278)
Q Consensus 158 lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp-------~~idypIP~NDds~ 208 (278)
.||+|+...+.-...+...|..+|||+|...-..-.. ...|..+....+..
T Consensus 96 kpDiI~~~~~~~~~~~~~~~~~~~ip~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (196)
T 1f0k_A 96 KPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAF 153 (196)
T ss_dssp CCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSSCCHHHHHHTTTCSEEEESSTTSS
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCEEEECCCHHH
T ss_conf 9978997897341999999986699889982687743677888653044764141320
No 34
>>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; NP_391141.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis} (A:1-155)
Probab=85.55 E-value=2.9 Score=22.28 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=33.9
Q ss_pred CCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHCCCE--EEECCC
Q ss_conf 9579994388771----23212343398145403677670--011520--321577
Q gi|254780779|r 159 PDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLVDYV--IPGNDD 206 (278)
Q Consensus 159 P~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~idyp--IP~NDd 206 (278)
-|++|++....+. -+++.|++.|+|+|+|.+...+| ..-|+. +|+.+.
T Consensus 75 ~dlvi~iS~sG~t~~~~~~~~~a~~~g~~~I~iT~~~~s~l~~~ad~~l~~~~~~~ 130 (155)
T 3eua_A 75 KSLVILCSHSGNTPETVKAAAFARGKGALTIAXTFKPESPLAQEAQYVAQYDWGDE 130 (155)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCCSTT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHCCCCCCEECCCCC
T ss_conf 96899980899986799999865530221332127632111212454400023643
No 35
>>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:1-98,A:233-276)
Probab=85.05 E-value=1.1 Score=25.01 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=38.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEEC
Q ss_conf 1359579994388771232123433981454036776700115203215
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGN 204 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~N 204 (278)
.+.+|.|+++........+..+.+.+||+|.+ |+++..+++...-|
T Consensus 53 ~~~vDGIIl~~~~~~~~~~~~l~~~~iPvV~i---d~~~~~~~~V~~Dn 98 (142)
T 2h0a_A 53 AYLTDGLILASYDLTERFEEGRLPTERPVVLV---DAQNPRYDSVYLDN 98 (142)
T ss_dssp -CCCSEEEEESCCCC------CCSCSSCEEEE---SSCCTTSEEEEECS
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHCCCCCCC---CCCCCCCEEEEECH
T ss_conf 55898789841330067899876514652122---23576421787311
No 36
>>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:61-174,A:321-366)
Probab=84.93 E-value=1.3 Score=24.49 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=41.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHH
Q ss_conf 135957999438877123212343398145403677670011520321577268
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSR 209 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~ 209 (278)
.+.+|.+|++.+..+...++++.+.+||+|.+ |..++-..++|...-|-.-.+
T Consensus 66 ~~~vDGiIl~~~~~~~~~i~~L~~~~iPvV~i-d~~~~~~~~~~V~~DN~~~~~ 118 (160)
T 3h5t_A 66 NAAVDGVVIYSVAKGDPHIDAIRARGLPAVIA-DQPAREEGMPFIAPNNRNKLK 118 (160)
T ss_dssp TCCCSCEEEESCCTTCHHHHHHHHHTCCEEEE-SSCCSCTTCCEEEECHHHHHH
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCHHHHHH
T ss_conf 41456542113332203566665127874234-543346777744551679999
No 37
>>3cf4_A Acetyl-COA decarbonylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri} (A:225-402,A:486-495)
Probab=84.86 E-value=3.1 Score=22.07 Aligned_cols=97 Identities=13% Similarity=0.186 Sum_probs=64.8
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCE-------------ECCCCC-------CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 07881699607823579999998633983-------------142334-------5873234266655567789988763
Q gi|254780779|r 64 ARGGRILFVATKSQASDCVMEAAKRSAQY-------------CVNSKW-------LGGMMTNWKTVSQSIQKLRDLEELL 123 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~i~~~A~~~~~~-------------yV~~RW-------lGG~LTN~~ti~~si~~l~~l~~~~ 123 (278)
.+.=.|++.|-++.....+-+.++.-+.- =+..|| -.|+.+||.+--
T Consensus 16 ~d~vNI~v~GH~p~l~~~iv~~~~~~e~a~gI~i~G~cCTG~el~~r~~~~~~~~g~~~~Gn~~~qE------------- 82 (188)
T 3cf4_A 16 KSKPFLCVIGHNVAGVTYMMDYMEDNNLTDKMEIAGLCCTAIDLTRYKEADRRPPYAKVIGSMSKEL------------- 82 (188)
T ss_dssp TTSCEEEEESSCCHHHHHHHHHHHHTTCTTTSEEEEESHHHHHHTTTTCTTCCCCCSEEEESGGGHH-------------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHCCCCCHHCCCCCCCCHHHHHH-------------
T ss_conf 8875699978882589999999875423258779998251577775245520026762237299999-------------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCC--CHHCCCEE
Q ss_conf 0121267746788766556777643443322113595799943887712321234339814540367767--00115203
Q gi|254780779|r 124 NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSN--PDLVDYVI 201 (278)
Q Consensus 124 ~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~d--p~~idypI 201 (278)
.+. .++.+|++++=-+---.-...+|.++++|+|+..|..+- ++.++|..
T Consensus 83 -----------~~i-----------------~TGavD~vVvD~QCi~p~l~~~A~~~~tklItTsd~a~~~g~~~~~~~~ 134 (188)
T 3cf4_A 83 -----------KVI-----------------RSGMPDVIVVDEQCVRGDIVPEAQKLKIPVIASNPKIMYGLPNRTDADV 134 (188)
T ss_dssp -----------HHH-----------------HHTCCSEEEECSSSCCTTHHHHHHHTTCCEEECSTTCCTTCCBCTTSCH
T ss_pred -----------HHH-----------------HCCCCCEEEEECCCCCCCHHHHHHHHCCEEEEECHHHCCCCCCCCCCCH
T ss_conf -----------999-----------------7289744998542467664999998698489823222046654444544
No 38
>>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} (A:1-101,A:232-277)
Probab=84.79 E-value=1.4 Score=24.42 Aligned_cols=48 Identities=15% Similarity=0.010 Sum_probs=35.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCC
Q ss_conf 135957999438877123212343398145403677670011520321577
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDD 206 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDd 206 (278)
...+|.+|++.+..+.-.++++...+||+|.+-+. ++..+++--+.|.
T Consensus 55 ~~~vDGIIi~~~~~~~~~i~~l~~~~IPvV~id~~---~~~~~i~~V~~D~ 102 (147)
T 3cs3_A 55 EKMVDGAIILDWTFPTKEIEKFAERGHSIVVLDRT---TEHRNIRQVLLDK 102 (147)
T ss_dssp TTTCSEEEEECTTSCHHHHHHHHHTTCEEEESSSC---CCSTTEEEEEECH
T ss_pred HCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCC---CCCCCCCEECCCH
T ss_conf 71977420113200189998752148874322233---3356653012459
No 39
>>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} (A:1-185,A:357-384)
Probab=84.28 E-value=3.3 Score=21.91 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHCCCEEEEEC
Q ss_conf 5567776434433221135957999438877-123212343398145403
Q gi|254780779|r 140 RKRDKLKRALDGIRDMGGLPDLMFVVDTNRE-KLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 140 r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e-~~Av~EA~kl~IPvIaiv 188 (278)
.-..++++.+.-. .||+|+|.+-..+ ..+..-|.+++|||+-+-
T Consensus 73 ~~i~~l~~vl~~~-----kPDlVlV~GD~~~~la~AlaA~~~~IPVaHie 117 (213)
T 1vgv_A 73 RILEGLKPILAEF-----KPDVVLVHGDTTTTLATSLAAFYQRIPVGHVE 117 (213)
T ss_dssp HHHHHHHHHHHHH-----CCSEEEEETTCHHHHHHHHHHHTTTCCEEEES
T ss_pred HHHHHHHHHHHHC-----CCCCCEEECCCCCHHHHHHHHHHHCCEEEEEE
T ss_conf 9998648889744-----66540320365311348999874164389862
No 40
>>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiamine diphosphate; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* (A:192-368)
Probab=83.87 E-value=3.4 Score=21.80 Aligned_cols=130 Identities=11% Similarity=0.073 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999861078816996078---2357999999863398314233458732342666555677899887630121
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
.+++++..|. ....-++++|.. ..+.+.+.++|+++|.|+++.-+=.|.+-.-. ..+
T Consensus 9 ~i~~~~~~L~---~A~rPvii~G~~~~~~~a~~~l~~lae~~g~Pv~~~~~~k~~~~~~~-----------------p~~ 68 (177)
T 2q28_A 9 SVTSAISLLA---KAERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTH-----------------PLS 68 (177)
T ss_dssp HHHHHHHHHH---HCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTC-----------------TTB
T ss_pred HHHHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-----------------CCC
T ss_conf 9999998765---33698799953533325799999997532587522111134566668-----------------643
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCC
Q ss_conf 26774678876655677764344332211359579994388771232123433981454036776700115203215772
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDS 207 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds 207 (278)
-+..-.+ +-+-+|+|++++..-...-...-. ...|-..++.-|.||..+++--++.---
T Consensus 69 ~g~~~~~--------------------~l~~aDlii~iG~~~~~~~~~~~~-~~~~~~~vi~i~~d~~~~~~~~~~~~~i 127 (177)
T 2q28_A 69 AAAARSF--------------------ALANADVVMLVGARLNWLLAHGKK-GWAADTQFIQLDIEPQEIDSNRPIAVPV 127 (177)
T ss_dssp CGGGHHH--------------------HHHHCSEEEEESCCCSGGGGGGTT-TSCTTCEEEEEESCGGGTTSSSCCSEEE
T ss_pred CCCCHHH--------------------HHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 3544021--------------------203200022223432222343212-3686544334566753222345512324
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 68999999999999
Q gi|254780779|r 208 SRSIALFCDLVASA 221 (278)
Q Consensus 208 ~~si~l~~~~i~~a 221 (278)
.-.+..++..+.+.
T Consensus 128 ~~d~~~~l~~L~~~ 141 (177)
T 2q28_A 128 VGDIASSMQGMLAE 141 (177)
T ss_dssp ESCHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHH
T ss_conf 20036899999997
No 41
>>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} (A:16-117)
Probab=82.96 E-value=3.7 Score=21.57 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=53.9
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 0788169960782357999999863398314-233458732342666555677899887630121267746788766556
Q gi|254780779|r 64 ARGGRILFVATKSQASDCVMEAAKRSAQYCV-NSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKR 142 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV-~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~ 142 (278)
+++++|+|+|........+..+....|...+ ... -.... ...++...-..+.++..
T Consensus 2 ~k~k~v~v~GlG~sG~salA~~L~~~G~~V~~~D~-~~~~~------------~~~l~~~~i~~~~g~~~---------- 58 (102)
T 2f00_A 2 RRVRHIHFVGIGGAGXGGIAEVLANEGYQISGSDL-APNPV------------TQQLXNLGATIYFNHRP---------- 58 (102)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHTTCEEEEECS-SCCHH------------HHHHHHTTCEEESSCCG----------
T ss_pred HCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEEC-CCCHH------------HHHHHHCCCEEECCCCH----------
T ss_conf 14787999985899999999999968991899948-99979------------99999788989869898----------
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEC-CCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 777643443322113595799943-8877123212343398145403
Q gi|254780779|r 143 DKLKRALDGIRDMGGLPDLMFVVD-TNREKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 143 ~kl~k~lgGi~~m~~lP~~iiv~d-~~~e~~Av~EA~kl~IPvIaiv 188 (278)
..-.-.|+||+.. ...++-.+.+|+..|||+++-.
T Consensus 59 -----------~~l~~~d~VV~SPgi~~~~p~l~~a~~~gi~i~~~~ 94 (102)
T 2f00_A 59 -----------ENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRA 94 (102)
T ss_dssp -----------GGGTTCSEEEECTTCCTTCHHHHHHHHTTCCEEEHH
T ss_pred -----------HHCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEHH
T ss_conf -----------886899899989984998999999998899699889
No 42
>>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} (A:1-116,A:254-304)
Probab=82.45 E-value=2.9 Score=22.32 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=38.4
Q ss_pred CCCCCEEEEECCCCC--CHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 135957999438877--1232123433981454036776700115203215772689999999999999
Q gi|254780779|r 156 GGLPDLMFVVDTNRE--KLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAA 222 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e--~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai 222 (278)
.+-+|+|+|.-...+ .-++++|...|||+|.+ |+..+.......|-. |...--++-...+.+++
T Consensus 67 ~~~vDgIii~p~~~~~~~~~i~~~~~~gIPvV~i-d~~~~~~~~~~~Vg~--Dp~~~G~~av~~~~~~l 132 (167)
T 3gbv_A 67 EEQPDGVXFAPTVPQYTKGFTDALNELGIPYIYI-DSQIKDAPPLAFFGQ--NPELQGFNSIKTLCDHL 132 (167)
T ss_dssp TTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEE-SSCCTTSCCSEEEEC--CHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCCCCC--HHHHHHHHHHHHHHHHH
T ss_conf 7599989996045320299999999719779999-602323322222451--09999999999999998
No 43
>>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* (A:1-106,A:247-290)
Probab=81.74 E-value=4.1 Score=21.28 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=38.3
Q ss_pred CCCCEEEEEC--CCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3595799943--88771232123433981454036776700115203215772689999999999999999
Q gi|254780779|r 157 GLPDLMFVVD--TNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDG 225 (278)
Q Consensus 157 ~lP~~iiv~d--~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g 225 (278)
+-+|+|++.. +....-.++++...|||+|.+-....+++...+.+ +.| ..-+....-.++.+.+.|
T Consensus 57 ~~vdgIIi~~~~~~~~~~~i~~l~~~gIPvV~id~~~~~~~~~~~~V-~~D--p~~~~~~~~~~~~~~~~g 124 (150)
T 2fn9_A 57 AGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARGLAVAQI-YSD--PKLMARLAVEWADQYLRG 124 (150)
T ss_dssp TTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSCCSCSSSSSEEE-EEC--HHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEE-CCC--HHHHHHHHHHHHHHHHCC
T ss_conf 59986987315652149999999975996256436765455666666-010--999999999999999659
No 44
>>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} (A:1-114,A:252-303)
Probab=81.07 E-value=2.9 Score=22.25 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=29.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 135957999438877123212343398145403
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaiv 188 (278)
.+.+|.++++.+..+.-.+.++...|||+|.+-
T Consensus 69 ~~~vDGiIi~~~~~~~~~~~~l~~~~iPvV~id 101 (166)
T 3kke_A 69 EGRVDGVLLQRREDFDDDMLAAVLEGVPAVTIN 101 (166)
T ss_dssp SCSSSEEEECCCTTCCHHHHHHHHTTSCEEEES
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 589788983245687599999997599889816
No 45
>>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} (A:450-608)
Probab=81.00 E-value=4.4 Score=21.11 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=60.5
Q ss_pred HHHHHHHCCCCEEEEEECCHHH---HHHHHHHHHHCCCEEC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999861078816996078235---7999999863398314---233458732342666555677899887630121267
Q gi|254780779|r 57 QVISDTVARGGRILFVATKSQA---SDCVMEAAKRSAQYCV---NSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGF 130 (278)
Q Consensus 57 ~~i~~i~~~gg~ILFVgTk~~~---~~~i~~~A~~~~~~yV---~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~ 130 (278)
+-+.+...+-++|.|+|..... ...-.++.+-+|.+.. ..-|..|.+-+
T Consensus 6 ~~~~~~l~~a~~i~i~G~G~s~~~A~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~------------------------- 60 (159)
T 2bpl_A 6 EALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLAL------------------------- 60 (159)
T ss_dssp HHHHGGGTTCCEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGG-------------------------
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHCCCHHH-------------------------
T ss_conf 6678987457651587268722999999999987617214764388830475866-------------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC---C-CH-HHHHHHHCCCEEEEECCCCCCCH--H--CCCEE
Q ss_conf 746788766556777643443322113595799943887---7-12-32123433981454036776700--1--15203
Q gi|254780779|r 131 TKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNR---E-KL-AIQEARRLRIPIVAVVDTNSNPD--L--VDYVI 201 (278)
Q Consensus 131 tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~---e-~~-Av~EA~kl~IPvIaivDTn~dp~--~--idypI 201 (278)
+. -=|++|++.... + .. +++.|++.|+|+|.+.|.+.+|- . ..+.+
T Consensus 61 ------------------------~~-~~d~vi~is~~g~~~e~~~~~~~~ak~~g~~vi~it~~~~s~~~~~~~~~~~~ 115 (159)
T 2bpl_A 61 ------------------------ID-ADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEM 115 (159)
T ss_dssp ------------------------CC-TTCEEEEEECSSTTHHHHHHHHHHHHHTTCEEEEEEETTSCCCCBTTEEEEEE
T ss_pred ------------------------CC-CCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEC
T ss_conf ------------------------07-99709999779736999999999999669959999758733244566407977
Q ss_pred EECCCCHHHH
Q ss_conf 2157726899
Q gi|254780779|r 202 PGNDDSSRSI 211 (278)
Q Consensus 202 P~NDds~~si 211 (278)
|.++....+.
T Consensus 116 ~~~~~~~~~~ 125 (159)
T 2bpl_A 116 PHVEEVIAPI 125 (159)
T ss_dssp CCCCGGGHHH
T ss_pred CCCCHHHHHH
T ss_conf 9974557679
No 46
>>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A* (A:1-216)
Probab=80.92 E-value=2.9 Score=22.26 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=34.7
Q ss_pred CCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEE
Q ss_conf 9579994388771----23212343398145403677670--011520321
Q gi|254780779|r 159 PDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPG 203 (278)
Q Consensus 159 P~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~ 203 (278)
.|++|++....+. .+++.|+..|+|+|+|.+...+| ...|+.+..
T Consensus 108 ~dvvi~iS~sG~t~e~~~~~~~ak~~g~~~i~iT~~~~s~l~~~ad~~~~~ 158 (216)
T 2zj3_A 108 DDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHI 158 (216)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEC
T ss_conf 877999966889778999999999879939999778998650027734442
No 47
>>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} (A:1-121,A:264-350)
Probab=80.86 E-value=3 Score=22.22 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=37.2
Q ss_pred CCCCEEEEECCCC-CCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHH
Q ss_conf 3595799943887-7123212343398145403677670011520321577268
Q gi|254780779|r 157 GLPDLMFVVDTNR-EKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSR 209 (278)
Q Consensus 157 ~lP~~iiv~d~~~-e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~ 209 (278)
..||+|++..... ..-++++|..-|||+|.+ |+..+.+.++|.-+-|-.+-+
T Consensus 61 ~~vD~Iii~p~~~~~~~~i~~a~~~gIPVV~i-ds~l~~~~~~~Vg~Dn~~~G~ 113 (208)
T 3h75_A 61 DKPDYLXLVNEQYVAPQILRLSQGSGIKLFIV-NSPLTLDQRELIGQSRQNYSD 113 (208)
T ss_dssp SCCSEEEEECCSSHHHHHHHHHTTSCCEEEEE-ESCCCTTTC------------
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHCCCEEEEE-CCCCCCCCCCCCCCCCCCCCC
T ss_conf 98699997784203699999999779949992-665565310000135434676
No 48
>>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} (A:1-116)
Probab=80.15 E-value=4.7 Score=20.93 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=49.3
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEE-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 078816996078235799999986339831-4233458732342666555677899887630121267746788766556
Q gi|254780779|r 64 ARGGRILFVATKSQASDCVMEAAKRSAQYC-VNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKR 142 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~i~~~A~~~~~~y-V~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~ 142 (278)
.++.+|+|+|-.......+..++...|... +... +. -.....++...-.-+.+...
T Consensus 16 ~~~~~v~viGlG~sG~salA~~L~~~G~~V~~~D~-------~~------~~~~~~~~~~g~~~~~g~~~---------- 72 (116)
T 1p3d_A 16 RRVQQIHFIGIGGAGXSGIAEILLNEGYQISGSDI-------AD------GVVTQRLAQAGAKIYIGHAE---------- 72 (116)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEES-------CC------SHHHHHHHHTTCEEEESCCG----------
T ss_pred HCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEEC-------CC------CHHHHHHHHCCCEEECCCCH----------
T ss_conf 13778999996699999999999978893999928-------99------97999999787999879998----------
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEC-CCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 777643443322113595799943-8877123212343398145403
Q gi|254780779|r 143 DKLKRALDGIRDMGGLPDLMFVVD-TNREKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 143 ~kl~k~lgGi~~m~~lP~~iiv~d-~~~e~~Av~EA~kl~IPvIaiv 188 (278)
.--.-+|++|+.- ...++-.+.+|+..||||++-+
T Consensus 73 -----------~~l~~~d~vV~SPgi~~~~p~~~~a~~~gi~i~~e~ 108 (116)
T 1p3d_A 73 -----------EHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQRA 108 (116)
T ss_dssp -----------GGGTTCSEEEECTTSCTTCHHHHHHHHTTCCEEEHH
T ss_pred -----------HHCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEHH
T ss_conf -----------996999999989974998999999998699697599
No 49
>>3hba_A Putative phosphosugar isomerase; YP_563707.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217} (A:42-147)
Probab=79.96 E-value=3.8 Score=21.52 Aligned_cols=46 Identities=28% Similarity=0.403 Sum_probs=35.6
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEEC
Q ss_conf 957999438877----123212343398145403677670--0115203215
Q gi|254780779|r 159 PDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPGN 204 (278)
Q Consensus 159 P~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~N 204 (278)
-|++|++....+ .-+++.|+..|+|+|+|.|...+| ...|+.+...
T Consensus 50 ~d~vi~iS~sg~t~~~~~~~~~ak~~ga~ii~iT~~~~s~la~~ad~~l~~~ 101 (106)
T 3hba_A 50 GGLVIVISQSGRSPDILAQARXAKNAGAFCVALVNDETAPIKDIVDVVIPLR 101 (106)
T ss_dssp TCEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEECC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCCCCCC
T ss_conf 8289998337787679999998986697378763047774223215432123
No 50
>>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} (A:1-108,A:245-290)
Probab=79.28 E-value=3.5 Score=21.76 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=44.2
Q ss_pred CCCCCEEEEECCCCC--CHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 135957999438877--123212343398145403677670011520321577268999999999999999999
Q gi|254780779|r 156 GGLPDLMFVVDTNRE--KLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIA 227 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e--~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~ 227 (278)
.+-+|.|++.-+..+ .-+++++...|||+|.+ |+..++....+.+.-| ...-.+-+..++.+.+.|+.
T Consensus 59 ~q~VDGIIi~~~d~~~~~~~i~~l~~~gIpvV~i-d~~~~~~~~~~~v~dD---~~~~~~~~~~~~~~~~~~~~ 128 (154)
T 3d02_A 59 ARKVDAITIVPNDANVLEPVFKKARDAGIVVLTN-ESPGQPSANWDVEIID---PATAGYALAAVASTLLNGKT 128 (154)
T ss_dssp HTTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEE-SCTTCTTCSEEEESSC---HHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEC-CCCCCCCCCCEEEEEC---HHHHHHHHHHHHHHHHCCCC
T ss_conf 7599989994258411048999999769958844-7888877774099857---99999999999999976998
No 51
>>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:1-109,A:242-289)
Probab=79.04 E-value=3.1 Score=22.10 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=36.9
Q ss_pred CCCCCEEEEECCCCCCH-HHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCC
Q ss_conf 13595799943887712-32123433981454036776700115203215772
Q gi|254780779|r 156 GGLPDLMFVVDTNREKL-AIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDS 207 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~-Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds 207 (278)
.+.+|.++++.+..+.. ++..+...|||+|.+ |+..+...+++..+-|-++
T Consensus 61 ~~~vDGiIi~~~~~~~~~~~~~l~~~~iPvV~i-d~~~~~~~~~~V~~Dn~~~ 112 (157)
T 1dbq_A 61 QKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVM-DWGEAKADFTDAVIDNKDS 112 (157)
T ss_dssp HTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEE-ECSSCCSSSCEEEEECSHH
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEE-EECCCCCCCCEEEEECHHH
T ss_conf 458766884265565057899986069968998-5036889988499707999
No 52
>>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} (A:61-168,A:301-332)
Probab=78.72 E-value=2.9 Score=22.26 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 3595799943887712321234339814540367767
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSN 193 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~d 193 (278)
+-+|.++++....+.-.++++.+.|||+|.+-+...+
T Consensus 63 ~~vDGiIi~~~~~~~~~v~~l~~~~IPvV~id~~~~~ 99 (140)
T 3kjx_A 63 WRPSGVIIAGLEHSEAARAXLDAAGIPVVEIXDSDGK 99 (140)
T ss_dssp TCCSEEEEECSCCCHHHHHHHHHCSSCEEEEEECSSC
T ss_pred CCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 3885145431023101344431168862788402468
No 53
>>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:1-108,A:241-291)
Probab=78.28 E-value=2.5 Score=22.71 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=36.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC
Q ss_conf 3595799943887712321234339814540367767001152032157
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND 205 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND 205 (278)
+.+|.|+++....+.-.+..+...+||+|.+... +...++|--+.|
T Consensus 63 ~~vDGIII~~~~~~~~~i~~l~~~giPvV~id~~---~~~~~~~~V~~D 108 (159)
T 3egc_A 63 RRVDGLILAPSEGEHDYLRTELPKTFPIVAVNRE---LRIPGCGAVLSE 108 (159)
T ss_dssp TTCSEEEECCCSSCCHHHHHSSCTTSCEEEESSC---CCCTTCEEEEEC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC---CCCCCCEEEEEH
T ss_conf 6973885310121101589998633554223455---568874489744
No 54
>>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} (A:194-372)
Probab=78.25 E-value=5.3 Score=20.56 Aligned_cols=115 Identities=10% Similarity=0.099 Sum_probs=62.1
Q ss_pred HHHHCCCCEEEEE-ECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9861078816996-078---235799999986339831423345873234266655567789988763012126774678
Q gi|254780779|r 60 SDTVARGGRILFV-ATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKER 135 (278)
Q Consensus 60 ~~i~~~gg~ILFV-gTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~ 135 (278)
.+...+..+.++| |.. ..+.+.+.++|+++|.|+++.-.=.|.+-+-.-. +-+..-.+
T Consensus 14 ~~~L~~A~rPvIi~G~~~~~~~a~~~l~~lae~~giPv~~~~~~kg~~p~~~p~-----------------~~g~~~~~- 75 (179)
T 2c31_A 14 ADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQ-----------------SAAATRAF- 75 (179)
T ss_dssp HHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTT-----------------BCGGGHHH-
T ss_pred HHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-----------------CCCCCCCC-
T ss_conf 999861689589996231134478999887874186512220124556643432-----------------21000132-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH----HHHHCCCEEEEECCCCCCCH------HCCCEEEECC
Q ss_conf 8766556777643443322113595799943887712321----23433981454036776700------1152032157
Q gi|254780779|r 136 LNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQ----EARRLRIPIVAVVDTNSNPD------LVDYVIPGND 205 (278)
Q Consensus 136 ~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~----EA~kl~IPvIaivDTn~dp~------~idypIP~ND 205 (278)
.-.-+|+|+++++.-...... ....-+..+|-| |.||. .+|+.|.|+
T Consensus 76 -------------------~~~~aDlil~iG~~~~~~~~~~~~~~~~~~~~~vi~i---d~d~~~~~~~~~~d~~i~~d- 132 (179)
T 2c31_A 76 -------------------ALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQI---DIQANEMDSNQPIAAPVVGD- 132 (179)
T ss_dssp -------------------HHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEE---ESCGGGTTSSSCCSEEEESC-
T ss_pred -------------------CCCCCCEECCCCCCCCEEECCCCCCCCCCCCCCEEEE---CCCCCCCCCCCCCCCCCCHH-
T ss_conf -------------------2245512102366520001156321001244303641---13543122345432000022-
Q ss_pred CCHHHHHHHHH
Q ss_conf 72689999999
Q gi|254780779|r 206 DSSRSIALFCD 216 (278)
Q Consensus 206 ds~~si~l~~~ 216 (278)
...++.-+..
T Consensus 133 -~~~~l~~L~~ 142 (179)
T 2c31_A 133 -IKSAVSLLRK 142 (179)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
T ss_conf -5889999998
No 55
>>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} (A:1-106,A:224-276)
Probab=78.15 E-value=3 Score=22.21 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=24.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 3595799943887712321234339814540
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
+-+|.+|+.....+. .+.++...+||+|.+
T Consensus 62 ~~vdGiIi~~~~~~~-~~~~l~~~~iPvV~i 91 (159)
T 3jy6_A 62 RGFDGLILQSFSNPQ-TVQEILHQQMPVVSV 91 (159)
T ss_dssp TTCSEEEEESSCCHH-HHHHHHTTSSCEEEE
T ss_pred CCCCCCCCCCCCHHH-HHHHHHHCCCCEECC
T ss_conf 388853124620047-788888628730002
No 56
>>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3} (A:1-193)
Probab=77.94 E-value=5.5 Score=20.50 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=34.2
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEECC
Q ss_conf 957999438877----123212343398145403677670--01152032157
Q gi|254780779|r 159 PDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPGND 205 (278)
Q Consensus 159 P~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~ND 205 (278)
-|++|++....+ ..+++.|+..|+|+|+|.+...+| ...|+.|..+.
T Consensus 92 ~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~l~~~ad~~i~~~~ 144 (193)
T 3fj1_A 92 RALCLAVSQSGKSPDIVAXTRNAGRDGALCVALTNDAASPLAGVSAHTIDIHA 144 (193)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEECCC
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 84999997789974899999998775994999844799870103463310246
No 57
>>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} (A:1-112,A:258-309)
Probab=77.85 E-value=0.85 Score=25.71 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=34.5
Q ss_pred CCCCCEEEEEC--CCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHH
Q ss_conf 13595799943--8877123212343398145403677670011520321577268
Q gi|254780779|r 156 GGLPDLMFVVD--TNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSR 209 (278)
Q Consensus 156 ~~lP~~iiv~d--~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~ 209 (278)
.+-+|+|+|.- +....-.++.|...|||+|.+ |+..+...+++...-|-.+-+
T Consensus 57 ~~~vDgIIi~~~d~~~~~~~i~~a~~agIPvV~v-n~~~~~~~~~~v~~d~~~~g~ 111 (164)
T 2fvy_A 57 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFF-NKEPSRKALDSYDKAYYVGTD 111 (164)
T ss_dssp HTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEE-SSCCCHHHHHTCTTEEEEECC
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHCCCCEECC-CCCCCCCCCCCCCCCEEEECC
T ss_conf 7599889971321013699999998459630003-654444323357874078414
No 58
>>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} (A:109-244,A:291-303)
Probab=77.83 E-value=4.6 Score=20.97 Aligned_cols=34 Identities=9% Similarity=-0.074 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCE----EEEECCC
Q ss_conf 359579994388771232123433981----4540367
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIP----IVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IP----vIaivDT 190 (278)
..|+++|+.+-..-.-+++.+...|+| +||+-|+
T Consensus 80 ~~~~ai~~~~d~~a~gv~~al~~~g~~~~i~vvg~d~~ 117 (149)
T 3d02_A 80 PDLKAVVSFGSNGPIGAGRAVKEKRAKNKVAVYGXXIP 117 (149)
T ss_dssp TTEEEEEESSTTHHHHHHHHHHHTTCTTTCEEEECCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCH
T ss_conf 98518995685899999999997699998389960885
No 59
>>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:58-160,A:293-340)
Probab=77.74 E-value=4.5 Score=21.06 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=37.0
Q ss_pred CCCCEEEEECCCCCCH-HHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCH
Q ss_conf 3595799943887712-321234339814540367767001152032157726
Q gi|254780779|r 157 GLPDLMFVVDTNREKL-AIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSS 208 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~-Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~ 208 (278)
+-+|.|+++....+.. ..+.+...+||+|.+ |...+-..++|...-|-+++
T Consensus 56 ~~vDGIIi~~~~~~~~~~~~~l~~~~IPvV~i-d~~~~~~~~~~V~~dn~~~~ 107 (151)
T 1qpz_A 56 KRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVM-DWGEAKADFTDAVIDNKDSL 107 (151)
T ss_dssp TTCSEEEECCSCCCHHHHHHHHTTTTSCEEEE-EESSCCCSSSEEEECCHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCEEECCHHHH
T ss_conf 48874898146787277888876148877983-36766677774453349999
No 60
>>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z} (A:1-107,A:239-285)
Probab=77.63 E-value=3.1 Score=22.09 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=40.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC-CCHHHHHHHHHHHHH
Q ss_conf 13595799943887712321234339814540367767001152032157-726899999999999
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND-DSSRSIALFCDLVAS 220 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND-ds~~si~l~~~~i~~ 220 (278)
.+.+|.+|++.+..+.. +.++.+.+||+|.+-+ +.+...++|.-+-.. -.++++.|++..+-.
T Consensus 62 ~~~vDGIII~~~~~~~~-~~~~l~~~IPvVlid~-~~~~~~~~~V~~D~~~~~~~~~~~~~~~~~~ 125 (154)
T 3c3k_A 62 GKMVDGVITMDALSELP-ELQNIIGAFPWVQCAE-YDPLSTVSSVSIDSEQIGMKAVSLLLEQIHS 125 (154)
T ss_dssp TTCCSEEEECCCGGGHH-HHHHHHTTSSEEEESS-CCTTSSSCEEECCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCCHH-HHHHHCCCCCEEEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 04554233212343289-9985036887899840-4787776632446999999999999999719
No 61
>>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* (A:1-104,A:238-280)
Probab=76.42 E-value=3.3 Score=21.88 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=37.6
Q ss_pred CCCCCEEEEECC--CCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 135957999438--877123212343398145403677670011520321577268999999999999999
Q gi|254780779|r 156 GGLPDLMFVVDT--NREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAID 224 (278)
Q Consensus 156 ~~lP~~iiv~d~--~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~ 224 (278)
.+.+|.+++.-+ ..-.-+++++...|||+|.+ |+..++......|-.|. ++.+.++-+++-
T Consensus 55 ~~~vDGIIi~~~d~~~~~~~i~~l~~~gIPVV~v-d~~~~~~~~~~~Vg~D~-------~~~~~~~~~~~~ 117 (147)
T 2h3h_A 55 AEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTL-DTDSPDSGRYVYIGTDP-------YMMGYLSVTVLY 117 (147)
T ss_dssp HTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEECCH-------HHHHHHHHHHHH
T ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCEEECCCHH-------HHHHHHHHHHHH
T ss_conf 7699999997250344248999987435624999-33577654200025529-------999999999999
No 62
>>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:1-163,A:294-332)
Probab=76.36 E-value=6 Score=20.22 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=35.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC
Q ss_conf 3595799943887712321234339814540367767001152032157
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND 205 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND 205 (278)
+-+|.+|++.+......+.++.+.|||+|-+-+. +....+|.=++|
T Consensus 118 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvVlid~~---~~~~~~~~V~~D 163 (202)
T 2o20_A 118 KQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTI---DGDKEIPSVNID 163 (202)
T ss_dssp TTCSEEEECSSCCCHHHHHHHHHHCCCEEEESCC---CTTSCSCEEECC
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCC---CCCCCCCCCCCC
T ss_conf 0756540101345367776631577877863035---544567755676
No 63
>>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} (A:1-105)
Probab=76.33 E-value=6 Score=20.21 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=52.8
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCE-ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 07881699607823579999998633983-14233458732342666555677899887630121267746788766556
Q gi|254780779|r 64 ARGGRILFVATKSQASDCVMEAAKRSAQY-CVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKR 142 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~i~~~A~~~~~~-yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~ 142 (278)
.++++|+|+|........+......-|.. ++...=... .....|+...-..+.+..
T Consensus 2 ~~~k~v~viG~G~sG~salA~~L~~~G~~V~~~D~~~~~------------~~~~~L~~~gi~~~~g~~----------- 58 (105)
T 3eag_A 2 NAXKHIHIIGIGGTFXGGLAAIAKEAGFEVSGCDAKXYP------------PXSTQLEALGIDVYEGFD----------- 58 (105)
T ss_dssp -CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCT------------THHHHHHHTTCEEEESCC-----------
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCC------------HHHHHHHHCCCEEECCCC-----------
T ss_conf 977789999857899999999999789939999799995------------789999978899987889-----------
Q ss_pred HHHHHHHHHHHHH-CCCCCEEEEEC-CCCCCHHHHHHHHCCCEEEEECC
Q ss_conf 7776434433221-13595799943-88771232123433981454036
Q gi|254780779|r 143 DKLKRALDGIRDM-GGLPDLMFVVD-TNREKLAIQEARRLRIPIVAVVD 189 (278)
Q Consensus 143 ~kl~k~lgGi~~m-~~lP~~iiv~d-~~~e~~Av~EA~kl~IPvIaivD 189 (278)
..+. -.-+|+||+.. ...++-.+.+|+.+||||++-++
T Consensus 59 ---------~~~~~~~~~d~vV~SPgi~~~~p~l~~A~~~gi~I~seiE 98 (105)
T 3eag_A 59 ---------AAQLDEFKADVYVIGNVAKRGXDVVEAILNLGLPYISGPQ 98 (105)
T ss_dssp ---------GGGGGSCCCSEEEECTTCCTTCHHHHHHHHTTCCEEEHHH
T ss_pred ---------HHHCCCCCCCEEEEEEECCCCCHHHHHHHHCCEEEEECCH
T ss_conf ---------7884665564222332013220256776523325763110
No 64
>>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:1-110,A:243-288)
Probab=75.99 E-value=6.2 Score=20.16 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=43.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 359579994388771232123433981454036776700115203215772689999999999999999
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDG 225 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g 225 (278)
+.+|.+|++.+..+...+..+.+.+||+|.+-+. +...+++-=+.| |.|--+.+++|.+.-
T Consensus 65 ~~VDGIIi~~~~~~~~~l~~l~~~~iPvVlid~~---~~~~~~~~V~~D-----~~~~~~~~~~~~~~~ 125 (156)
T 3gv0_A 65 GSADGVIISKIEPNDPRVRFXTERNXPFVTHGRS---DXGIEHAFHDFD-----IKLAGRELAKALLAR 125 (156)
T ss_dssp TCCSEEEEESCCTTCHHHHHHHHTTCCEEEESCC---CSSCCCEEEEEC-----HHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEECCCC---CCCCCCCEEECC-----HHHHHHHHHHHHHHH
T ss_conf 8977798740233216778777514972200113---579987668535-----999999999999999
No 65
>>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} (A:169-300)
Probab=75.58 E-value=5.9 Score=20.27 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=57.1
Q ss_pred HHHHHHHHHCCC-CEEEEEECCHH----HH---HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999861078-81699607823----57---99999986339831423345873234266655567789988763012
Q gi|254780779|r 55 ALQVISDTVARG-GRILFVATKSQ----AS---DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKE 126 (278)
Q Consensus 55 A~~~i~~i~~~g-g~ILFVgTk~~----~~---~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~ 126 (278)
+...++.+..+| .+|.|++.... .. .-..+.....|.++....+..+....... ...+
T Consensus 5 ~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------- 70 (132)
T 3kjx_A 5 GREXAQAILKAGYRRIGFXGTKXPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKG-REXT------------- 70 (132)
T ss_dssp HHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHH-HHHH-------------
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCHH-------------
T ss_conf 99999999983998641006666556216778888898999729863211000113221233-1102-------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEE---EEECCCCC
Q ss_conf 1267746788766556777643443322113595799943887712321234339814---54036776
Q gi|254780779|r 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPI---VAVVDTNS 192 (278)
Q Consensus 127 ~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPv---IaivDTn~ 192 (278)
...+ .....|+++|+.+-..-.-+++.++++||.| |+++--|.
T Consensus 71 -------------------~~~~----~~~~~~~ai~~~~d~~a~~~l~~l~~~gi~vP~di~iigfd~ 116 (132)
T 3kjx_A 71 -------------------QAXL----ERSPDLDFLYYSNDXIAAGGLLYLLEQGIDIPGQIGLAGFNN 116 (132)
T ss_dssp -------------------HHHH----HHSTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBC
T ss_pred -------------------HHHH----CCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf -------------------2320----256541245326721567899999986998788759999688
No 66
>>3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str} (A:)
Probab=75.32 E-value=6.4 Score=20.04 Aligned_cols=47 Identities=11% Similarity=0.215 Sum_probs=35.3
Q ss_pred CCCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEEC
Q ss_conf 5957999438877----123212343398145403677670--0115203215
Q gi|254780779|r 158 LPDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPGN 204 (278)
Q Consensus 158 lP~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~N 204 (278)
-.|++|++....+ ..++++|++.|+|||+|.|...+| ...|+.|++.
T Consensus 92 ~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~l~~~ad~~i~~~ 144 (201)
T 3fxa_A 92 KEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVS 144 (201)
T ss_dssp TTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECC
T ss_conf 88889996799982689999999998399189983699996423578668654
No 67
>>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} (A:171-304)
Probab=74.69 E-value=6.7 Score=19.94 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=64.7
Q ss_pred HHHHHHHHCCC-CEEEEEECCHH----HH---HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999861078-81699607823----57---999999863398314233458732342666555677899887630121
Q gi|254780779|r 56 LQVISDTVARG-GRILFVATKSQ----AS---DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 56 ~~~i~~i~~~g-g~ILFVgTk~~----~~---~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
...+..+.++| .+|+||+.... .. .-..+.....+..+-...|..+..+-+......+.++..
T Consensus 6 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 76 (134)
T 3e3m_A 6 YDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQ--------- 76 (134)
T ss_dssp HHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------
T ss_conf 99999999849974999817875554079998605899986202654222111120245555566666665---------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEE---EEECCCCCCC
Q ss_conf 267746788766556777643443322113595799943887712321234339814---5403677670
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPI---VAVVDTNSNP 194 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPv---IaivDTn~dp 194 (278)
-...|++||+.+-.--.-+++.+..+|+.| |+|+--|..|
T Consensus 77 ---------------------------~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~iigfd~~~ 119 (134)
T 3e3m_A 77 ---------------------------EYPDTDCIFCVSDMPAFGLLSRLKSIGVAVPEQVSVVGFGNFE 119 (134)
T ss_dssp ---------------------------HCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEECSSCCH
T ss_pred ---------------------------HCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCH
T ss_conf ---------------------------1467506986067115658899986499889846999989818
No 68
>>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A* (A:217-375)
Probab=74.44 E-value=6.8 Score=19.90 Aligned_cols=100 Identities=8% Similarity=0.023 Sum_probs=58.1
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHH---HHHHHHHHHHCCCEEC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999861078816996078235---7999999863398314---2334587323426665556778998876301212
Q gi|254780779|r 55 ALQVISDTVARGGRILFVATKSQA---SDCVMEAAKRSAQYCV---NSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQ 128 (278)
Q Consensus 55 A~~~i~~i~~~gg~ILFVgTk~~~---~~~i~~~A~~~~~~yV---~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~ 128 (278)
...-+.+...+.++|.|+|..... .+.-.++.+.++.+.. ...|..|.+-+
T Consensus 4 ~~~~~~~~l~~a~~i~i~G~G~s~~~A~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~----------------------- 60 (159)
T 2zj3_A 4 EIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLAL----------------------- 60 (159)
T ss_dssp HHHHHHHHHTTCSEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGG-----------------------
T ss_pred HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHCEEEEEECHHHHHCCCHHH-----------------------
T ss_conf 456789997535455475687437899999999988635134772257640752665-----------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----HHHHHHHHCCCEEEEECCCCCCCH--HCCCEE
Q ss_conf 6774678876655677764344332211359579994388771-----232123433981454036776700--115203
Q gi|254780779|r 129 GFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK-----LAIQEARRLRIPIVAVVDTNSNPD--LVDYVI 201 (278)
Q Consensus 129 ~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~-----~Av~EA~kl~IPvIaivDTn~dp~--~idypI 201 (278)
+. -=|++|++....+. .+++.|++.|+|+|+|++.+.+|- ..|+.+
T Consensus 61 --------------------------~~-~~d~vi~is~~g~t~e~~~~~~~~~k~~g~~vi~it~~~~s~l~~~~d~~l 113 (159)
T 2zj3_A 61 --------------------------VD-KLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICDKEDTETIKNTKRTI 113 (159)
T ss_dssp --------------------------CS-TTSCEEEEECSSTTHHHHHHHHHHHHHTTCCCEEEEETTCHHHHHHCSSEE
T ss_pred --------------------------CC-CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCEEE
T ss_conf --------------------------07-997189997573147889999999997799689998787223331457089
Q ss_pred EEC
Q ss_conf 215
Q gi|254780779|r 202 PGN 204 (278)
Q Consensus 202 P~N 204 (278)
+.-
T Consensus 114 ~~~ 116 (159)
T 2zj3_A 114 KVP 116 (159)
T ss_dssp EEC
T ss_pred ECC
T ss_conf 858
No 69
>>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:1-108,A:240-290)
Probab=74.19 E-value=3.6 Score=21.69 Aligned_cols=38 Identities=5% Similarity=0.009 Sum_probs=31.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 135957999438877123212343398145403677670
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNP 194 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp 194 (278)
.+.+|.+++..+..+...+.++.+.+||+|.+ |...++
T Consensus 63 ~~~vDGIIi~~~~~~~~~i~~l~~~gIPvVli-d~~~~~ 100 (159)
T 3clk_A 63 ERPVXGILLLSIALTDDNLQLLQSSDVPYCFL-SXGFDD 100 (159)
T ss_dssp SSCCSEEEEESCC----CHHHHHCC--CEEEE-SCC--C
T ss_pred HCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCC-CCCCCC
T ss_conf 56954675200001356899987410211124-543344
No 70
>>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} (A:1-112,A:246-289)
Probab=74.18 E-value=4.9 Score=20.78 Aligned_cols=48 Identities=17% Similarity=0.389 Sum_probs=32.2
Q ss_pred CCCCCEEEEECCC--CCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEEC
Q ss_conf 1359579994388--771232123433981454036776700115203215
Q gi|254780779|r 156 GGLPDLMFVVDTN--REKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGN 204 (278)
Q Consensus 156 ~~lP~~iiv~d~~--~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~N 204 (278)
.+.+|++++.... ....+++.+...|||+|.+ |+..++...+..+-.|
T Consensus 63 ~~~vdgiIi~~~~~~~~~~~i~~l~~~gIPVV~i-d~~~~~~~~~~~v~~d 112 (156)
T 3brs_A 63 KRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVI-DSGMKQDIADITVATD 112 (156)
T ss_dssp HTCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEE-SSCCSSCCCSEEEECC
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCEEEEEC
T ss_conf 7699999997872010289999886138742001-3433468874399832
No 71
>>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6- phosphate transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A* (A:207-367)
Probab=73.48 E-value=7.1 Score=19.75 Aligned_cols=107 Identities=7% Similarity=-0.040 Sum_probs=59.0
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHH---HHHHHHHHHHCCCE---ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999861078816996078235---79999998633983---142334587323426665556778998876301212
Q gi|254780779|r 55 ALQVISDTVARGGRILFVATKSQA---SDCVMEAAKRSAQY---CVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQ 128 (278)
Q Consensus 55 A~~~i~~i~~~gg~ILFVgTk~~~---~~~i~~~A~~~~~~---yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~ 128 (278)
..+-+.+...+.++|.|+|..... ...-.++.+-++.+ +-..-+..|.+-+
T Consensus 5 ~~~~~~~~l~~a~~I~i~G~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------- 61 (161)
T 2poc_A 5 IKDLCNSSLNDQKSLLLLGRGYQFATALEGALKIKEISYMHSEGVLAGELKHGILAL----------------------- 61 (161)
T ss_dssp HHHHHHSGGGGCSEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEETTCC------------------------------
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCEECCCCCCHHHHHCCHHHH-----------------------
T ss_conf 788888752356527997687885057899999862257314457789986040541-----------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC---CCC--CHHHHHHHHCCCEEEEECCCCCCC--HHCCCEE
Q ss_conf 677467887665567776434433221135957999438---877--123212343398145403677670--0115203
Q gi|254780779|r 129 GFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDT---NRE--KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVI 201 (278)
Q Consensus 129 ~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~---~~e--~~Av~EA~kl~IPvIaivDTn~dp--~~idypI 201 (278)
+ .--|++|++.. ..| ..+++.|++.|+|+|+|.+.+.+| ...|+.+
T Consensus 62 --------------------------~-~~~d~vi~iS~sg~t~e~~~~~~~~~k~~g~~vi~It~~~~s~l~~~~~~~l 114 (161)
T 2poc_A 62 --------------------------V-DEDLPIIAFATRDSLFPKVMSAIEQVTARDGRPIVICNEGDAIISNDKVHTT 114 (161)
T ss_dssp -------------------------------CCEEEECCGGGCCHHHHHHHHHHHHTTCCCEEEEETTCCSCC---CCEE
T ss_pred --------------------------C-CCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHCCCCCCCEE
T ss_conf --------------------------5-6997447883587103444547999996698189999378401034554338
Q ss_pred --EECCCCHHHH
Q ss_conf --2157726899
Q gi|254780779|r 202 --PGNDDSSRSI 211 (278)
Q Consensus 202 --P~NDds~~si 211 (278)
|...+...+.
T Consensus 115 ~~~~~~~~~~~~ 126 (161)
T 2poc_A 115 LEVPETVDCLQG 126 (161)
T ss_dssp EEECCCCGGGHH
T ss_pred EECCCCCHHHHH
T ss_conf 972796355789
No 72
>>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} (A:1-108,A:251-276)
Probab=73.28 E-value=2.1 Score=23.13 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=32.6
Q ss_pred CCCCCEEEEECC--CCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC
Q ss_conf 135957999438--87712321234339814540367767001152032157
Q gi|254780779|r 156 GGLPDLMFVVDT--NREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND 205 (278)
Q Consensus 156 ~~lP~~iiv~d~--~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND 205 (278)
.+.+|.||+... ....-+++.+.+.+||+|.+ |+..+....++.+..++
T Consensus 56 ~~~vDGIIi~~~~~~~~~~~i~~~~~~~iPVV~i-d~~~~~~~~~~vv~~d~ 106 (134)
T 2vk2_A 56 AQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLL-DRSIDVKDKSLYMTTVT 106 (134)
T ss_dssp HHTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEE-SSCCCCSCGGGSSEEEE
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEE-CCCCCCCCCCCCCEEEE
T ss_conf 7599999983256541168899998619975774-45445555666520584
No 73
>>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:59-159,A:294-316)
Probab=72.94 E-value=6.5 Score=20.00 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.8
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 13595799943887712321234339814540367
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDT 190 (278)
.+.+|.++++.+....-.+.++...+||+|.+-..
T Consensus 56 ~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~ 90 (124)
T 2hsg_A 56 GKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASI 90 (124)
T ss_dssp CCSSCCEEECCSSCCHHHHHHHTTSSSCEEEESCC
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 32753697214431034566653100223332234
No 74
>>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} (A:118-252)
Probab=72.58 E-value=7.5 Score=19.62 Aligned_cols=109 Identities=6% Similarity=-0.040 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHH------HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999861078816996078235------79999998633983142334587323426665556778998876301
Q gi|254780779|r 52 LQKALQVISDTVARGGRILFVATKSQA------SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNK 125 (278)
Q Consensus 52 L~~A~~~i~~i~~~gg~ILFVgTk~~~------~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~ 125 (278)
-+.|...+.+.....++|+||+..+.. .+-+.+..+..+.+.....+.+|..+.-.... .+ .
T Consensus 5 g~~a~~~l~~~~~g~~~i~~i~g~~~~~~~~~R~~Gf~~~l~e~~~~~~~~~~~~~~~~~~~~~~-~~---~-------- 72 (135)
T 2rjo_A 5 GEETATQLFKSXGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDFQVADWNSQKAFPI-XQ---A-------- 72 (135)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHH-HH---H--------
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHH-HH---H--------
T ss_conf 99999998874566404641367865216788888999999874014531100154234899999-99---9--------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEE-EEECCCCCCCHHC
Q ss_conf 21267746788766556777643443322113595799943887712321234339814-5403677670011
Q gi|254780779|r 126 ENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPI-VAVVDTNSNPDLV 197 (278)
Q Consensus 126 ~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPv-IaivDTn~dp~~i 197 (278)
. +......|+++|+.+-..-.-+++.++..|||= |.++--|..|...
T Consensus 73 -----------~--------------~l~~~~~~~~i~~~~d~~a~g~~~al~~~gi~~~i~vvg~d~~~~~~ 120 (135)
T 2rjo_A 73 -----------W--------------XTRFNSKIKGVWAANDDXALGAIEALRAEGLAGQIPVTGXDGTQPGL 120 (135)
T ss_dssp -----------H--------------HHHHGGGEEEEEESSHHHHHHHHHHHHHTTCBTTBCEECSBCCHHHH
T ss_pred -----------H--------------HHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHH
T ss_conf -----------9--------------86467767689977868999999999976998674378467989999
No 75
>>3etn_A Putative phosphosugar isomerase involved in capsule formation; YP_209877.1, structural genomics; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343} (A:)
Probab=72.05 E-value=7.7 Score=19.54 Aligned_cols=44 Identities=14% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCEEEEECCCCCCH----HHHHHH--HCCCEEEEECCCCCCC--HHCCCEEE
Q ss_conf 95799943887712----321234--3398145403677670--01152032
Q gi|254780779|r 159 PDLMFVVDTNREKL----AIQEAR--RLRIPIVAVVDTNSNP--DLVDYVIP 202 (278)
Q Consensus 159 P~~iiv~d~~~e~~----Av~EA~--kl~IPvIaivDTn~dp--~~idypIP 202 (278)
=|+||++....+.- |++.|+ ..|+|+|+|.+...+| ...|+.|.
T Consensus 107 ~dlvI~iS~sG~t~~~~~~~~~ak~~~~g~~vi~IT~~~~s~l~~~ad~~i~ 158 (220)
T 3etn_A 107 NDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLS 158 (220)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCC
T ss_conf 7559996589775313668999873245781798737985367753010022
No 76
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:1-110,A:244-265)
Probab=71.97 E-value=5.6 Score=20.43 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 3595799943887712321234339814540
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
+.+|.+++.....+..+++.+.+.+||+|.+
T Consensus 66 ~~vDGiIi~~~~~~~~~i~~l~~~~IPvV~i 96 (132)
T 2rgy_A 66 RDCDGVVVISHDLHDEDLDELHRXHPKXVFL 96 (132)
T ss_dssp TTCSEEEECCSSSCHHHHHHHHHHCSSEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEE
T ss_conf 6999898522321047899874037642035
No 77
>>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} (A:1-104,A:237-271)
Probab=71.63 E-value=7.9 Score=19.48 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=32.2
Q ss_pred CCCCCEEEEECCCC--CCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC
Q ss_conf 13595799943887--712321234339814540367767001152032157
Q gi|254780779|r 156 GGLPDLMFVVDTNR--EKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND 205 (278)
Q Consensus 156 ~~lP~~iiv~d~~~--e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND 205 (278)
.+-||.+|+..... ..-.++++...|||+|.+- ...+....++.+..|-
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~l~~l~~~gIPvV~id-~~~~~~~~~~~v~~d~ 105 (139)
T 2dri_A 55 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLD-RQATKGEVVSHIASDP 105 (139)
T ss_dssp TTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEES-SCCSSSCCSEEEEECH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCCCCCEEEEECH
T ss_conf 61876443212222231689999986377532356-5555455423785229
No 78
>>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, enzyme, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} (A:205-389,A:582-616)
Probab=71.28 E-value=8 Score=19.43 Aligned_cols=136 Identities=12% Similarity=0.049 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999861078816996078---2357999999863398314233458732342666555677899887630121
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
.+.+++..|. ....=++++|-. ..+.+.+.++|+++|.|+++.----|.+-+=. -..-+.+
T Consensus 11 ~i~~~~~~L~---~AkrPvIi~G~g~~~~~a~~~l~~Lae~lgiPV~~t~~~kg~~~~~h-------------P~~~G~~ 74 (220)
T 2pan_A 11 QIEKAVEXLI---QAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLXGWGCIPDDH-------------ELXAGXV 74 (220)
T ss_dssp HHHHHHHHHH---TCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTTTSSCTTS-------------TTBCCCC
T ss_pred HHHHHHHHHH---CCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-------------CCCCCCC
T ss_conf 8999999997---38982899777501130899999999720787323435567532333-------------2323223
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH--HHHHCCCEEEEECCCCCCCHHCCCEEEEC
Q ss_conf 267-746788766556777643443322113595799943887712321--23433981454036776700115203215
Q gi|254780779|r 128 QGF-TKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQ--EARRLRIPIVAVVDTNSNPDLVDYVIPGN 204 (278)
Q Consensus 128 ~~~-tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~--EA~kl~IPvIaivDTn~dp~~idypIP~N 204 (278)
.+. .......+ -+-.|+|+++++........ ....-+-++|-+ +.||..+++-.+..
T Consensus 75 ~g~~~~~~~~~~-----------------l~~aDlIL~iG~~l~~~~t~~~~~~~~~~~iI~I---~~d~~~l~~~~~~d 134 (220)
T 2pan_A 75 GLQTAHRYGNAT-----------------LLASDXVFGIGNRFANRHTGSVEKYTEGRKIVHI---DIEPTQIGRVLCPD 134 (220)
T ss_dssp SSSSCCHHHHHH-----------------HHHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEE---ESCGGGTTSSSCCS
T ss_pred CCCCCCHHHHHH-----------------CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEE---ECCHHHHCCCCCCC
T ss_conf 454442234430-----------------3433113441445554343221235889818999---78657600244564
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 772689999999999999
Q gi|254780779|r 205 DDSSRSIALFCDLVASAA 222 (278)
Q Consensus 205 Dds~~si~l~~~~i~~ai 222 (278)
---...+.-++..|.+.+
T Consensus 135 v~i~gD~~~~L~~L~~~l 152 (220)
T 2pan_A 135 LGIVSDAKAALTLLVEVA 152 (220)
T ss_dssp SCEECCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 000101678888776556
No 79
>>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} (A:1-111,A:250-293)
Probab=70.84 E-value=8.2 Score=19.37 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCC--CCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHH
Q ss_conf 3595799943887--7123212343398145403677670011520321577268999
Q gi|254780779|r 157 GLPDLMFVVDTNR--EKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIA 212 (278)
Q Consensus 157 ~lP~~iiv~d~~~--e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~ 212 (278)
+.||+++|+.+.. ..-.+.++...|||+|.+-.. .+....+..+ -||+-....
T Consensus 63 ~~vdGiII~p~~~~~~~~~l~~L~~~gIPvV~id~~-~~~~~~~~vv--~dd~~~~~~ 117 (155)
T 3l6u_A 63 LKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRX-IRSDAVVSSI--TSNAEEXXK 117 (155)
T ss_dssp TTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSC-CCCTTCSEEE--EECHHHHHH
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCC-CCCCCCCCEE--CCCHHHHHH
T ss_conf 699899971566301599999999769929998877-8877633056--246999999
No 80
>>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A (A:31-225)
Probab=70.71 E-value=7.5 Score=19.61 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=26.5
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHH-HH----CCCEEEEECCCC
Q ss_conf 211359579994388771232123-43----398145403677
Q gi|254780779|r 154 DMGGLPDLMFVVDTNREKLAIQEA-RR----LRIPIVAVVDTN 191 (278)
Q Consensus 154 ~m~~lP~~iiv~d~~~e~~Av~EA-~k----l~IPvIaivDTn 191 (278)
.....||+++|=.-..-+.++.+. .. ++||+||++=..
T Consensus 69 ~~~~~PDliliDGg~~~~~~~~~i~~~lg~~~~iP~IgvaK~~ 111 (195)
T 2w36_A 69 KLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKSR 111 (195)
T ss_dssp TCCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEESSC
T ss_pred HCCCCCCEEEECCCEEECCCCCCHHHHEEEECCCCEEEEECCE
T ss_conf 5578999999838554368766453301231398876343343
No 81
>>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:1-110,A:245-289)
Probab=69.72 E-value=2.7 Score=22.49 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=33.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCC
Q ss_conf 1359579994388771232123433981454036776700115
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVD 198 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~id 198 (278)
.+.+|.+|++.+..+...+.+..+.+||+|.+-....+...+-
T Consensus 66 ~~~vDGIIi~~~~~~d~~~~~l~~~~iPiVlid~~~~~~~~~~ 108 (155)
T 3g85_A 66 ENSFDAAIIANISNYDLEYLNKASLTLPIILFNRLSNKYSSVN 108 (155)
T ss_dssp TTCCSEEEESSCCHHHHHHHHHCCCSSCEEEESCCCSSSEEEE
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEE
T ss_conf 4797879855887882999999757998899534677578899
No 82
>>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} (A:1-131)
Probab=69.36 E-value=4.6 Score=20.95 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=26.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 95799943887712321234339814540
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
||+||..+.....-.+....++|||++.+
T Consensus 58 PDlvi~~~~~~~~~~~~~l~~~~i~v~~~ 86 (131)
T 1n2z_A 58 PDLVIAWRGGNAERQVDQLASLGIKVMWV 86 (131)
T ss_dssp CSEEEECTTTSCHHHHHHHHHHTCCEEEC
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCEEEEE
T ss_conf 97488305777288999998529869981
No 83
>>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} (A:211-368)
Probab=69.00 E-value=8.9 Score=19.12 Aligned_cols=44 Identities=20% Similarity=0.085 Sum_probs=31.5
Q ss_pred CCEEEEECCCCCC----H-HHHHHHHCCCEEEEECCCCCCCH--HCCCEEE
Q ss_conf 9579994388771----2-32123433981454036776700--1152032
Q gi|254780779|r 159 PDLMFVVDTNREK----L-AIQEARRLRIPIVAVVDTNSNPD--LVDYVIP 202 (278)
Q Consensus 159 P~~iiv~d~~~e~----~-Av~EA~kl~IPvIaivDTn~dp~--~idypIP 202 (278)
-|++|++....+. . +++-|+..|+|+|+|.|.+.+|- ..|+.+.
T Consensus 63 ~d~vi~is~~g~t~e~~~~~~~~~k~~g~~~i~it~~~~s~~~~~~d~~l~ 113 (158)
T 1moq_A 63 DMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIE 113 (158)
T ss_dssp TSCEEEESCCHHHHHHHHHHHHHTGGGTCCEEEEEEGGGCCCCBTTEEEEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEE
T ss_conf 973899705866889999999999964992999966872224557756997
No 84
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:164-296)
Probab=69.00 E-value=8.9 Score=19.12 Aligned_cols=99 Identities=10% Similarity=0.144 Sum_probs=60.2
Q ss_pred HHHHHHHHHCCC-CEEEEEECCHHH------HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999861078-816996078235------7999999863398314233458732342666555677899887630121
Q gi|254780779|r 55 ALQVISDTVARG-GRILFVATKSQA------SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 55 A~~~i~~i~~~g-g~ILFVgTk~~~------~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
+...++.+.++| .+|.||+..... .....+.....+.++-...+..+...-... ...+..+
T Consensus 6 ~~~a~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------- 73 (133)
T 3dbi_A 6 SFNAVAELINAGHQEIAFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASG-AEGVEXL----------- 73 (133)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHH-HHHHHHH-----------
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHH-HHHHHHH-----------
T ss_conf 9999999998499859999789998669999999999999839998831476157646779-9999999-----------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 26774678876655677764344332211359579994388771232123433981------4540367
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
-.....|+++|+.+-.-=.-+++.++++||. ++|+-|+
T Consensus 74 -------------------------~~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~i~~~d~~ 117 (133)
T 3dbi_A 74 -------------------------LERGAKFSALVASNDDXAIGAXKALHERGVAVPEQVSVIGFDDI 117 (133)
T ss_dssp -------------------------HHTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred -------------------------HHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf -------------------------83488864999678999999999999759998998699998981
No 85
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:122-254)
Probab=69.00 E-value=8.9 Score=19.12 Aligned_cols=99 Identities=9% Similarity=0.140 Sum_probs=59.6
Q ss_pred HHHHHHHHHCCC-CEEEEEECCHHH------HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999861078-816996078235------7999999863398314233458732342666555677899887630121
Q gi|254780779|r 55 ALQVISDTVARG-GRILFVATKSQA------SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 55 A~~~i~~i~~~g-g~ILFVgTk~~~------~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
+...++.+.++| .+|.||+..... .....+.....+.++-...+..+...-... ...+..
T Consensus 6 ~~~a~~~l~~~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------ 72 (133)
T 3brq_A 6 SFNAVAELINAGHQEIAFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASG-AEGVEX------------ 72 (133)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHH-HHHHHH------------
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHH-HHHHHH------------
T ss_conf 1134455434036559999577556530335459999998639877720353267652105-677799------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 26774678876655677764344332211359579994388771232123433981------4540367
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
+-.....|+++|+.+-.-=.-+++.++++||. ++|+-|+
T Consensus 73 ------------------------~~~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~i~~~d~~ 117 (133)
T 3brq_A 73 ------------------------LLERGAKFSALVASNDDXAIGAXKALHERGVAVPEQVSVIGFDDI 117 (133)
T ss_dssp ------------------------HHTC--CCSEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCC
T ss_pred ------------------------HHHCCCCCCCCCCCCHHHHHHHEHHHHHCCCCCCCCCCCCCCCCC
T ss_conf ------------------------985589987223588088842244366549878864000055671
No 86
>>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-113)
Probab=68.68 E-value=9.1 Score=19.08 Aligned_cols=92 Identities=17% Similarity=0.058 Sum_probs=51.2
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCE-ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 107881699607823579999998633983-1423345873234266655567789988763012126774678876655
Q gi|254780779|r 63 VARGGRILFVATKSQASDCVMEAAKRSAQY-CVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERK 141 (278)
Q Consensus 63 ~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~-yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~ 141 (278)
..++.+|+|+|-.......+.......|.. ++..+=-. .....++..--.-+.+.
T Consensus 9 ~~~~~~v~viGlG~sG~salA~~L~~~G~~V~~~D~~~~-------------~~~~~l~~~gi~~~~g~----------- 64 (113)
T 1j6u_A 9 HHHHXKIHFVGIGGIGXSAVALHEFSNGNDVYGSNIEET-------------ERTAYLRKLGIPIFVPH----------- 64 (113)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC-------------HHHHHHHHTTCCEESSC-----------
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCC-------------HHHHHHHHCCCEEECCC-----------
T ss_conf 468777999988699999999999968995999829999-------------89999998889898798-----------
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEC-CCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 6777643443322113595799943-8877123212343398145403
Q gi|254780779|r 142 RDKLKRALDGIRDMGGLPDLMFVVD-TNREKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 142 ~~kl~k~lgGi~~m~~lP~~iiv~d-~~~e~~Av~EA~kl~IPvIaiv 188 (278)
-..--.-.|+||+.. ...++-.+++|+..||||++=+
T Consensus 65 ----------~~~~~~~~d~vV~SPgi~~~~p~~~~a~~~gi~i~~e~ 102 (113)
T 1j6u_A 65 ----------SADNWYDPDLVIKTPAVRDDNPEIVRARXERVPIENRL 102 (113)
T ss_dssp ----------CTTSCCCCSEEEECTTCCTTCHHHHHHHHTTCCEEEHH
T ss_pred ----------CHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEHH
T ss_conf ----------97887999899988946888899999998599786399
No 87
>>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} (A:1-117,A:253-287)
Probab=68.53 E-value=6.1 Score=20.17 Aligned_cols=63 Identities=2% Similarity=-0.112 Sum_probs=45.8
Q ss_pred CCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 359579994388771----2321234339814540367767001152032157726899999999999
Q gi|254780779|r 157 GLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVAS 220 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ 220 (278)
+-+|.|+++....+. -+++++...|||+|.+ |...++..++|..+-|-.+.+.--+.+.-+.-
T Consensus 60 ~~vDGIIi~~~~~~~~~~~~~i~~l~~~gIPvV~i-d~~~~~~~~~~V~~Dn~~g~~~A~~~~~~~~~ 126 (152)
T 2rjo_A 60 KTGGNLVLNVDPNDSADARVIVEACSKAGAYVTTI-WNKPKDLHPWDYNPNYVAHLSYDPFWLGGIGL 126 (152)
T ss_dssp HTTTCEEEEECCSSHHHHHHHHHHHHHHTCEEEEE-SCCCTTCCGGGGTTTEEEEEECCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEE-CCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
T ss_conf 59998999836642100147788999739878984-15565432223578721466032999999999
No 88
>>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435} (A:1-127,A:257-305)
Probab=68.52 E-value=8.9 Score=19.13 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=34.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC
Q ss_conf 13595799943887712321234339814540367767001152032157
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND 205 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND 205 (278)
.+.+|.+++++...+.-.+....+.+||+|.+- ++++..+++--+.|
T Consensus 81 ~~~vdGIII~g~~~~~~~i~~L~~~~iPvVlId---~~~~~~~~~~V~~D 127 (176)
T 3huu_A 81 SKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVG---KSLNYENIIHIDND 127 (176)
T ss_dssp TTCCSEEEESSCBTTCHHHHHHHHTTCCEEEES---CCCSSTTCCEEECC
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEE---ECCCCCCCCEEEEC
T ss_conf 389888998436787589999996499979995---04357887778507
No 89
>>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} (A:1-119)
Probab=67.75 E-value=9.5 Score=18.96 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=52.5
Q ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHCCCE-ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 6107881699607823579999998633983-142334587323426665556778998876301212677467887665
Q gi|254780779|r 62 TVARGGRILFVATKSQASDCVMEAAKRSAQY-CVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIER 140 (278)
Q Consensus 62 i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~-yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r 140 (278)
...++.+|+|+|........+..+....|.. ++...=. .+ .....|++..-.-+.+...
T Consensus 15 ~~~~~~kv~viGlG~sG~salA~~L~~~G~~V~~~D~~~----~~--------~~~~~L~~~gi~~~~g~~~-------- 74 (119)
T 3hn7_A 15 LYFQGXHIHILGICGTFXGSLALLARALGHTVTGSDANI----YP--------PXSTQLEQAGVTIEEGYLI-------- 74 (119)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC----CT--------THHHHHHHTTCEEEESCCG--------
T ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCC----CC--------HHHHHHHHCCCEEECCCCH--------
T ss_conf 126898899996788999999999996899499990999----95--------7899999689989848898--------
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEC-CCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 56777643443322113595799943-8877123212343398145403
Q gi|254780779|r 141 KRDKLKRALDGIRDMGGLPDLMFVVD-TNREKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 141 ~~~kl~k~lgGi~~m~~lP~~iiv~d-~~~e~~Av~EA~kl~IPvIaiv 188 (278)
.+...-.|+|++.- ...++-.+.+|+..||||++-+
T Consensus 75 ------------~~~~~~~D~vV~SPgi~~~~p~i~~a~~~gi~i~se~ 111 (119)
T 3hn7_A 75 ------------AHLQPAPDLVVVGNAXKRGXDVIEYXLDTGLRYTSGP 111 (119)
T ss_dssp ------------GGGCSCCSEEEECTTCCTTSHHHHHHHHHTCCEEEHH
T ss_pred ------------HHCCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEHH
T ss_conf ------------9959999789989954999999999998799787099
No 90
>>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} (A:1-170,A:305-355)
Probab=66.88 E-value=9.9 Score=18.84 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 3595799943887712321234339814540367
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDT 190 (278)
+-+|.|+++....+.-.+.++...|||+|.+-+.
T Consensus 125 ~~vdGIIi~~~~~~~~~i~~L~~~gIPvV~id~~ 158 (221)
T 3e3m_A 125 RRPEAMVLSYDGHTEQTIRLLQRASIPIVEIWEK 158 (221)
T ss_dssp TCCSEEEEECSCCCHHHHHHHHHCCSCEEEESSC
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCC
T ss_conf 2233222234654134667765315874032244
No 91
>>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} (A:113-245)
Probab=66.44 E-value=10 Score=18.79 Aligned_cols=109 Identities=10% Similarity=0.018 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHH---HHHHHHHHHHCCC---EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999861078816996078235---7999999863398---3142334587323426665556778998876301
Q gi|254780779|r 52 LQKALQVISDTVARGGRILFVATKSQA---SDCVMEAAKRSAQ---YCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNK 125 (278)
Q Consensus 52 L~~A~~~i~~i~~~gg~ILFVgTk~~~---~~~i~~~A~~~~~---~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~ 125 (278)
-+.|...+.+.....++|+|++..+.. ..-..-+...+.. ......+.+..-+..
T Consensus 5 g~~a~~~l~~~~~g~~~i~~i~g~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~------------------- 65 (133)
T 3brs_A 5 GIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKA------------------- 65 (133)
T ss_dssp HHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEEEECTTCHHHH-------------------
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHH-------------------
T ss_conf 8998888753134432158842553107788887649999986333342024321120899-------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCE-EEEECCCCCCCHHCCC
Q ss_conf 2126774678876655677764344332211359579994388771232123433981-4540367767001152
Q gi|254780779|r 126 ENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP-IVAVVDTNSNPDLVDY 199 (278)
Q Consensus 126 ~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IP-vIaivDTn~dp~~idy 199 (278)
.....+ +-.....|+++|+.+...-.-+++.+++.|+| -|.++-.|..|..+++
T Consensus 66 ----------~~~~~~----------~~~~~~~~~ai~~~~d~~a~gv~~al~~~g~~~di~iig~D~~~~~~~~ 120 (133)
T 3brs_A 66 ----------YDGTVE----------LLTKYPDISVMVGLNQYSATGAARAIKDMSLEAKVKLVCIDSSMEQIQY 120 (133)
T ss_dssp ----------HHHHHH----------HHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEEESCSCC---
T ss_pred ----------HHHHHH----------HHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
T ss_conf ----------999997----------6521875213421552789999999997498664034236894999999
No 92
>>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6- phosphate transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A* (A:1-206)
Probab=65.60 E-value=10 Score=18.69 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=32.9
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCCH--HCCCEEE
Q ss_conf 957999438877----1232123433981454036776700--1152032
Q gi|254780779|r 159 PDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNPD--LVDYVIP 202 (278)
Q Consensus 159 P~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp~--~idypIP 202 (278)
-|++|++....+ .-+++.|+..|+|||+|.+...+|- ..|+.|+
T Consensus 98 ~dlvI~iS~sG~t~~~i~~~~~a~~~g~~vI~IT~~~~s~l~~~ad~~l~ 147 (206)
T 2poc_A 98 DDTCVFVSQSGETADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVH 147 (206)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 64499973699967999999999866985999954777421023450003
No 93
>>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} (A:)
Probab=64.72 E-value=9.9 Score=18.83 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=24.3
Q ss_pred HHHHHHHHHHH--HHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEE
Q ss_conf 77764344332--211359579994388771232123433981454
Q gi|254780779|r 143 DKLKRALDGIR--DMGGLPDLMFVVDTNREKLAIQEARRLRIPIVA 186 (278)
Q Consensus 143 ~kl~k~lgGi~--~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIa 186 (278)
.++-..+||.- ++.+-...+++-+..... .+.|.+.|||+|.
T Consensus 27 ~~~i~~~Gg~~~~~~~~~~t~li~~~~~~~k--~~~a~~~~i~iV~ 70 (92)
T 1l7b_A 27 KALLRRLGAKVTDSVSRKTSYLVVGENPGSK--LEKARALGVPTLT 70 (92)
T ss_dssp HHHHHHTTCEEESCCSSSCCCBEECSSSSTT--HHHHHCSSSCCEE
T ss_pred HHHHHHCCCEECCCEECCCCEEEECCCCCHH--HHHHHHHCCCEEC
T ss_conf 9999986999947210662189988999809--9999993995863
No 94
>>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} (A:)
Probab=64.51 E-value=11 Score=18.56 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEE------ECCCCCCCHHCCC
Q ss_conf 26774678876655677764344332--211359579994388771232123433981454------0367767001152
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIR--DMGGLPDLMFVVDTNREKLAIQEARRLRIPIVA------VVDTNSNPDLVDY 199 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~--~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIa------ivDTn~dp~~idy 199 (278)
.+++..++. ++.++-+.+||.- ++..--+.|++-+......-+..|...|||||. ++..+.-.+.-+|
T Consensus 49 sg~~~~~~~----~l~~~i~~~Gg~v~~~~~~~tt~vi~~~~~~~~~k~~~a~~~~i~IV~~~Wl~~c~~~~~~~~~~~y 124 (132)
T 1wf6_A 49 CGFSGRKLD----KLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAHRPHVVGAKWLLECFSKGYMLSEEPY 124 (132)
T ss_dssp ESCCSHHHH----HHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHHHHHHSCCCCCEEEHHHHHHHHHHSSCCCSGGG
T ss_pred EECCHHHHH----HHHHHHHHCCCEEECCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHC
T ss_conf 738818999----9999999769489522378840798627998449999985598670799999999985986987766
Q ss_pred EEEECC
Q ss_conf 032157
Q gi|254780779|r 200 VIPGND 205 (278)
Q Consensus 200 pIP~ND 205 (278)
.++..+
T Consensus 125 ~~~~~~ 130 (132)
T 1wf6_A 125 IHSGPS 130 (132)
T ss_dssp BCCCSC
T ss_pred CCCCCC
T ss_conf 278999
No 95
>>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} (A:)
Probab=64.46 E-value=11 Score=18.55 Aligned_cols=76 Identities=4% Similarity=-0.021 Sum_probs=54.4
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 07881699607823579999998633983142334587323426665556778998876301212677467887665567
Q gi|254780779|r 64 ARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRD 143 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~ 143 (278)
....+|++|.........+.....+.|..++..+|--+...- +
T Consensus 22 ~~~~~i~iid~~~~~~~~i~~~l~~~g~~~~i~~~~~~~~~~--------------~----------------------- 64 (218)
T 2vpi_A 22 SMEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAI--------------K----------------------- 64 (218)
T ss_dssp -CTTCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHH--------------H-----------------------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHH--------------H-----------------------
T ss_conf 488989999898459899999977459569998899999999--------------8-----------------------
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEC------CCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 77643443322113595799943------8877123212343398145403
Q gi|254780779|r 144 KLKRALDGIRDMGGLPDLMFVVD------TNREKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 144 kl~k~lgGi~~m~~lP~~iiv~d------~~~e~~Av~EA~kl~IPvIaiv 188 (278)
...+|.+++.. ...+...++++...++|++|||
T Consensus 65 ------------~~~~dGiii~Gg~~~~~d~~~~~~i~~~~~~~~PiLGIC 103 (218)
T 2vpi_A 65 ------------EQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGIC 103 (218)
T ss_dssp ------------HHTCSEEEEEC---------CCCCCGGGGTSSCCEEEET
T ss_pred ------------HCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCCEEEEH
T ss_conf ------------519988999589988543446431266662597378751
No 96
>>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:1-104,A:238-283)
Probab=63.55 E-value=10 Score=18.70 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=29.6
Q ss_pred CCCCCEEEEECC--CCCCHHHHHHHHCCCEEEEECCCCCCCHHC
Q ss_conf 135957999438--877123212343398145403677670011
Q gi|254780779|r 156 GGLPDLMFVVDT--NREKLAIQEARRLRIPIVAVVDTNSNPDLV 197 (278)
Q Consensus 156 ~~lP~~iiv~d~--~~e~~Av~EA~kl~IPvIaivDTn~dp~~i 197 (278)
.+.+|.+++..+ ......+.-+...|||+|.+-+.-.++...
T Consensus 55 ~~~vdgIIi~~~~~~~~~~~~~~l~~~gIPvV~id~~~~~~~~~ 98 (150)
T 2ioy_A 55 QQKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRSANGGDVV 98 (150)
T ss_dssp HTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSSSCCS
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 62323344566322222100002331575289981577888867
No 97
>>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} (A:1-106,A:243-276)
Probab=63.27 E-value=12 Score=18.41 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=30.4
Q ss_pred CCEEEEE--CCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC
Q ss_conf 9579994--3887712321234339814540367767001152032157
Q gi|254780779|r 159 PDLMFVV--DTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND 205 (278)
Q Consensus 159 P~~iiv~--d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND 205 (278)
-|++++. +.....-+++++...|||+|.+ |+.-+....++.|-.|.
T Consensus 60 ~dgIIl~~~~~~~~~~~l~~l~~~gIPvV~i-d~~i~~~~~~~~V~~D~ 107 (140)
T 3ksm_A 60 PDALILAPNSAEDLTPSVAQYRARNIPVLVV-DSDLAGDAHQGLVATDP 107 (140)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCSSSCSSEEEECCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEC-CCCCCCCCCCEEEEECH
T ss_conf 9899993798577799999999779949973-66446787640898449
No 98
>>3g68_A Putative phosphosugar isomerase; YP_001089791.1, SIS domain, double-SIS domain protein, structural genomics; HET: MSE CIT; 1.80A {Clostridium difficile 630} (A:1-188)
Probab=63.00 E-value=12 Score=18.38 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=34.0
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCCH--HCCCE--EEECC
Q ss_conf 957999438877----1232123433981454036776700--11520--32157
Q gi|254780779|r 159 PDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNPD--LVDYV--IPGND 205 (278)
Q Consensus 159 P~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp~--~idyp--IP~ND 205 (278)
-|++|++....+ --+++.|+..|+|+|+|.|...+|= ..|+. +|..+
T Consensus 83 ~d~vI~iS~sG~t~e~~~~~~~ak~~g~~vi~iT~~~~s~l~~~ad~~l~~~~~~ 137 (188)
T 3g68_A 83 NTLVVGVSQGGSSYSTYNAXKLAEDKGCKIASXAGCKNALIDEISDYILTVNCGE 137 (188)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCSEECCCCCCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
T ss_conf 8638876078685899999987765386422355666662010036531103566
No 99
>>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes str} (A:27-183)
Probab=62.88 E-value=12 Score=18.36 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=32.8
Q ss_pred CCEEEEECCCCCCH----HHHHHHHCC-CEEEEECCCCCCC--HHCCCEEEEC
Q ss_conf 95799943887712----321234339-8145403677670--0115203215
Q gi|254780779|r 159 PDLMFVVDTNREKL----AIQEARRLR-IPIVAVVDTNSNP--DLVDYVIPGN 204 (278)
Q Consensus 159 P~~iiv~d~~~e~~----Av~EA~kl~-IPvIaivDTn~dp--~~idypIP~N 204 (278)
-|++|++....+.. +++.+++.| +|+|++.|...+| ...|+.++.-
T Consensus 72 ~dl~I~iS~sG~~~~~~~~~~~~~~~g~~~vi~iT~~~~s~l~~~ad~~l~~~ 124 (157)
T 2aml_A 72 LDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIG 124 (157)
T ss_dssp CCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEECS
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCCC
T ss_conf 72699985689965789999975304523698744872134354246442246
No 100
>>2etv_A Iron(III) ABC transporter, periplasmic iron- binding protein, putative; TM0189, structural genomics; HET: MLY; 1.70A {Thermotoga maritima MSB8} (A:1-175)
Probab=62.71 E-value=6.4 Score=20.04 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 95799943887712321234339814540367767
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSN 193 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~d 193 (278)
||+||+.+-.. ...+.+....|||++.+--.+.+
T Consensus 97 PDlvi~~~~~~-~~~~~~l~~~gip~v~~~~~~~~ 130 (175)
T 2etv_A 97 PDVVFITYVDR-XTAXDIQEXTGIPVVVLSYGNLG 130 (175)
T ss_dssp CSEEEEESCCH-HHHHHHHHHHTSCEEEECCCCTT
T ss_pred CCEEEECCCCC-CHHHHHHHHCCCCEEEECCCCCC
T ss_conf 97998578874-02566654138877984145567
No 101
>>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} (A:1-145)
Probab=62.70 E-value=3.6 Score=21.69 Aligned_cols=105 Identities=10% Similarity=-0.020 Sum_probs=62.5
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 07881699607823579999998633983142334587323426665556778998876301212677467887665567
Q gi|254780779|r 64 ARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRD 143 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~ 143 (278)
-.|++||+||..+.+..-+..+.+.-.-..|-.+ .++ ..+ ..+.. .+... +- .|..
T Consensus 11 l~~k~VLViGgG~vA~rk~~~ll~~ga~v~vva~----~~~------~el---~~l~~--~~~i~-~~-------~~~~- 66 (145)
T 1kyq_A 11 LKDKRILLIGGGEVGLTRLYKLXPTGCKLTLVSP----DLH------KSI---IPKFG--KFIQN-KD-------QPDY- 66 (145)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE----EEC------TTH---HHHHC--GGGC----------------
T ss_pred ECCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC----CCC------HHH---HHHHH--HHCCC-CC-------CHHH-
T ss_conf 1898699989989999999999978996999908----988------789---98875--31011-11-------0110-
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCC
Q ss_conf 776434433221135957999438877123212343398145403677670011520321577
Q gi|254780779|r 144 KLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDD 206 (278)
Q Consensus 144 kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDd 206 (278)
.-..+.++-+|+....+...-++|+.++|++- .-++|..-||.+|+-=+
T Consensus 67 ----------~~~dl~~~~lvi~at~d~~ln~~~~~~~~lvn----~~d~~~~~~f~~pa~~~ 115 (145)
T 1kyq_A 67 ----------REDAKRFINPNWDPTKNEIYEYIRSDFKDEYL----DLENENDAWYIIXTCIP 115 (145)
T ss_dssp --------------CEEECTTCCTTSCCCSEEECSSCCGGGG----CCSSTTCCEEEEEECCS
T ss_pred ----------HCCHHHHCCHHHHHCCCCCEEEEECCCCHHHH----HHHCCCCCEEEEEECCC
T ss_conf ----------00000001101201025644898546786665----33122356069997489
No 102
>>1cdz_A Protein (DNA-repair protein XRCC1); BRCT, BRCA1, protein-protein interaction; 3.20A {Homo sapiens} (A:)
Probab=62.53 E-value=12 Score=18.32 Aligned_cols=48 Identities=6% Similarity=-0.033 Sum_probs=32.3
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEE------CCCCCCCHHCCCEEE
Q ss_conf 113595799943887712321234339814540------367767001152032
Q gi|254780779|r 155 MGGLPDLMFVVDTNREKLAIQEARRLRIPIVAV------VDTNSNPDLVDYVIP 202 (278)
Q Consensus 155 m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai------vDTn~dp~~idypIP 202 (278)
+..-.+.+++-++.....-...|..+|||+|.. +..+.-.+.-+|.||
T Consensus 40 ~~~~~t~iv~~~~~~~k~~~~~~~~~~i~iV~~~Wi~~c~~~~~~l~~~~y~l~ 93 (96)
T 1cdz_A 40 MSDRVQFVITAQEWDPSFEEALMDNPSLAFVRPRWIYSCNEKQKLLPHQLYGVV 93 (96)
T ss_dssp CSTTCSEEECSSCCCHHHHHHHTTCTTCEEECTHHHHHHHTTTSCCCGGGGBCC
T ss_pred CCCCCEEEEECCCCCCEEEEHHHHCCCCEEEEEHHHHHHHHCCCCCCCHHCEEC
T ss_conf 788854999606898607752664799879987099999874875891323737
No 103
>>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} (A:123-255,A:318-375)
Probab=62.45 E-value=12 Score=18.32 Aligned_cols=92 Identities=9% Similarity=0.109 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHH----HHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999986107881699607823----5799999986339831423345873234266655567789988763012
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATKSQ----ASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKE 126 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk~~----~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~ 126 (278)
.-+....++.+ ..+++|-||...-. ..+.+++..++.|.--+...|.+=.-|+|..+-..++.
T Consensus 5 qa~~~a~~l~~--~g~k~Vaii~~D~ayG~~~~~~~~~~l~~~G~~Vv~~~~~~~~~tDfss~l~~i~~----------- 71 (191)
T 3i09_A 5 LAKGTGSAVVK--QGGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQS----------- 71 (191)
T ss_dssp HHHHHHHHHHH--TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH-----------
T ss_pred HHHHHHHHHHH--HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHH-----------
T ss_conf 99999999875--13778999516871878999999998874496488889606756541379988762-----------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHCCCEEE
Q ss_conf 12677467887665567776434433221135957999438877-123212343398145
Q gi|254780779|r 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE-KLAIQEARRLRIPIV 185 (278)
Q Consensus 127 ~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e-~~Av~EA~kl~IPvI 185 (278)
.-||+|++.....+ ..++++++..|+...
T Consensus 72 ------------------------------s~advVil~~~g~d~~~~ikqa~e~Gl~~~ 101 (191)
T 3i09_A 72 ------------------------------SKAQILGLANAGGDTVNAIKAAKEFGITKT 101 (191)
T ss_dssp ------------------------------TCCSEEEEECCHHHHHHHHHHHHHTTGGGT
T ss_pred ------------------------------CCCCEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf ------------------------------599889990577068999999998098876
No 104
>>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* (A:110-246)
Probab=61.43 E-value=12 Score=18.20 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCC-----CEEEEECCCCC----CCHHCCCEEE
Q ss_conf 3595799943887712321234339-----81454036776----7001152032
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLR-----IPIVAVVDTNS----NPDLVDYVIP 202 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~-----IPvIaivDTn~----dp~~idypIP 202 (278)
..|++||+.+-..-.-+++.|+++| |.|||+=|+.. .|..-+..|+
T Consensus 78 ~~~~ai~~~~D~~A~g~~~al~~~g~~P~di~iig~d~~~~~~~~~p~ltti~i~ 132 (137)
T 2fqx_A 78 SGVNVIFQVAGGTGNGVIKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLT 132 (137)
T ss_dssp TTCCEEEEECGGGHHHHHHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEE
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 6997999747886616999999875146985899984430024566678875998
No 105
>>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} (A:187-366)
Probab=60.99 E-value=13 Score=18.15 Aligned_cols=118 Identities=9% Similarity=0.058 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999861078816996078---2357999999863398314233458732342666555677899887630121
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
.+.+++..|. .-..-++|+|-. ..+.+.+.++|+++|.|+++.---.|.+-.-.- ..-+++
T Consensus 10 ~i~~~~~~L~---~A~rPvii~G~~~~~~~a~~~l~~lae~~g~Pv~~t~~~kg~~~~~hp-------------~~~~g~ 73 (180)
T 1ozh_A 10 AIDQVAKLIA---QAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNF-------------SRFAGR 73 (180)
T ss_dssp HHHHHHHHHH---HCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTC-------------TTEEEE
T ss_pred HHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCC-------------CCCCCC
T ss_conf 9999999997---543986457876545166899999998608971102323676433455-------------434445
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEEC
Q ss_conf 267-74678876655677764344332211359579994388771232123433981454036776700115203215
Q gi|254780779|r 128 QGF-TKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGN 204 (278)
Q Consensus 128 ~~~-tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~N 204 (278)
.++ .......+ -.-+|+|++++..-......--..-+-++|-+- .||..+....+..
T Consensus 74 ~g~~~~~~~~~~-----------------i~~aD~il~iG~~~~~~~~~~~~~~~~~~i~i~---~d~~~~~~~~~~~ 131 (180)
T 1ozh_A 74 VGLFNNQAGDRL-----------------LQLADLVICIGYSPVEYEPAMWNSGNATLVHID---VLPAYEERNYTPD 131 (180)
T ss_dssp CSSBTTCHHHHH-----------------HHHCSEEEEESCCGGGSCGGGTCCSCSEEEEEE---SSCCCCBTTBCCS
T ss_pred CCCCCCHHHHCC-----------------CCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEE---CCHHHHCCCCCCC
T ss_conf 676564233124-----------------650204666376556667654678876179984---3355423577764
No 106
>>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} (A:)
Probab=60.54 E-value=13 Score=18.10 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=37.5
Q ss_pred HHHHHHHHH--HHHCCCCCEEEEECCC-CCCHHHHHHHHCCCEEEEE------CCCCCCCHHCCCEEEEC
Q ss_conf 776434433--2211359579994388-7712321234339814540------36776700115203215
Q gi|254780779|r 144 KLKRALDGI--RDMGGLPDLMFVVDTN-REKLAIQEARRLRIPIVAV------VDTNSNPDLVDYVIPGN 204 (278)
Q Consensus 144 kl~k~lgGi--~~m~~lP~~iiv~d~~-~e~~Av~EA~kl~IPvIai------vDTn~dp~~idypIP~N 204 (278)
++-+.+||- .++..-...+++.+.. ....-.+.|.++|||||.. ++.+.-.+.-+|.++.+
T Consensus 36 ~~i~~~Gg~~~~~~~~~~~~~i~~~~~~~~~~k~~~a~~~~~~iV~~~Wi~~c~~~~~~~~~~~y~i~~~ 105 (107)
T 3l3e_A 36 GIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQECKHLPESLYPHTYN 105 (107)
T ss_dssp HHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHHHHTSCCCGGGCCTTCC
T ss_pred HHHHHCCCEEECCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCHHHCCCCCC
T ss_conf 9999909998251338852899626888745999997749968841999999999398698443889889
No 107
>>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} (A:199-372)
Probab=59.70 E-value=13 Score=18.01 Aligned_cols=138 Identities=10% Similarity=-0.008 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999861078816996078-235799999986339831423345873234266655567789988763012126
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATK-SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQG 129 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk-~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~ 129 (278)
.+.+|+..|.. ...=++++|.. ..+...+.++|+++|.|+++.-.-.|.+-.-. ...-|.+..
T Consensus 5 ~i~~a~~~L~~---AkrPvii~G~g~~~a~~~l~~lae~~~~pv~~t~~~kg~~~~~h-------------p~~~G~~g~ 68 (174)
T 1ybh_A 5 HLEQIVRLISE---SKKPVLYVGGGCLNSSDELGRFVELTGIPVASTLMGLGSYPXDD-------------ELSLHMLGM 68 (174)
T ss_dssp HHHHHHHHHHH---CSSEEEEECGGGTTCHHHHHHHHHHHCCCEEECTTTTTSSCTTS-------------TTEEEECST
T ss_pred HHHHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCC-------------CCCCCCCCC
T ss_conf 99999999970---79919998986245199999999986989998742476668400-------------132002577
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHH
Q ss_conf 77467887665567776434433221135957999438877123212343398145403677670011520321577268
Q gi|254780779|r 130 FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSR 209 (278)
Q Consensus 130 ~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~ 209 (278)
........+.. -.|+|++++..-..... .......+---++.-|.||..+..-.|..--=..
T Consensus 69 ~~~~~~~~~l~-----------------~aDlil~iG~~~~~~~~-~~~~~~~~~~~~I~i~~d~~~~~~~~~~~~~i~~ 130 (174)
T 1ybh_A 69 HGTVYANYAVE-----------------HSDLLLAFGVRFDDRVT-GKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCG 130 (174)
T ss_dssp TSCHHHHHHHH-----------------HCSEEEEESCCCCHHHH-SSGGGTTTTSEEEEEESCTTTTTSSSCCSEEEES
T ss_pred CCCHHHHHHHH-----------------CCCEEEEECCCCCCCCC-CCCCCCCCCCEEEEEECCHHHHCCCCCCCEEEEC
T ss_conf 68799986521-----------------28999996986520134-5322346787189995488994655476267713
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780779|r 210 SIALFCDLVASAA 222 (278)
Q Consensus 210 si~l~~~~i~~ai 222 (278)
-+..++..|.+.+
T Consensus 131 d~~~~l~~L~~~l 143 (174)
T 1ybh_A 131 DVKLALQGMNKVL 143 (174)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 0588898888886
No 108
>>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:1-106,A:248-291)
Probab=58.71 E-value=7.1 Score=19.75 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=26.7
Q ss_pred CCCCEEEEECCCCCCH--HHHHHHHCCCEEEEECCC
Q ss_conf 3595799943887712--321234339814540367
Q gi|254780779|r 157 GLPDLMFVVDTNREKL--AIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~--Av~EA~kl~IPvIaivDT 190 (278)
+-+|+|++..+..+.. .++++...|||+|.+-..
T Consensus 60 ~~vdgIIi~~~~~~~~~~~i~~l~~~gIPvV~i~~~ 95 (150)
T 3l49_A 60 QKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTA 95 (150)
T ss_dssp HCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 599999992784030589999999869919966776
No 109
>>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} PDB: 3hbj_A* (A:1-253,A:438-454)
Probab=58.62 E-value=14 Score=17.89 Aligned_cols=128 Identities=8% Similarity=0.055 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCC-CCCCCCC---CCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999861078816996078235799999986339831423-3458732---342666555677899887630121
Q gi|254780779|r 52 LQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNS-KWLGGMM---TNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 52 L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~-RWlGG~L---TN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
+.-.+.+.+.++..|-+|-|+.|....+.+-...+.......+.. -+..|.. .+-......+ ..+..
T Consensus 27 i~P~l~Lak~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~------ 97 (270)
T 3hbf_A 27 AAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVHDGLPKGYVSSGNPREPI---FLFIK------ 97 (270)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEECCCCCCTTCCCCSCTTHHH---HHHHH------
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHH---HHHHH------
T ss_conf 999999999999789947999804752045565315567898727668899986443435667899---99999------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEE
Q ss_conf 267746788766556777643443-322113595799943887712321234339814540367767001152032
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDG-IRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIP 202 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgG-i~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP 202 (278)
.-...++..+.. .......|++|++-.... .+..=|.++|||.+.++-+.+.-....+.+|
T Consensus 98 ------------~~~~~~~~~~~~~~~~~~~~~~~vV~D~~~~--wa~~vA~~lgIP~~~f~~~~a~~~~~~~~~~ 159 (270)
T 3hbf_A 98 ------------AMQENFKHVIDEAVAETGKNITCLVTDAFFW--FGADLAEEMHAKWVPLWTAGPHSLLTHVYTD 159 (270)
T ss_dssp ------------HHHHHHHHHHHHHHHHHCCCCCEEEEETTCT--THHHHHHHTTCEEEEEECSCHHHHHHHHTHH
T ss_pred ------------HHHHHHHHHHHHHHHHCCCCCEEEEECCCCH--HHHHHHHHCCCCEEEEECCCHHHHHHHHCCC
T ss_conf ------------9887579999999972389953999514342--8999999736881886246257777763120
No 110
>>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} (A:1-176,A:349-376)
Probab=58.40 E-value=14 Score=17.87 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH-HHHHHHHCCCEEEEEC
Q ss_conf 6556777643443322113595799943887712-3212343398145403
Q gi|254780779|r 139 ERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKL-AIQEARRLRIPIVAVV 188 (278)
Q Consensus 139 ~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~-Av~EA~kl~IPvIaiv 188 (278)
.+-+.++.+.|.-. .||+|+|.+=..+.. +.-=|.+++||++-+-
T Consensus 77 ~~~i~~~~~~l~~~-----~PD~VlV~GDt~~~lA~AlaA~~~~IPvaHie 122 (204)
T 1v4v_A 77 ARILPQAARALKEX-----GADYVLVHGDTLTTFAVAWAAFLEGIPVGHVE 122 (204)
T ss_dssp HHHHHHHHHHHHHT-----TCSEEEEESSCHHHHHHHHHHHHTTCCEEEET
T ss_pred HHHHHHHHHHHHCC-----CCCEEEECCCCCCCHHHHHHHHHHHHHHHEEC
T ss_conf 99999877665404-----76523101366431136788987634451110
No 111
>>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} (A:123-258,A:339-364)
Probab=58.21 E-value=14 Score=17.85 Aligned_cols=99 Identities=11% Similarity=-0.031 Sum_probs=66.3
Q ss_pred HHHHHHHHHHCCCCEEEEEECCH----HHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999998610788169960782----35799999986339831423345873234266655567789988763012126
Q gi|254780779|r 54 KALQVISDTVARGGRILFVATKS----QASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQG 129 (278)
Q Consensus 54 ~A~~~i~~i~~~gg~ILFVgTk~----~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~ 129 (278)
....++.+ ....+|.+|...- ...+.+++.+++.|.-.+..-+.+-.-|+|..+-..++.
T Consensus 9 ala~~l~~--~g~~~Vaii~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~-------------- 72 (162)
T 3lop_A 9 KXITALVT--IGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAXASYPRNTANVGPAVDKLLA-------------- 72 (162)
T ss_dssp HHHHHHHH--TTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHH--------------
T ss_pred HHHHHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHH--------------
T ss_conf 99999998--19988999983683269999999999997698899999837988536899999985--------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHCCCEEE-EECCCCCCCH
Q ss_conf 7746788766556777643443322113595799943887-7123212343398145-4036776700
Q gi|254780779|r 130 FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNR-EKLAIQEARRLRIPIV-AVVDTNSNPD 195 (278)
Q Consensus 130 ~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~-e~~Av~EA~kl~IPvI-aivDTn~dp~ 195 (278)
.-||+||+..... -...+++++++|.... -..|...+++
T Consensus 73 ---------------------------~~pdvIv~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~ 113 (162)
T 3lop_A 73 ---------------------------ADVQAIFLGATAEPAAQFVRQYRARGGEAQLLGLSSIDPGI 113 (162)
T ss_dssp ---------------------------SCCSEEEEESCHHHHHHHHHHHHHTTCCCEEEECTTSCHHH
T ss_pred ---------------------------CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
T ss_conf ---------------------------79899999687899999999999838997699975788699
No 112
>>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} (A:1-113,A:249-288)
Probab=58.16 E-value=7.5 Score=19.61 Aligned_cols=49 Identities=8% Similarity=-0.052 Sum_probs=32.4
Q ss_pred CCCCCEEEEECCCC--CCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC
Q ss_conf 13595799943887--712321234339814540367767001152032157
Q gi|254780779|r 156 GGLPDLMFVVDTNR--EKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND 205 (278)
Q Consensus 156 ~~lP~~iiv~d~~~--e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND 205 (278)
.+-+|++++..... ..-.+.++...|||+|.+- +..+....++..+-|-
T Consensus 57 ~~~vDGIIi~~~~~~~~~~~i~~l~~~gIPvV~id-~~~~~~~~~~V~~Dn~ 107 (153)
T 1gud_A 57 NKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLD-EKIDMDNLKKAGGNVE 107 (153)
T ss_dssp TSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEES-SCCCHHHHHHTTCCCS
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECC-CCCCCCCCCCCCCCCC
T ss_conf 75998576425433211489999997199176237-7765444334567756
No 113
>>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} (A:106-241)
Probab=57.60 E-value=14 Score=17.78 Aligned_cols=103 Identities=8% Similarity=-0.138 Sum_probs=61.4
Q ss_pred HHHHHHHHHCCC-CEEEEEECCHHH------HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999861078-816996078235------7999999863398314233458732342666555677899887630121
Q gi|254780779|r 55 ALQVISDTVARG-GRILFVATKSQA------SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 55 A~~~i~~i~~~g-g~ILFVgTk~~~------~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
+...+..+..+| .+|.||+..... ..-........|.++....+.-+..+....-......+...
T Consensus 5 ~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 76 (136)
T 2qu7_A 5 AYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATK-------- 76 (136)
T ss_dssp HHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHH--------
T ss_conf 777777776522561258940531036677678888789983998674341024433213677889999999--------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 26774678876655677764344332211359579994388771232123433981------4540367
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
..-...|+++|+.+-.--.-+++.+..+||- |+|+-|+
T Consensus 77 -------------------------~~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~iP~di~ii~fd~~ 120 (136)
T 2qu7_A 77 -------------------------TLLSKGIKGIVATNHLLLLGALQAIKESEKEIKKDVIIVGFDDS 120 (136)
T ss_dssp -------------------------HHHHTTCCEEEECSHHHHHHHHHHHHHSSCCBTTTBEEEEESCC
T ss_pred -------------------------HHHCCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCH
T ss_conf -------------------------85002564267751222445311111003332233213466876
No 114
>>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} (A:183-361,A:548-590)
Probab=57.52 E-value=14 Score=17.77 Aligned_cols=133 Identities=12% Similarity=0.058 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999861078816996078-235799999986339831423345873234266655567789988763012126
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATK-SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQG 129 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk-~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~ 129 (278)
.|..|+..|. ....-+++||-. ..+...+.++|+++|.|+++.-.-.|++-+-. ...-|....
T Consensus 12 ~i~~a~~~L~---~AkrPvIivG~g~~~a~~~l~~la~~~g~PV~~t~~~kg~~~e~h-------------p~~~G~~G~ 75 (222)
T 1v5e_A 12 DIDAAVELLN---NSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETFEWDF-------------EALTGSTYR 75 (222)
T ss_dssp HHHHHHHHHH---HCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECTTCGGGSCTTC-------------TTEEEESSS
T ss_pred HHHHHHHHHH---HCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-------------CCHHCCCCC
T ss_conf 9999999997---578988998400100379999876530232222222334332332-------------100002234
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCC----HHCCCEEEECC
Q ss_conf 77467887665567776434433221135957999438877123212343398145403677670----01152032157
Q gi|254780779|r 130 FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNP----DLVDYVIPGND 205 (278)
Q Consensus 130 ~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp----~~idypIP~ND 205 (278)
+..+......+ -.|+|++++..-............-++|-| |.|..- ...+..|.|+
T Consensus 76 ~~~~~~~~~l~-----------------~aDlVL~vG~~l~~~~~~~~~~~~~~~i~I-d~dp~~i~~~~~~~~~i~aD- 136 (222)
T 1v5e_A 76 VGWKPANETIL-----------------EADTVLFAGSNFPFSEVEGTFRNVDNFIQI-DIDPAMLGKRHHADVAILGD- 136 (222)
T ss_dssp SSCHHHHHHHH-----------------HCSEEEEESCCCTTTTTTTTTTTCSEEEEE-ESCGGGTTSSSCCSEEEESC-
T ss_pred CCCCHHHHHHH-----------------HCCCHHCCCCCCCCCCCCCCCCCCCCEEEE-EECCCEEEEEECCEEEEECC-
T ss_conf 67611233432-----------------201000023456665544532478868999-70312010000321566053-
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 72689999999999
Q gi|254780779|r 206 DSSRSIALFCDLVA 219 (278)
Q Consensus 206 ds~~si~l~~~~i~ 219 (278)
...++.-++..+.
T Consensus 137 -~~~~L~~L~~~l~ 149 (222)
T 1v5e_A 137 -AALAIDEILNKVD 149 (222)
T ss_dssp -HHHHHHHHHHHSC
T ss_pred -HHHHHHHHHHHHH
T ss_conf -7889999998654
No 115
>>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} (A:1-71,A:178-250)
Probab=57.42 E-value=15 Score=17.76 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=65.8
Q ss_pred EEEECHHHHH----HHHHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHHHHHHHCCCE-ECCCCCCCCCCCCHHHHHHHH
Q ss_conf 1675389999----999999999998610788169960782-3579999998633983-142334587323426665556
Q gi|254780779|r 40 THIIDLSQTV----PMLQKALQVISDTVARGGRILFVATKS-QASDCVMEAAKRSAQY-CVNSKWLGGMMTNWKTVSQSI 113 (278)
Q Consensus 40 ihIIdL~kT~----~~L~~A~~~i~~i~~~gg~ILFVgTk~-~~~~~i~~~A~~~~~~-yV~~RWlGG~LTN~~ti~~si 113 (278)
.-++|++-|+ ..+..+..+|+.+...|..+.||..++ ...+.+.+.+...|.. +..+-| |+-..+
T Consensus 5 ~~~~D~DGtL~~~~~~~~~~~e~i~~l~~~G~~~~i~Tn~s~~~~~~~~~~l~~~gi~~~~~~~~-----~~~p~~---- 75 (144)
T 2c4n_A 5 NVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFY-----TSSPWI---- 75 (144)
T ss_dssp EEEEECBTTTEETTEECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHHHHTTCCCCGGGEE-----EHSTHH----
T ss_pred EEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEC-----CHHHHH----
T ss_conf 99997888008799868219999999997799589992899899899975543124677521022-----152577----
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 77899887630121267746788766556777643443322113595799943887712321234339814540367767
Q gi|254780779|r 114 QKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSN 193 (278)
Q Consensus 114 ~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~d 193 (278)
+.. +-+.+ |+ ....+++|.|-... -|.-|+..|++++.+..-...
T Consensus 76 --~~~--------------------------~~~~~-~v----~~~~~~~VgDd~~~--Di~~a~~~G~~~i~v~~g~~~ 120 (144)
T 2c4n_A 76 --IRA--------------------------ALNKM-QA----HSEETVIVGDNLRT--DILAGFQAGLETILVLSGVSS 120 (144)
T ss_dssp --HHH--------------------------HHHHH-TC----CGGGEEEEESCTTT--HHHHHHHTTCEEEEESSSSCC
T ss_pred --HHH--------------------------HHHHH-HC----CCCCCCCCCCCHHH--HHHHHHHCCCCEEEECCCCCC
T ss_conf --776--------------------------66664-04----75335122787277--999999879989998999999
Q ss_pred CHH
Q ss_conf 001
Q gi|254780779|r 194 PDL 196 (278)
Q Consensus 194 p~~ 196 (278)
+..
T Consensus 121 ~~~ 123 (144)
T 2c4n_A 121 LDD 123 (144)
T ss_dssp GGG
T ss_pred HHH
T ss_conf 899
No 116
>>3i0z_A Putative tagatose-6-phosphate ketose/aldose isomerase; NP_344614.1, structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4} (A:55-173)
Probab=57.37 E-value=10 Score=18.78 Aligned_cols=43 Identities=5% Similarity=-0.062 Sum_probs=27.7
Q ss_pred CEEEEECCCCCC----HHHHHHHH--CCCEEEEECCCCCCC--HHCCCEEE
Q ss_conf 579994388771----23212343--398145403677670--01152032
Q gi|254780779|r 160 DLMFVVDTNREK----LAIQEARR--LRIPIVAVVDTNSNP--DLVDYVIP 202 (278)
Q Consensus 160 ~~iiv~d~~~e~----~Av~EA~k--l~IPvIaivDTn~dp--~~idypIP 202 (278)
|++|++....+. .+++.|++ -|+|+|+|.+...+| ...|+.|+
T Consensus 57 dl~I~iS~sG~t~~~~~~~~~ak~~~~g~~vIaiT~~~~s~l~~~ad~~l~ 107 (119)
T 3i0z_A 57 TVLVSFARSGNSPESLATVDLAKSLVDELYQVTITCAADGKLALQAHGDDR 107 (119)
T ss_dssp EEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSHHHHTSSSCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHCCCCC
T ss_conf 599998478587899999999998577876403305889768776336765
No 117
>>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} (A:1-100,A:232-251)
Probab=56.80 E-value=6 Score=20.21 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=26.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 13595799943887712321234339814540367
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDT 190 (278)
.+.||.||+..+..+.. +.++...+||+|.+-.-
T Consensus 62 ~~~vDGIIi~~~~~~~~-~~~~~~~~iPvV~id~~ 95 (120)
T 3e61_A 62 SHNCTGMISTAFNENII-ENTLTDHHIPFVFIDRI 95 (120)
T ss_dssp HTTCSEEEECGGGHHHH-HHHHHHC-CCEEEGGGC
T ss_pred HCCCCCEEECCCCHHHH-HHHHHHCCCCEEEEEEC
T ss_conf 44664225314311557-87764037530355305
No 118
>>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} (A:)
Probab=56.37 E-value=15 Score=17.65 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=57.8
Q ss_pred HHCCCCEEEEEECC----HHHHHHHHHHHHHCC--CEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 61078816996078----235799999986339--831423345873234266655567789988763012126774678
Q gi|254780779|r 62 TVARGGRILFVATK----SQASDCVMEAAKRSA--QYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKER 135 (278)
Q Consensus 62 i~~~gg~ILFVgTk----~~~~~~i~~~A~~~~--~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~ 135 (278)
...+.++|.+||-. ++...+.+ ...+.| .+.||-+|-+..+-+..
T Consensus 9 ~l~~pk~iAViG~S~~~~~~g~~v~~-~l~~~g~~v~~v~p~~~~~ei~G~~---------------------------- 59 (145)
T 2duw_A 9 ILTSTRTIALVGASDKPDRPSYRVMK-YLLDQGYHVIPVSPKVAGKTLLGQQ---------------------------- 59 (145)
T ss_dssp HHHHCCCEEEESCCSCTTSHHHHHHH-HHHHHTCCEEEECSSSTTSEETTEE----------------------------
T ss_pred HHHCCCEEEEEEECCCCCCCHHHHHH-HHHHCCCEEEEECCCCCEEEEEEEE----------------------------
T ss_conf 98668939999207999983899999-9986898689852454412562062----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHCCCEEEEECCCCCCCHHC
Q ss_conf 8766556777643443322113595799943887-7123212343398145403677670011
Q gi|254780779|r 136 LNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNR-EKLAIQEARRLRIPIVAVVDTNSNPDLV 197 (278)
Q Consensus 136 ~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~-e~~Av~EA~kl~IPvIaivDTn~dp~~i 197 (278)
.+..+.++..-+|+++++-+.. -.-+++||..+|++.+-+.-..-++..+
T Consensus 60 ------------~~~sl~eip~~iD~v~i~~p~~~~~~~i~e~~~~g~k~~~~~~~~~~e~~~ 110 (145)
T 2duw_A 60 ------------GYATLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQLGVINEQAA 110 (145)
T ss_dssp ------------CCSSTTTCSSCCSEEECCSCSTHHHHHHHHHHHHTCCEEECCTTCCCHHHH
T ss_pred ------------CCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH
T ss_conf ------------257544467621168995149999999999997299759952454419999
No 119
>>2r79_A Periplasmic binding protein; heme transport, transport protein; HET: HEM; 2.40A {Pseudomonas aeruginosa} (A:1-91)
Probab=55.85 E-value=13 Score=18.15 Aligned_cols=35 Identities=9% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 3322113595799943887712321234339814540
Q gi|254780779|r 151 GIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 151 Gi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
.|..+. ||+||........-+...-+++|||++-+
T Consensus 54 ~i~~l~--PDlvi~~~~~~~~~~~~~l~~~gi~v~v~ 88 (91)
T 2r79_A 54 GVLALR--PDILIGTEEMGPPPVLKQLEGAGVRVETL 88 (91)
T ss_dssp HHHTTC--CSEEEECTTCCCHHHHHHHHHTTCCEEEC
T ss_pred HHHHCC--CCEEEEECCCCHHHHHHHHHHCCCCCCCC
T ss_conf 998459--98699735642055777765316732135
No 120
>>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:102-230)
Probab=55.33 E-value=16 Score=17.54 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHH----HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999861078816996078235----7999999863398314233458732342666555677899887630121
Q gi|254780779|r 52 LQKALQVISDTVARGGRILFVATKSQA----SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 52 L~~A~~~i~~i~~~gg~ILFVgTk~~~----~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
.+.|...+.+ ....+|.|||..... ..-+.+.....|.++....+.++....- ....+ ..
T Consensus 5 ~~~a~~~L~~--~G~~~i~~i~~~~~~~~~R~~g~~~a~~~~g~~~~~~~~~~~~~~~~--~~~~~---~~--------- 68 (129)
T 3gyb_A 5 AEIATKHLID--LGHTHIAHLRVGSGAGLRRFESFEATXRAHGLEPLSNDYLGPAVEHA--GYTET---LA--------- 68 (129)
T ss_dssp HHHHHHHHHH--TTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCSCCCHHH--HHHHH---HH---------
T ss_pred HHHHCCHHHH--CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH--HHHHH---HH---------
T ss_conf 3310000011--02232200012320235667777789999743012112333343777--65566---77---------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCC------EEEEECCC
Q ss_conf 2677467887665567776434433221135957999438877123212343398------14540367
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRI------PIVAVVDT 190 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~I------PvIaivDT 190 (278)
.......|+++|+.+-..-.-+++.+++.|+ .+||+-|+
T Consensus 69 ------------------------~~~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~ip~di~ivgfd~~ 113 (129)
T 3gyb_A 69 ------------------------LLKEHPEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYDNT 113 (129)
T ss_dssp ------------------------HHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCC
T ss_pred ------------------------HHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf ------------------------765136863553125331135789988763300011024542582
No 121
>>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:109-240)
Probab=55.03 E-value=16 Score=17.51 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=56.6
Q ss_pred HHHHHHHHCCC-CEEEEEECCHHH------HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999861078-816996078235------79999998633983142334587323426665556778998876301212
Q gi|254780779|r 56 LQVISDTVARG-GRILFVATKSQA------SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQ 128 (278)
Q Consensus 56 ~~~i~~i~~~g-g~ILFVgTk~~~------~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~ 128 (278)
...+..+..+| .+|+|++..... ..-..+..+..|..+....+..+.-+-.....
T Consensus 6 ~~a~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 67 (132)
T 3egc_A 6 RTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRD------------------ 67 (132)
T ss_dssp HHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHH------------------
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHH------------------
T ss_conf 88899999769955866127721220335558999999983998543013247752677899------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCC--E----EEEECCCC
Q ss_conf 677467887665567776434433221135957999438877123212343398--1----45403677
Q gi|254780779|r 129 GFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRI--P----IVAVVDTN 191 (278)
Q Consensus 129 ~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~I--P----vIaivDTn 191 (278)
.+.+.+ .....|+++|+.+-..=.-+++.+...|| | |+|+-|++
T Consensus 68 ---------------~~~~~~----~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~iP~di~vvg~d~~~ 117 (132)
T 3egc_A 68 ---------------GAIKVL----TGADRPTALLTSSHRITEGAMQALNVLGLRYGPDVEIVSFDNLP 117 (132)
T ss_dssp ---------------HHHHHH----TC-CCCSEEEESSHHHHHHHHHHHHHHTCCBTTTBEEEEESCCG
T ss_pred ---------------HHHHHH----HCCCCCCHHHCCCCCCCCCCEEHHHCCCCCCCCCEEEEECCCHH
T ss_conf ---------------999998----54788630220232002451312220598567540145317768
No 122
>>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima} (A:)
Probab=54.98 E-value=8.1 Score=19.41 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=34.2
Q ss_pred CCCCEEEEECCCCC---CHHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEECCCCHHHHHHHHHH
Q ss_conf 35957999438877---123212343398145403677670--01152032157726899999999
Q gi|254780779|r 157 GLPDLMFVVDTNRE---KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPGNDDSSRSIALFCDL 217 (278)
Q Consensus 157 ~lP~~iiv~d~~~e---~~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~NDds~~si~l~~~~ 217 (278)
.+||+++|=+-..- ...+-+...+.||++|++--+--- .+=.+++|.++...+.++-+-..
T Consensus 78 ~~PDLilIDGGkgQl~~a~~~l~~l~~~i~v~glaK~~e~i~~~~~~i~L~~~~~~l~lLq~irDE 143 (159)
T 2nrr_A 78 PLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKKEETVVFENREIHLPHDHPVLRLLVQIRDE 143 (159)
T ss_dssp CCCSEEEESSCHHHHHHHHHHHHHTTCCCCEEEEC----CEEETTEEECCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 987489975979999999999998530243000345433323589734269999899999999999
No 123
>>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A (A:1-91)
Probab=53.55 E-value=17 Score=17.36 Aligned_cols=31 Identities=13% Similarity=0.347 Sum_probs=26.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf 9579994388771232123433981454036
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAVVD 189 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIaivD 189 (278)
||++|..........+.+-+++|||++-+=|
T Consensus 60 PDlii~~~~~~~~~~~~~L~~~gi~v~~~~~ 90 (91)
T 2r7a_A 60 PDSVITWQDAGPQIVLDQLRAQKVNVVTLPR 90 (91)
T ss_dssp CSEEEEETTCSCHHHHHHHHHTTCEEEEECC
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCEEEEECC
T ss_conf 9807853365402677898852835998425
No 124
>>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, thiamin thiazolone diphosphate, inhibitor; HET: TZD; 1.00A {Pseudomonas putida} (A:174-341)
Probab=52.36 E-value=17 Score=17.24 Aligned_cols=130 Identities=8% Similarity=-0.068 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEE-ECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999861078816996-078---235799999986339831423345873234266655567789988763012
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFV-ATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKE 126 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFV-gTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~ 126 (278)
.+.+++..| .+-++.+|| |-. ..+.+.+.++|+++|.|+++.-.-.|.+-.-. ...-+.
T Consensus 16 ~i~~~~~~L----~~AkrPvii~G~~~~~~~a~~~l~~la~~~~~pv~~t~~~~g~~~~~~-------------~~~~g~ 78 (168)
T 1q6z_A 16 DLDILVKAL----NSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTR-------------HPCFRG 78 (168)
T ss_dssp HHHHHHHHH----HHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSSCSBCCSCTT-------------STTEEE
T ss_pred HHHHHHHHH----HHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC-------------CCCCCC
T ss_conf 999999999----737587366145430126676789999973587022023455557777-------------843346
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCC---CEEEE
Q ss_conf 126774678876655677764344332211359579994388771232123433981454036776700115---20321
Q gi|254780779|r 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVD---YVIPG 203 (278)
Q Consensus 127 ~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~id---ypIP~ 203 (278)
+..+......... .-.|+|++++..-....-.-.....-+.--++.-|.||..+. .-++.
T Consensus 79 ~g~~~~~~~~~~~-----------------~~aDlil~vG~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~i 141 (168)
T 1q6z_A 79 LMPAGIAAISQLL-----------------EGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAI 141 (168)
T ss_dssp ECCSCHHHHHHHH-----------------TTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHCSSSEEE
T ss_pred CCCCCCHHHHHHH-----------------HCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCCH
T ss_conf 5223548999998-----------------54662023245333322246753468886269981798994676546312
Q ss_pred CCCCHHHHHHH
Q ss_conf 57726899999
Q gi|254780779|r 204 NDDSSRSIALF 214 (278)
Q Consensus 204 NDds~~si~l~ 214 (278)
.-|...++.-+
T Consensus 142 ~gd~~~~l~~L 152 (168)
T 1q6z_A 142 VADIGAMASAL 152 (168)
T ss_dssp ESCHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 53399999999
No 125
>>1c4k_A Protein (ornithine decarboxylase); HET: PLP GTP; 2.70A {Lactobacillus SP} (A:1-108)
Probab=51.23 E-value=7.9 Score=19.47 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=45.1
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCC-C----HHCCCEEEE-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 5799943887712321234339814540367767-0----011520321-57726899999999999999
Q gi|254780779|r 160 DLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSN-P----DLVDYVIPG-NDDSSRSIALFCDLVASAAI 223 (278)
Q Consensus 160 ~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~d-p----~~idypIP~-NDds~~si~l~~~~i~~ai~ 223 (278)
.||++.|.....++.-+...+||||+-+++.... | ..|+-.|.- |+. +..|+.+.|-.|..
T Consensus 34 AAVVisD~~~g~l~~i~~tgF~IPvFv~~~~~~~v~~~~l~~i~gVi~l~~~~---~~~~y~rQle~AA~ 100 (108)
T 1c4k_A 34 GAVIAMDYETDVIDAADATKFGIPVFAVTKDAQAISADELKKIFHIIDLENKF---DATVNAREIETAVN 100 (108)
T ss_dssp EEEEEETTCHHHHHHHHTTCSCCCEEEEESCSTTSCHHHHTTCCEEEECC--C---CSTTHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCEEEECCCC---HHHHHHHHHHHHHH
T ss_conf 99997264256999999628999989982554548977875265179833675---05568999999999
No 126
>>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} (A:1-121,A:252-293)
Probab=50.48 E-value=19 Score=17.05 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=33.3
Q ss_pred CCCCEEEEECCCC-CCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCC
Q ss_conf 3595799943887-7123212343398145403677670011520321577
Q gi|254780779|r 157 GLPDLMFVVDTNR-EKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDD 206 (278)
Q Consensus 157 ~lP~~iiv~d~~~-e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDd 206 (278)
+.||.++++.... +...+.+....+||+|.+ |..++....++......|
T Consensus 75 ~~vDGiIl~~~~~~~~~~~~~l~~~~iPvVli-d~~~~~~~~~sV~~d~~~ 124 (163)
T 2iks_A 75 RQVDAIIVSTSLPPEHPFYQRWANDPFPIVAL-DRALDREHFTSVVGAHRD 124 (163)
T ss_dssp TTCSEEEECCSSCTTCHHHHTTTTSSSCEEEE-ESCCCTTTCEEEEECHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCEEEE-ECCCCCCCCCCCCCCHHH
T ss_conf 54435788314332125777765169768998-414433335643454999
No 127
>>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:161-292)
Probab=50.13 E-value=19 Score=17.02 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=55.5
Q ss_pred HHHHHHHHHCCC-CEEEEEECCHHHH------HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999861078-8169960782357------999999863398314233458732342666555677899887630121
Q gi|254780779|r 55 ALQVISDTVARG-GRILFVATKSQAS------DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 55 A~~~i~~i~~~g-g~ILFVgTk~~~~------~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
+...++.+.++| .+|.|||...... .-........|..+....+..+.... ....+.+.
T Consensus 5 ~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~------------- 70 (132)
T 1qpz_A 5 GYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEP-ESGYRAMQ------------- 70 (132)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSH-HHHHHHHH-------------
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCH-HHHHHHHH-------------
T ss_conf 9999999997599859998288555317899988999999859999822189543426-67999999-------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 26774678876655677764344332211359579994388771232123433981------4540367
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
........|+++|+.+-.-=.-+++.+.++||- |+|+-|+
T Consensus 71 -----------------------~~~~~~~~~~aii~~~~~~a~g~~~~l~~~g~~ip~di~i~~fd~~ 116 (132)
T 1qpz_A 71 -----------------------QILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNV 116 (132)
T ss_dssp -----------------------HHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred -----------------------HHHHCCCCCEEEEECCHHHHHHCCHHHHHCCCCCCCCEEEEEECCC
T ss_conf -----------------------9981799980899777099874022698739978987599987883
No 128
>>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:110-241)
Probab=50.13 E-value=19 Score=17.02 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=56.9
Q ss_pred HHHHHHHHHCCC-CEEEEEECCHHHH------HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999861078-8169960782357------999999863398314233458732342666555677899887630121
Q gi|254780779|r 55 ALQVISDTVARG-GRILFVATKSQAS------DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 55 A~~~i~~i~~~g-g~ILFVgTk~~~~------~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
+...++.+.++| .+|.|||...... .-........|..+....+..+.... ....+.+.
T Consensus 5 ~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~------------- 70 (132)
T 1dbq_A 5 GYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEP-ESGYRAMQ------------- 70 (132)
T ss_dssp HHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSH-HHHHHHHH-------------
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH-HHHHHHHH-------------
T ss_conf 9999999986599669996376312478999976678999808997720023576777-77899999-------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 26774678876655677764344332211359579994388771232123433981------4540367
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
........|+++|+.+-.-=.-+++.+.++||- |+|+-|+
T Consensus 71 -----------------------~~~~~~~~~~aii~~~~~~a~g~~~~l~~~g~~ip~di~i~~fd~~ 116 (132)
T 1dbq_A 71 -----------------------QILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNV 116 (132)
T ss_dssp -----------------------HHHTSSSCCSEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred -----------------------HHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf -----------------------9984599984588557899999999999869999975699960682
No 129
>>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), homoserine O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} (A:)
Probab=49.91 E-value=17 Score=17.30 Aligned_cols=30 Identities=10% Similarity=0.001 Sum_probs=18.8
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 107881699607823579999998633983
Q gi|254780779|r 63 VARGGRILFVATKSQASDCVMEAAKRSAQY 92 (278)
Q Consensus 63 ~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~ 92 (278)
...+.+|++|.+..+............+..
T Consensus 44 ~~~~~~i~ild~~~~~~~~~~~~~~~l~~~ 73 (312)
T 2h2w_A 44 DIRPLEILILNLMPDKIKTEIQLLRLLGNT 73 (312)
T ss_dssp -CCCEEEEEECCCSSHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 664325788706885178899999986688
No 130
>>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:109-242)
Probab=49.88 E-value=18 Score=17.14 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCE-EEEECCCCCCCHHCCC
Q ss_conf 9579994388771232123433981-4540367767001152
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIP-IVAVVDTNSNPDLVDY 199 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IP-vIaivDTn~dp~~idy 199 (278)
|++||+.+-.--.-+++-...+||| =|.++-.|.+|.-.++
T Consensus 80 ~~ai~~~~~~~a~g~~~al~~~g~~~di~i~g~d~~~~~~~~ 121 (134)
T 3g1w_A 80 LAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDKGTLDL 121 (134)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
T ss_conf 888997774899999999997699998399997896999999
No 131
>>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} (A:184-315)
Probab=49.88 E-value=19 Score=16.99 Aligned_cols=101 Identities=13% Similarity=0.004 Sum_probs=68.3
Q ss_pred CCCCEEEEEECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 078816996078---23579999998633983142334587323426665556778998876301212677467887665
Q gi|254780779|r 64 ARGGRILFVATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIER 140 (278)
Q Consensus 64 ~~gg~ILFVgTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r 140 (278)
...+=++++|.. ..+.+.+.++|+++|.|+++...--|.+-.-
T Consensus 12 ~A~rPvii~G~g~~~~~~~~~l~~lae~~~iPv~~t~~~kg~~~~~---------------------------------- 57 (132)
T 1efv_A 12 TGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVP---------------------------------- 57 (132)
T ss_dssp GGCSEEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSC----------------------------------
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCC----------------------------------
T ss_conf 4575899867761788899999999998699189747443078999----------------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEE-CCCCCC-CHHCCCEEEEC
Q ss_conf 56777643443322113595799943887712321234339814540-367767-00115203215
Q gi|254780779|r 141 KRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAV-VDTNSN-PDLVDYVIPGN 204 (278)
Q Consensus 141 ~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai-vDTn~d-p~~idypIP~N 204 (278)
.-++-|...+-.-+|+++++++.-... ..-...-.-++|.| +|.+.. -...|++|-|+
T Consensus 58 -----~p~~~G~~g~~~~aDlil~vG~~~~~~-~~~~~~~~~~~i~I~~d~~~~~~~~~d~~i~~d 117 (132)
T 1efv_A 58 -----NDMQVGQTGKIVAPELYIAVGISGAIQ-HLAGMKDSKTIVAINKDPEAPIFQVADYGIVAD 117 (132)
T ss_dssp -----GGGBBSTTSBCCCCSEEEEESCCCCHH-HHTTTTTCSEEEEEESCTTCGGGGTCSEEEESC
T ss_pred -----CHHHCCCCCCCCCCCEEEEECCCCCHH-HHCCCCCCCEEEEEECCCCCCCCCCCCEEEECC
T ss_conf -----176406678524888999976257567-752688887799944899998644488789767
No 132
>>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} (A:1-109,A:256-284)
Probab=49.27 E-value=20 Score=16.93 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=38.2
Q ss_pred CCCCCEEEEECC--CCCCHHHHHHHHCCCEEEEECCCCCCCH-----HCCCEEEECC-CCHHHHHHHHHHHHH
Q ss_conf 135957999438--8771232123433981454036776700-----1152032157-726899999999999
Q gi|254780779|r 156 GGLPDLMFVVDT--NREKLAIQEARRLRIPIVAVVDTNSNPD-----LVDYVIPGND-DSSRSIALFCDLVAS 220 (278)
Q Consensus 156 ~~lP~~iiv~d~--~~e~~Av~EA~kl~IPvIaivDTn~dp~-----~idypIP~ND-ds~~si~l~~~~i~~ 220 (278)
.+-+|++++.-. ....-++..+..-|||+|.+-..-.++. ..||.=-|-| ...+|-+.+.+-+++
T Consensus 55 ~~~vDGIIi~~~~~~~~~~~i~~l~~~gIPvV~id~~~~~~~~~~v~~~d~~~ag~~~~~~~~~~~~~~~~~~ 127 (138)
T 8abp_A 55 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAPDVHGYKSSEMLYNWVAK 127 (138)
T ss_dssp HTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHC
T ss_conf 7599989980532345589999999739988999545434443446765455305999999999999999857
No 133
>>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} (B:)
Probab=49.07 E-value=20 Score=16.91 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=22.8
Q ss_pred CCEEEEECCC------------CCCHHHHHHHHCCCEEEEECC
Q ss_conf 9579994388------------771232123433981454036
Q gi|254780779|r 159 PDLMFVVDTN------------REKLAIQEARRLRIPIVAVVD 189 (278)
Q Consensus 159 P~~iiv~d~~------------~e~~Av~EA~kl~IPvIaivD 189 (278)
+|+||+.... ....+++++..-++|++|||=
T Consensus 43 ~D~iil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~ 85 (201)
T 1gpw_B 43 YDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCL 85 (201)
T ss_dssp CSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETH
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEHHH
T ss_conf 5857978998277889998864618899999860884651337
No 134
>>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* (A:202-364)
Probab=48.45 E-value=20 Score=16.85 Aligned_cols=131 Identities=8% Similarity=0.033 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHCCCCEEEEE-ECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999861078816996-078---23579999998633983142334587323426665556778998876301212
Q gi|254780779|r 53 QKALQVISDTVARGGRILFV-ATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQ 128 (278)
Q Consensus 53 ~~A~~~i~~i~~~gg~ILFV-gTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~ 128 (278)
..+..-+.+...+.++.+|+ |.. ..+.+.+.++|+++|.|+++.-+--|.+-.=. ...-|.+.
T Consensus 14 ~~~i~~~~~~l~~a~rP~ii~G~~~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~~~e~~-------------p~~~G~~~ 80 (163)
T 2vbf_A 14 QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPITTLNFGKSAVDESL-------------PSFLGIYN 80 (163)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECSTTTTSSCTTS-------------TTEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-------------CCCCCCCC
T ss_conf 25899999999733551787411233310466777776414787423454334345788-------------65666652
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCC
Q ss_conf 67-74678876655677764344332211359579994388771232123433981454036776700115203215772
Q gi|254780779|r 129 GF-TKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDS 207 (278)
Q Consensus 129 ~~-tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds 207 (278)
+. .-+.... .-.-.|+|+++++.-.... ........+-.-++.-|.||..++.-.+..-|.
T Consensus 81 g~~~~~~~~~-----------------~~~~aDlii~iG~~~~~~~-~~~~~~~~~~~~~I~i~~d~~~~~~~~~~~~d~ 142 (163)
T 2vbf_A 81 GKLSEISLKN-----------------FVESADFILMLGVKLTDSS-TGAFTHHLDENKMISLNIDEGIIFNKVVEDFDF 142 (163)
T ss_dssp GGGSCHHHHH-----------------HHHHCSEEEEESCCCCGGG-TTTTCCCCCGGGEEEECSSCEEETTEEECSSCH
T ss_pred CCCCCCHHHH-----------------HHCCCCCEEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHH
T ss_conf 3555312443-----------------3036651047620013332-111233233322334577778873530325667
Q ss_pred HHHHHHH
Q ss_conf 6899999
Q gi|254780779|r 208 SRSIALF 214 (278)
Q Consensus 208 ~~si~l~ 214 (278)
...+.-+
T Consensus 143 ~~~l~~L 149 (163)
T 2vbf_A 143 RAVVSSL 149 (163)
T ss_dssp HHHHHTG
T ss_pred HHHHHHH
T ss_conf 7789999
No 135
>>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} (A:124-242)
Probab=48.12 E-value=20 Score=16.82 Aligned_cols=93 Identities=8% Similarity=0.102 Sum_probs=63.6
Q ss_pred CCCCEEEEEECCH----HHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 0788169960782----357999999863398314233458732342666555677899887630121267746788766
Q gi|254780779|r 64 ARGGRILFVATKS----QASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIE 139 (278)
Q Consensus 64 ~~gg~ILFVgTk~----~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~ 139 (278)
....+|-++...- ...+.+.+..++.|.-.+...+.+=.-|+|..+-.+++.
T Consensus 14 ~~~~~v~ii~~d~~~g~~~~~~~~~~l~~~G~~iv~~~~~~~~~~d~~~~i~~i~~------------------------ 69 (119)
T 3hut_A 14 DGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIED------------------------ 69 (119)
T ss_dssp TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH------------------------
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHH------------------------
T ss_conf 07816999605672658999998644540697899999559987311589999986------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHCCCEEEEE-CCCCCCCHHC
Q ss_conf 5567776434433221135957999438877-12321234339814540-3677670011
Q gi|254780779|r 140 RKRDKLKRALDGIRDMGGLPDLMFVVDTNRE-KLAIQEARRLRIPIVAV-VDTNSNPDLV 197 (278)
Q Consensus 140 r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e-~~Av~EA~kl~IPvIai-vDTn~dp~~i 197 (278)
.-||+||+.....+ ...++.++++|.+..-+ .++.++|..+
T Consensus 70 -----------------~~~d~v~~~~~~~~~~~i~~~~~~~G~~~~~~~~~~~~~~~~~ 112 (119)
T 3hut_A 70 -----------------EAPQAIYLAXAYEDAAPFLRALRARGSALPVYGSSALYSPKFI 112 (119)
T ss_dssp -----------------HCCSEEEEESCHHHHHHHHHHHHHTTCCCCEEECGGGCSHHHH
T ss_pred -----------------CCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
T ss_conf -----------------5999999973668899999999981999865642056776776
No 136
>>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} (A:1-114,A:191-214)
Probab=47.77 E-value=21 Score=16.78 Aligned_cols=50 Identities=8% Similarity=-0.014 Sum_probs=30.4
Q ss_pred CCCEEEEECCC----CCCHHHHHHHHCCCEEEE------ECCCCCCCHHCCCEEEECCCC
Q ss_conf 59579994388----771232123433981454------036776700115203215772
Q gi|254780779|r 158 LPDLMFVVDTN----REKLAIQEARRLRIPIVA------VVDTNSNPDLVDYVIPGNDDS 207 (278)
Q Consensus 158 lP~~iiv~d~~----~e~~Av~EA~kl~IPvIa------ivDTn~dp~~idypIP~NDds 207 (278)
-...+++-+.. ....-+..|...|||||. ++..+.-.+.=.|.+++...+
T Consensus 38 ~~ThlV~~~~~~~~~~~t~K~~~A~~~gi~IVs~~Wl~dci~~~~~l~e~~y~l~~~~~~ 97 (138)
T 1t15_A 38 ETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVN 97 (138)
T ss_dssp TCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTTSCCCGGGGBCCEETTT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCC
T ss_conf 841899806865112312999999984996556999999999487388888212234210
No 137
>>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A (A:1-156)
Probab=47.57 E-value=18 Score=17.15 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=31.4
Q ss_pred CCCCCEEEEECCCCCCH---HHHHHHHCCCEEEEECCCCCCCHHCCCE--EEECCCCHH
Q ss_conf 13595799943887712---3212343398145403677670011520--321577268
Q gi|254780779|r 156 GGLPDLMFVVDTNREKL---AIQEARRLRIPIVAVVDTNSNPDLVDYV--IPGNDDSSR 209 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~---Av~EA~kl~IPvIaivDTn~dp~~idyp--IP~NDds~~ 209 (278)
..+||+++|=.-..--. .+-+..-++||++||+--+---..-.-| +|-|+.+..
T Consensus 82 ~~~PDLilIDGG~gQl~~a~~vl~~l~~~ipv~glaK~~e~i~~~~~~i~l~~~~~~l~ 140 (156)
T 2nrt_A 82 HPLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKKEETVVFENREIHLPHDHPVLR 140 (156)
T ss_dssp SCCCSEEEESSSHHHHHHHHHHHHHTTCCCCEEEECTTTCCEEETTEEECCCTTCHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCEECCCCCEEECCCCCHHHH
T ss_conf 89975999859799999999998865202015430244332238994244599998999
No 138
>>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* (A:105-237,A:281-313)
Probab=47.53 E-value=21 Score=16.76 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHH------HHHHHHHHHHCCCEECCCC
Q ss_conf 9999999999861078816996078235------7999999863398314233
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATKSQA------SDCVMEAAKRSAQYCVNSK 97 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk~~~------~~~i~~~A~~~~~~yV~~R 97 (278)
.-+.|.+++.+....+++|+|++..+.. ..-+.+.....+...+...
T Consensus 4 aG~~aae~L~~~~~g~~kI~~l~g~~~~~~~~~R~~Gf~~~l~~~gi~v~~~~ 56 (166)
T 2h3h_A 4 AGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDIL 56 (166)
T ss_dssp HHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 89999999999743036542136777606778887543432035543332233
No 139
>>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, structural genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis V583} (A:1-74,A:185-264)
Probab=47.35 E-value=7.9 Score=19.48 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=57.8
Q ss_pred EEECHHHHHH----HHHHHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6753899999----999999999986107881699607823--5799999986339831423345873234266655567
Q gi|254780779|r 41 HIIDLSQTVP----MLQKALQVISDTVARGGRILFVATKSQ--ASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQ 114 (278)
Q Consensus 41 hIIdL~kT~~----~L~~A~~~i~~i~~~gg~ILFVgTk~~--~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~ 114 (278)
-++|++-|+. .+..+..+++.+..+|-.+.|+..++. ....+++........... ++..|.-. .
T Consensus 8 ~~~D~DGtl~~~~~~~p~~~e~l~~L~~~Gi~~~i~Tn~~~~~~~~~~~~l~~~~~~~~~~----~~~~kp~p------~ 77 (154)
T 1yv9_A 8 YLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPA----SLVYTAKA------I 77 (154)
T ss_dssp EEECCBTTTEETTEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCCCCG----GGEEEHSH------H
T ss_pred EEEECCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC----CCCCCHHH------H
T ss_conf 9991899208499838139999999997799789993899998799999998750755331----20477816------7
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 78998876301212677467887665567776434433221135-95799943887712321234339814540367767
Q gi|254780779|r 115 KLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGL-PDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSN 193 (278)
Q Consensus 115 ~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~l-P~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~d 193 (278)
-+ .+- .+.+.-- .++++|.|-... -+.-|+..|+.+|.+..-...
T Consensus 78 ~~----------------------~~~----------~~~~~~~~~~~~~vgdd~~~--Di~~A~~~G~~ti~v~~g~~~ 123 (154)
T 1yv9_A 78 IM----------------------ERA----------IAHLGVEKEQVIMVGDNYET--DIQSGIQNGIDSLLVTSGFTP 123 (154)
T ss_dssp HH----------------------HHH----------HHHHCSCGGGEEEEESCTTT--HHHHHHHHTCEEEEETTSSSC
T ss_pred HH----------------------HHH----------HHHHCCCCCEEEEECCCHHH--HHHHHHHCCCCEEEECCCCCC
T ss_conf 78----------------------788----------99848984549998996278--999999879989998999999
Q ss_pred CH
Q ss_conf 00
Q gi|254780779|r 194 PD 195 (278)
Q Consensus 194 p~ 195 (278)
+.
T Consensus 124 ~~ 125 (154)
T 1yv9_A 124 KS 125 (154)
T ss_dssp SS
T ss_pred HH
T ss_conf 78
No 140
>>3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} (A:350-538,A:612-629)
Probab=47.31 E-value=9.9 Score=18.82 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=17.1
Q ss_pred HHHHHHHCCCEEEEECCCCC
Q ss_conf 32123433981454036776
Q gi|254780779|r 173 AIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 173 Av~EA~kl~IPvIaivDTn~ 192 (278)
.++-|.+.+||+|.++||-.
T Consensus 100 ~i~la~~~~iPlv~lvDtpG 119 (207)
T 3ff6_A 100 AIKDFNREKLPLMIFANWRG 119 (207)
T ss_dssp HHHHHHHTTCCEEEECCCCC
T ss_pred HHHHHCCCCCCEEEEECCCC
T ss_conf 99985326998599963888
No 141
>>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330} (A:144-361)
Probab=47.24 E-value=21 Score=16.73 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCE--------ECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999999986107881699607823579999998633983--------1423345873234266655567789
Q gi|254780779|r 46 SQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQY--------CVNSKWLGGMMTNWKTVSQSIQKLR 117 (278)
Q Consensus 46 ~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~--------yV~~RWlGG~LTN~~ti~~si~~l~ 117 (278)
..|+..+.....|++.+...+|.|||.|.--..+..........-.+ -..+-.+.|-...+.....+ ...
T Consensus 12 ~~~l~~l~~~~~~l~~~~~~~~~ili~G~tgSGKTT~l~aL~~~~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~--~~~ 89 (218)
T 2gza_A 12 LLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPS--EAK 89 (218)
T ss_dssp HHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC------
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCEEEEEC--CCC
T ss_conf 540100499999999999808848998079886689999999764213550575054443145456631123321--464
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC--HHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 988763012126774678876655677764344332211359579994388771--232123433981454036776700
Q gi|254780779|r 118 DLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK--LAIQEARRLRIPIVAVVDTNSNPD 195 (278)
Q Consensus 118 ~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~--~Av~EA~kl~IPvIaivDTn~dp~ 195 (278)
..+-...+-.+.+. .-|..-||.++|--..... .++.+|..-|-++++=+-.++-.+
T Consensus 90 ------~~~~~~~~~~~l~~---------------~~lR~~pd~iivgEiR~~e~~~~~~~~~~~G~~~~tT~HA~s~~~ 148 (218)
T 2gza_A 90 ------EEENAPVTAATLLR---------------SCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCEL 148 (218)
T ss_dssp ------------CCHHHHHH---------------HHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHH
T ss_pred ------CCCCCCCCHHHHHH---------------HHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHH
T ss_conf ------36764222988767---------------761789985024323537699999999708980799768799899
Q ss_pred ----HCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf ----115203215772689999999999999
Q gi|254780779|r 196 ----LVDYVIPGNDDSSRSIALFCDLVASAA 222 (278)
Q Consensus 196 ----~idypIP~NDds~~si~l~~~~i~~ai 222 (278)
..++..+.+..+--....+...+++++
T Consensus 149 a~~Rl~~~~~~~~~~~~~~~~~i~~~i~~~~ 179 (218)
T 2gza_A 149 TFERLALMVLQNRQGRQLPYEIIRRLLYLVV 179 (218)
T ss_dssp HHHHHHHHHTTSTTGGGSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
T ss_conf 9999999875014556899999999999758
No 142
>>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} (A:1-245,A:408-424)
Probab=46.94 E-value=21 Score=16.70 Aligned_cols=129 Identities=18% Similarity=0.130 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999986107881699607823579999998633983142334587323426665556778998876301212
Q gi|254780779|r 49 VPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQ 128 (278)
Q Consensus 49 ~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~ 128 (278)
.-.+.-...+.+.+++.|=.|.|+++......+-........... -+.................+..+...
T Consensus 23 ~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------ 93 (262)
T 2iya_A 23 HGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATPVVYDS---ILPKESNPEESWPEDQESAMGLFLDE------ 93 (262)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCEEEECCC---CSCCTTCTTCCCCSSHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEECCC---CCCCCCCCCCCCHHHHHHHHHHHHHH------
T ss_conf 637999999999999789989999682166678756985661177---66310132223504578999999999------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEE
Q ss_conf 67746788766556777643443322113595799943887712321234339814540367767001152032
Q gi|254780779|r 129 GFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIP 202 (278)
Q Consensus 129 ~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP 202 (278)
..+....+...+.+ ..||+++ .|... ..+..=|.++|||.+.+.-+...+....+++|
T Consensus 94 ---------~~~~~~~~~~~~~~-----~~~d~ii-~d~~~-~~~~~vA~~~giP~v~~~~~~~~~~~~~~~~~ 151 (262)
T 2iya_A 94 ---------AVRVLPQLEDAYAD-----DRPDLIV-YDIAS-WPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVP 151 (262)
T ss_dssp ---------HHHHHHHHHHHTTT-----SCCSEEE-EETTC-THHHHHHHHHTCCEEEEESSCCCCTTHHHHSG
T ss_pred ---------HHHHHHHHHHHHHC-----CCCCEEE-ECCCC-HHHHHHHHHHHCCEEEEECCCCHHHHHCCHHH
T ss_conf ---------99999999999844-----6983895-13322-16999999851454898413211222100010
No 143
>>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} (A:110-229)
Probab=46.64 E-value=21 Score=16.67 Aligned_cols=90 Identities=8% Similarity=0.126 Sum_probs=62.9
Q ss_pred CCCCEEEEEECCHHH--HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 078816996078235--799999986339831423345873234266655567789988763012126774678876655
Q gi|254780779|r 64 ARGGRILFVATKSQA--SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERK 141 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~--~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~ 141 (278)
...++|-|++..+.. ..-..+.++..+...+..+|.++-.+= .+.-...+.|
T Consensus 15 ~~~~~ig~i~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l---------------------- 68 (120)
T 2hqb_A 15 SETHKVGVIAAFPWQPEVEGFVDGAKYXNESEAFVRYVGEWTDA----DKALELFQEL---------------------- 68 (120)
T ss_dssp CSSSEEEEEESCTTCHHHHHHHHHHHHTTCCEEEEEECSSSSCH----HHHHHHHHHH----------------------
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHH----HHHHHHHHHH----------------------
T ss_conf 67884148834016288889999987414541699974882220----4799999999----------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 677764344332211359579994388771232123433981454036776
Q gi|254780779|r 142 RDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 142 ~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~ 192 (278)
+.+-||+||..+-.--.-+++.++..|+.|||+-|..+
T Consensus 69 -------------~~~~~d~I~~~nD~~A~g~~~a~~~~g~~ViG~d~~~~ 106 (120)
T 2hqb_A 69 -------------QKEQVDVFYPAGDGYHVPVVEAIKDQGDFAIGYVGDQA 106 (120)
T ss_dssp -------------HTTTCCEEECCCTTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred -------------HHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCC
T ss_conf -------------85055467750588555899999975974530036621
No 144
>>1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} (A:1-221,A:381-416)
Probab=46.27 E-value=22 Score=16.63 Aligned_cols=124 Identities=10% Similarity=-0.058 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999998610788169960782357999999863398314233----45873234266655567789988763012
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSK----WLGGMMTNWKTVSQSIQKLRDLEELLNKE 126 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~R----WlGG~LTN~~ti~~si~~l~~l~~~~~~~ 126 (278)
.+.-...+-+.+.+.|=.|.|+++......+-. .|..++... +.................+..+
T Consensus 13 Hv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 80 (257)
T 1rrv_A 13 DVEIGVALADRLKALGVQTRMCAPPAAEERLAE-----VGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAAMT------- 80 (257)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH-----HTCCEEECSCCGGGCCCTTSCCCCHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH-----CCCEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHH-------
T ss_conf 899999999999988998999968567778987-----79759986872665124552023357899879999-------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEE
Q ss_conf 12677467887665567776434433221135957999438877123212343398145403677670011520321
Q gi|254780779|r 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPG 203 (278)
Q Consensus 127 ~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ 203 (278)
...+...+.-+. ...|+..+++.-.....+..=|.++|||++.+.=+.+......++.+.
T Consensus 81 ---------------~~~~~~~~~~l~--~~~~~~d~vi~d~~~~~~~~vA~~~gIP~v~~~~~~~~~~~~~~~~~~ 140 (257)
T 1rrv_A 81 ---------------VEMQFDAVPGAA--EGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAY 140 (257)
T ss_dssp ---------------HHHHHHHHHHHT--TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCB
T ss_pred ---------------HHHHHHHHHHHH--HCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ---------------999999999998--438980999968315699999998520334334565211234442124
No 145
>>2a2l_A Unknown; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 2.20A {Klebsiella pneumoniae} (A:)
Probab=45.83 E-value=9.8 Score=18.86 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=20.4
Q ss_pred HHHHHHHHCCCEE-EEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 2321234339814-54036776700115203215772689999999999999
Q gi|254780779|r 172 LAIQEARRLRIPI-VAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAA 222 (278)
Q Consensus 172 ~Av~EA~kl~IPv-IaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai 222 (278)
.|+.+|.++|+|+ |++||.+..+- +..-.+.-...++.+..+.---+.
T Consensus 23 ~a~~~A~~~g~~v~i~Vvd~~G~~l---~~~r~dga~~~s~~~a~~KA~ta~ 71 (145)
T 2a2l_A 23 AVEKKATEINVAVVFSVVDRGGNTL---LIQRMDEAFVSSCDISLNKAWSAC 71 (145)
T ss_dssp HHHHHHHHTTCCCEEEEEETTSCEE---EEEECTTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEECCCCCEE---EEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999829968999995999999---999559987035999999999998
No 146
>>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:99-232)
Probab=45.77 E-value=22 Score=16.59 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=26.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 359579994388771232123433981------4540367
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
..|++||+.+-..-.-+++.++.+||. |+|+=|+
T Consensus 81 ~~~~aii~~~d~~a~~~~~~l~~~g~~vp~di~ii~~d~~ 120 (134)
T 2h0a_A 81 SPPLNVFAGADQVALGVLEEAVRLGLTPGRDVRVLGFDGH 120 (134)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTSCTTTTSEEEEEESCC
T ss_pred CCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 6774341210477888888886427642134322122585
No 147
>>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A (A:)
Probab=44.48 E-value=23 Score=16.46 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=22.9
Q ss_pred HHHHHHHHHHH--HCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 77643443322--113595799943887712321234339814540
Q gi|254780779|r 144 KLKRALDGIRD--MGGLPDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 144 kl~k~lgGi~~--m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
++-..+||.-. +++..+.+++ ......--++.|.++|||||..
T Consensus 54 ~~i~~~Gg~~~~~v~~~~t~lI~-~~~~~~~K~~~A~~~~i~iV~~ 98 (109)
T 2k6g_A 54 SLIERYGGKVTGNVSKKTNYLVM-GRDSGQSKSDKAAALGTKIIDE 98 (109)
T ss_dssp HHHHHTTCEEESSCCTTCCEEEE-CBCCCHHHHHHHHHHTCEEECH
T ss_pred HHHHHHCCEECCCCCCCCCEEEE-CCCCCHHHHHHHHHCCCCEECH
T ss_conf 99998089766763043678998-3899968999999839958169
No 148
>>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} (A:114-248)
Probab=44.31 E-value=23 Score=16.44 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=55.9
Q ss_pred HHHHHHHHH-HHCCCCEEEEEECCHHH------HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999998-61078816996078235------79999998633983142334587323426665556778998876301
Q gi|254780779|r 53 QKALQVISD-TVARGGRILFVATKSQA------SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNK 125 (278)
Q Consensus 53 ~~A~~~i~~-i~~~gg~ILFVgTk~~~------~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~ 125 (278)
..|.+.+.+ +...+++|+|++..+.. .+-+.+..+..+.+.......++.-.- .....+..
T Consensus 6 ~~~~~~l~~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------- 73 (135)
T 1gud_A 6 AKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRI--KALDVATN---------- 73 (135)
T ss_dssp HHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEEEECTTCHH--HHHHHHHH----------
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCHHHHHCCCCCCEEEEECCCHHHH--HHHHHHHH----------
T ss_conf 999999998627786247403687401788887501034553057764035641530158--99999998----------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEE-EEECCCCCCCHH
Q ss_conf 21267746788766556777643443322113595799943887712321234339814-540367767001
Q gi|254780779|r 126 ENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPI-VAVVDTNSNPDL 196 (278)
Q Consensus 126 ~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPv-IaivDTn~dp~~ 196 (278)
. -.-...|+++|+.+-..-.-+++.+...|||= |.++-.|..|..
T Consensus 74 ----------------------~----~~~~~~~~~i~~~~d~~a~g~~~al~~~g~p~~i~v~g~d~~~~~ 119 (135)
T 1gud_A 74 ----------------------V----LQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEA 119 (135)
T ss_dssp ----------------------H----HHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHH
T ss_pred ----------------------H----HHHCCCCCEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHH
T ss_conf ----------------------7----652257412322676999999999997799988389973797999
No 149
>>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} (A:47-276)
Probab=43.84 E-value=9.6 Score=18.93 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=25.1
Q ss_pred HHHHHCCCCCEEEEECCCCC------------CHHHHHHHHCCCEEEEECCCCC
Q ss_conf 33221135957999438877------------1232123433981454036776
Q gi|254780779|r 151 GIRDMGGLPDLMFVVDTNRE------------KLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 151 Gi~~m~~lP~~iiv~d~~~e------------~~Av~EA~kl~IPvIaivDTn~ 192 (278)
|+-...+.|-+++.-|.... .-+++-|.++++|+|.++||-.
T Consensus 45 g~g~i~Gr~v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~~Plv~l~ds~G 98 (230)
T 1vrg_A 45 GVGEINGRKVAVFSQDFTVXGGSLGEXHAKKIVKLLDLALKXGIPVIGINDSGG 98 (230)
T ss_dssp EEEEETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECS
T ss_pred EEEEECCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 999999999999998686524187977624421224557642884899606777
No 150
>>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} (C:)
Probab=43.79 E-value=24 Score=16.39 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=33.0
Q ss_pred HHHHHHHHHHH--HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 67789988763--0121267746788766556777643443322113595799
Q gi|254780779|r 113 IQKLRDLEELL--NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMF 163 (278)
Q Consensus 113 i~~l~~l~~~~--~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ii 163 (278)
+.++++|.... .|+.-.-+-.-.-.+..++.||.+.+|| -+|++.|.--|
T Consensus 13 ldKiREY~~Ksk~~Gg~vD~~Pe~~kel~~el~kL~~~YG~-gDm~~FP~FkF 64 (77)
T 2cly_C 13 VDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGK-ADMNTFPNFTF 64 (77)
T ss_dssp HHHHHHHHHHHTCCSSSSSCCTHHHHHHHHHHHHHHHHHCS-SCTTSCCCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCHHHCCCCCC
T ss_conf 99999998742468998789989999999999999999677-85523868777
No 151
>>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:1-161,A:294-339)
Probab=43.49 E-value=24 Score=16.36 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=29.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 3595799943887712321234339814540367
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDT 190 (278)
+-.|.+|++....+.-.+.++...+||+|-+-+.
T Consensus 117 ~~vdGiIi~~~~~~~~~~~~l~~~~IPvVl~d~~ 150 (207)
T 3h5o_A 117 HRPDGVLITGLSHAEPFERILSQHALPVVYXXDL 150 (207)
T ss_dssp TCCSEEEEECSCCCTTHHHHHHHTTCCEEEEESC
T ss_pred CCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 5764279984033201344442013332001244
No 152
>>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:175-320)
Probab=42.55 E-value=25 Score=16.27 Aligned_cols=34 Identities=3% Similarity=-0.126 Sum_probs=26.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 359579994388771232123433981------4540367
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
..|+++|+.+-.--.-+++.++.+|+- |||+-|+
T Consensus 93 ~~~~aii~~~d~~A~~~~~~l~~~g~~ip~di~vi~fd~~ 132 (146)
T 3h5t_A 93 PDLTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGT 132 (146)
T ss_dssp TTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 7883786078899998899999839998998799998965
No 153
>>2ez9_A Pyruvate oxidase; TPP enzyme, reaction intermediate analogue, oxidoreductase; HET: TDK FAD; 1.60A {Lactobacillus plantarum} (A:189-368,A:555-603)
Probab=42.36 E-value=25 Score=16.25 Aligned_cols=128 Identities=11% Similarity=0.124 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999861078816996078-235799999986339831423345873234266655567789988763012126
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATK-SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQG 129 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk-~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~ 129 (278)
.+.+|+..|.+ -..-++++|-. ..+...+.++|+.+|.|+++.-=-.|.+-+... ..-|.+..
T Consensus 13 ~Ie~a~elL~~---AkrPvIi~G~g~~~a~~~l~~lae~~giPv~tt~~gkg~~pe~hP-------------~~~G~~G~ 76 (229)
T 2ez9_A 13 AVTRLTQTLLA---AERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRYP-------------AYLGSANR 76 (229)
T ss_dssp HHHHHHHHHHH---CSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCT-------------TBCCCCSS
T ss_pred HHHHHHHHHHH---CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC-------------CCCCCCCC
T ss_conf 99888776653---369853344426589999999999869988974023433444433-------------32223222
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHH------CCCEEEE
Q ss_conf 7746788766556777643443322113595799943887712321234339814540367767001------1520321
Q gi|254780779|r 130 FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDL------VDYVIPG 203 (278)
Q Consensus 130 ~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~------idypIP~ 203 (278)
+..+....... -.|+|+++++.-.......-....-++|-| |. ||.. .|.+|.|
T Consensus 77 ~~~~~~~~~i~-----------------~aDlIL~iG~~l~~~~t~~~~~~~~k~I~I-d~--dp~~i~~~~~~d~~I~g 136 (229)
T 2ez9_A 77 VAQKPANEALA-----------------QADVVLFVGNNYPFAEVSKAFKNTRYFLQI-DI--DPAKLGKRHKTDIAVLA 136 (229)
T ss_dssp SSCHHHHHHHH-----------------HCSEEEEESCCCTTTTTTTTTTTCSEEEEE-ES--CGGGTTSSSCCSEEEES
T ss_pred CCCCHHHHCCC-----------------CCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-CC--CHHHHCCCCCCCCCHHH
T ss_conf 34313331022-----------------320233200111123322222455555578-89--98994555444411110
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 5772689999999
Q gi|254780779|r 204 NDDSSRSIALFCD 216 (278)
Q Consensus 204 NDds~~si~l~~~ 216 (278)
|...++.-++.
T Consensus 137 --D~~~~l~~L~e 147 (229)
T 2ez9_A 137 --DAQKTLAAILA 147 (229)
T ss_dssp --CHHHHHHHHHH
T ss_pred --HHHHHHHHHHH
T ss_conf --07999999998
No 154
>>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:162-293)
Probab=42.24 E-value=25 Score=16.24 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHH-----HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999861078816996078235-----799999986339831423345873234266655567789988763012
Q gi|254780779|r 52 LQKALQVISDTVARGGRILFVATKSQA-----SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKE 126 (278)
Q Consensus 52 L~~A~~~i~~i~~~gg~ILFVgTk~~~-----~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~ 126 (278)
.+.|...+.+ ..-.+|+||+..... .....+.....|.++....+..+.-..+......+.++.
T Consensus 5 ~~~a~~~L~~--~G~r~i~~i~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 73 (132)
T 3h5o_A 5 GAAITRHLLS--RGKRRIGFLGAQLDERVXKRLDGYRAALDAADCRDAGLEWLDPQPSSXQXGADXLDRAL--------- 73 (132)
T ss_dssp HHHHHHHHHH--TTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHH--CCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHH---------
T ss_conf 9999999997--59970878640266542200025677776304554310000246236778999999999---------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEE---EEECCC
Q ss_conf 1267746788766556777643443322113595799943887712321234339814---540367
Q gi|254780779|r 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPI---VAVVDT 190 (278)
Q Consensus 127 ~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPv---IaivDT 190 (278)
.....|+++|+.+-.--.-+++.+...|+.+ |+|+-=
T Consensus 74 ---------------------------~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~ii~f 113 (132)
T 3h5o_A 74 ---------------------------AERPDCDALFCCNDDLAIGALARSQQLGIAVPERLAIAGF 113 (132)
T ss_dssp ---------------------------HHCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred ---------------------------HCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf ---------------------------5499983899726456665434687639988986799998
No 155
>>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* (A:308-588)
Probab=42.18 E-value=13 Score=18.12 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=10.0
Q ss_pred HHHHHHCCCEEEEECCC
Q ss_conf 21234339814540367
Q gi|254780779|r 174 IQEARRLRIPIVAVVDT 190 (278)
Q Consensus 174 v~EA~kl~IPvIaivDT 190 (278)
+......++|+|+++--
T Consensus 132 ~~~~~~~~vP~i~vi~g 148 (281)
T 3gf3_A 132 IYSIENSKLPSLEITIR 148 (281)
T ss_dssp HHHHHHHCSCEEEEESS
T ss_pred HHHHHCCCCCEEEEEEC
T ss_conf 99886479987999978
No 156
>>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} (A:1-256,A:463-482)
Probab=42.10 E-value=25 Score=16.23 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCC------CCC-CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998610788169960782357999999863398314233------458-73234266655567789988763
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSK------WLG-GMMTNWKTVSQSIQKLRDLEELL 123 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~R------WlG-G~LTN~~ti~~si~~l~~l~~~~ 123 (278)
++.-.+.+.+.++++|=+|-|+.|-...+.+....+.........-+ +++ +..+. .....-...+..+..
T Consensus 21 Hi~P~l~Lak~La~~G~~VT~~tt~~~~~~~~~~~~~~~~~~~~~i~~~~ip~gl~~~~~~~-~~~~~~~~~~~~~~~-- 97 (276)
T 2pq6_A 21 HINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDG-DVSQDVPTLCQSVRK-- 97 (276)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEECCCCC----------CCHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CHHHHHHHHHHHHHH--
T ss_conf 79999999999997899499993853676675446864434677750323687787543443-103449999999999--
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCC
Q ss_conf 01212677467887665567776434433221135957999438877123212343398145403677
Q gi|254780779|r 124 NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTN 191 (278)
Q Consensus 124 ~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn 191 (278)
.+. ..+.+-..++....++ ..|++| |.|.-. ..|..-|.++|||.+.+.-+.
T Consensus 98 -----~~~----~~~~~ll~~l~~~~~~-----~~~~~v-V~D~f~-~wa~~vA~~lgIP~~~f~~~~ 149 (276)
T 2pq6_A 98 -----NFL----KPYCELLTRLNHSTNV-----PPVTCL-VSDCCM-SFTIQAAEEFELPNVLYFSSS 149 (276)
T ss_dssp -----SSH----HHHHHHHHHHHTCSSS-----CCCCEE-EEETTC-THHHHHHHHTTCCEEEEECSC
T ss_pred -----HHH----HHHHHHHHHHHHHCCC-----CCCEEE-EECCCC-HHHHHHHHHHCCCCEEECCCC
T ss_conf -----999----9999999887775057-----988699-961643-378999999589843300354
No 157
>>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone, THDP, metal, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* (A:196-343)
Probab=41.86 E-value=25 Score=16.20 Aligned_cols=97 Identities=5% Similarity=-0.117 Sum_probs=53.6
Q ss_pred CCEEEEEECC-HHHHHHHHHHHHHCCCEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 8816996078-23579999998633983142334587-323426665556778998876301212677467887665567
Q gi|254780779|r 66 GGRILFVATK-SQASDCVMEAAKRSAQYCVNSKWLGG-MMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRD 143 (278)
Q Consensus 66 gg~ILFVgTk-~~~~~~i~~~A~~~~~~yV~~RWlGG-~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~ 143 (278)
..-++++|.. ..+.+.+.++|++.|.|.++.-+.|. .+-...
T Consensus 25 ~rpviv~G~g~~~a~~~l~~lae~~~~pv~~~~~~~~~~~~~~~------------------------------------ 68 (148)
T 3hww_A 25 KRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCA------------------------------------ 68 (148)
T ss_dssp SCEEEEECBCCHHHHHHHHHHHHHHTCCEEECTTTCSCCSSCCH------------------------------------
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC------------------------------------
T ss_conf 86478740344256899987676404760110256777876454------------------------------------
Q ss_pred HHHHHHHH--HHHHCCCCCEEEEECCCCCCHHHHHHHHC--CCEEEEECCCCCCCHHCCCEEEE
Q ss_conf 77643443--32211359579994388771232123433--98145403677670011520321
Q gi|254780779|r 144 KLKRALDG--IRDMGGLPDLMFVVDTNREKLAIQEARRL--RIPIVAVVDTNSNPDLVDYVIPG 203 (278)
Q Consensus 144 kl~k~lgG--i~~m~~lP~~iiv~d~~~e~~Av~EA~kl--~IPvIaivDTn~dp~~idypIP~ 203 (278)
..++|. ...+-.-+|+|++++..-.........+. +-.+|-+ |.||..+++-.++
T Consensus 69 --~~~~G~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~i---~~d~~~~~~~~~~ 127 (148)
T 3hww_A 69 --DLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIV---DDIEGRLDPAHHR 127 (148)
T ss_dssp --HHHTTSHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCCSEEEEE---ESSCSCCCTTCCS
T ss_pred --CHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEC---CCCCCCCCCCCCC
T ss_conf --2102787677525762078613666655443333224787316970---5873213654345
No 158
>>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: YES; 1.60A {Streptomyces avermitilis ma-4680} (A:)
Probab=41.73 E-value=25 Score=16.19 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=27.0
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHH-----HHCCCEEEEECCCC
Q ss_conf 211359579994388771232123-----43398145403677
Q gi|254780779|r 154 DMGGLPDLMFVVDTNREKLAIQEA-----RRLRIPIVAVVDTN 191 (278)
Q Consensus 154 ~m~~lP~~iiv~d~~~e~~Av~EA-----~kl~IPvIaivDTn 191 (278)
.....||+++|=.-..-+.+..++ ..++||+||++=.+
T Consensus 103 ~~~~~PDLilVDGg~~q~~~~~gv~~~lg~~l~iP~iGvaK~~ 145 (237)
T 3goc_A 103 ALPCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVAKNP 145 (237)
T ss_dssp TSSSCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEESSC
T ss_pred HCCCCCCEEEECCCEEECCCCCCHHHEEEECCCCCEEEEECCE
T ss_conf 6578999999848423468776631113210598867542451
No 159
>>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} (B:62-285)
Probab=41.62 E-value=10 Score=18.68 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=28.8
Q ss_pred HHHHHHCCCCCEEEEECCCCCC------------HHHHHHHHCCCEEEEECCCCC
Q ss_conf 4332211359579994388771------------232123433981454036776
Q gi|254780779|r 150 DGIRDMGGLPDLMFVVDTNREK------------LAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 150 gGi~~m~~lP~~iiv~d~~~e~------------~Av~EA~kl~IPvIaivDTn~ 192 (278)
.|+-.+.+.|=+++--|..... -+++-|.+.+||+|.++||-.
T Consensus 52 tg~g~i~G~~V~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~iPiv~l~dt~G 106 (224)
T 2f9i_B 52 TGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGG 106 (224)
T ss_dssp EEEEEETTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred EEEEEECCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9995322557651232677753557879999999999999961453799927897
No 160
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:111-243)
Probab=41.54 E-value=26 Score=16.17 Aligned_cols=98 Identities=10% Similarity=0.102 Sum_probs=53.0
Q ss_pred HHHHHHHCCC-CEEEEEECCHHH---H---HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999861078-816996078235---7---99999986339831423345873234266655567789988763012126
Q gi|254780779|r 57 QVISDTVARG-GRILFVATKSQA---S---DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQG 129 (278)
Q Consensus 57 ~~i~~i~~~g-g~ILFVgTk~~~---~---~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~ 129 (278)
..+..+..+| .+|+|++..+.. . .-..+...+.|..+-...+..+..+- ....+.+.+
T Consensus 8 ~a~~~L~~~G~~~i~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------- 72 (133)
T 2rgy_A 8 LAAATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSP-EGGYAATCQ-------------- 72 (133)
T ss_dssp HHHHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSH-HHHHHHHHH--------------
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCH-HHHHHHHHH--------------
T ss_conf 02456765300110002467554431111213678998728864312122345678-889999865--------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCCC
Q ss_conf 774678876655677764344332211359579994388771232123433981------45403677
Q gi|254780779|r 130 FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDTN 191 (278)
Q Consensus 130 ~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDTn 191 (278)
.+ .....|++||+.+-..=..+++-|...|+. ++|+-|+.
T Consensus 73 ------------------~l----~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~ivgfd~~~ 118 (133)
T 2rgy_A 73 ------------------LL----ESKAPFTGLFCANDTXAVSALARFQQLGISVPGDVSVIGYDDDY 118 (133)
T ss_dssp ------------------HH----HHTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred ------------------HH----CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf ------------------30----13568753434683676655677765045578521022146818
No 161
>>1xny_A Pccase, propionyl-COA carboxylase complex B subunit, PCC; polyketide, polyketide synthase, acyl-COA carboxylase, carboxyltransferase; HET: 191 BTN; 2.20A {Streptomyces coelicolor} (A:279-530)
Probab=41.44 E-value=11 Score=18.65 Aligned_cols=17 Identities=18% Similarity=0.604 Sum_probs=7.0
Q ss_pred HHHHHHCCCEEEEECCC
Q ss_conf 21234339814540367
Q gi|254780779|r 174 IQEARRLRIPIVAVVDT 190 (278)
Q Consensus 174 v~EA~kl~IPvIaivDT 190 (278)
++-|.+.+||+|.++||
T Consensus 82 i~~a~~~~iPiv~l~dt 98 (252)
T 1xny_A 82 VRTCDAFNVPVLTFVDV 98 (252)
T ss_dssp HHHHHHTTCCEEEEEEE
T ss_pred HHHHHHCCCEEEEEEEC
T ss_conf 99987558638999853
No 162
>>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* (A:186-350)
Probab=41.32 E-value=26 Score=16.15 Aligned_cols=138 Identities=9% Similarity=-0.009 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHCCCCEEEE-EECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999986107881699-6078---23579999998633983142334587323426665556778998876301212
Q gi|254780779|r 53 QKALQVISDTVARGGRILF-VATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQ 128 (278)
Q Consensus 53 ~~A~~~i~~i~~~gg~ILF-VgTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~ 128 (278)
..+..-+.+...+.++.+| ||-. ..+.+.+.++|+++|.|+++.-.-.|.+-.-. ...-|.+.
T Consensus 13 ~~~i~~~~~~L~~A~rPvi~~G~~~~~~~a~~~l~~lae~~~~pv~~t~~~kg~~~~~~-------------p~~~G~~~ 79 (165)
T 2vk8_A 13 KEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQH-------------PRYGGVYV 79 (165)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECTTTTTSSCTTS-------------TTEEEECC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-------------CCCCCCCC
T ss_conf 99999999998745698502488643024999999999864898121410035677788-------------22257555
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCC
Q ss_conf 6-774678876655677764344332211359579994388771232123433981454036776700115203215772
Q gi|254780779|r 129 G-FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDS 207 (278)
Q Consensus 129 ~-~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds 207 (278)
+ +...+.....+ -.|+|++++..-....... .....|--.++.-|.||..+..-.+..---
T Consensus 80 g~~~~~~~~~~l~-----------------~aDlvl~iG~~~~~~~~~~-~~~~~~~~~~I~i~~d~~~~~~~~~~~~~i 141 (165)
T 2vk8_A 80 GTLSKPEVKEAVE-----------------SADLILSVGALLSDFNTGS-FSYSYKTKNIVEFHSDHMKIRNATFPGVQM 141 (165)
T ss_dssp GGGSCHHHHHHHH-----------------TCSEEEEESCCCCTTTTTT-TCCCCCCSCEEEECSSEEEETTEEEETCCH
T ss_pred CCCCHHHHHHHHH-----------------CCCCEEEEEEECCCCCCCC-CCCCCCCCEEEEECCCHHHHCCCCCCCEEE
T ss_conf 5654189999985-----------------5674599985135534687-665677544877435087646765663662
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 68999999999999
Q gi|254780779|r 208 SRSIALFCDLVASA 221 (278)
Q Consensus 208 ~~si~l~~~~i~~a 221 (278)
.-.+..++..+.+.
T Consensus 142 ~~d~~~~l~~L~~~ 155 (165)
T 2vk8_A 142 KFVLQKLLTTIADA 155 (165)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 76899999998876
No 163
>>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} (A:62-304)
Probab=40.84 E-value=12 Score=18.19 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=8.9
Q ss_pred HHHHHHHCCCEEEEECCC
Q ss_conf 321234339814540367
Q gi|254780779|r 173 AIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 173 Av~EA~kl~IPvIaivDT 190 (278)
+++-|.+++||+|.++||
T Consensus 71 ~~~~a~~~~iPlv~l~dt 88 (243)
T 1pix_A 71 ASDTAKTLHVPLVYVLNC 88 (243)
T ss_dssp HHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHCCCCEEEEECC
T ss_conf 999999829998999557
No 164
>>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor; HET: T6P; 2.50A {Escherichia coli} (A:1-98,A:224-255)
Probab=40.57 E-value=26 Score=16.07 Aligned_cols=35 Identities=6% Similarity=-0.067 Sum_probs=27.1
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 1359579994388771232123433981454036776
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~ 192 (278)
.+.+|.++++....+. +..+.+.+||+|.+-....
T Consensus 56 ~~~vDGIIi~~~~~~~--~~~l~~~giPvV~id~~~~ 90 (130)
T 1byk_A 56 RRNIDGVVLFGFTGIT--EEMLAHWQSSLVLLARDAK 90 (130)
T ss_dssp TTTCCEEEEECCTTCC--TTTSGGGSSSEEEESSCCS
T ss_pred HCCCCCEEECCCCCCH--HHHHHHCCCCEEEECCCCC
T ss_conf 3266511210256508--9999976999998166789
No 165
>>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* (A:1-197,A:367-406)
Probab=40.16 E-value=27 Score=16.03 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=30.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 59579994388771232123433981454036776
Q gi|254780779|r 158 LPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 158 lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~ 192 (278)
-||+|++.+......+..-+..+++|+|.-+-+.-
T Consensus 107 ~~DiI~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~ 141 (237)
T 2gek_A 107 DFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTST 141 (237)
T ss_dssp CCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCC
T ss_pred CCCEEEEEEECCCCHHHHHHHHCCCCCCEEEEECC
T ss_conf 77636886403320246678752898521442101
No 166
>>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=39.86 E-value=27 Score=16.00 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEE
Q ss_conf 26774678876655677764344332211359579994388771232123433981454
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVA 186 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIa 186 (278)
.++++.++..+ .++-..+||.-...--++.-+|+-......-++.|.+.|||||.
T Consensus 31 sg~~~~~~~~l----~~~i~~~Gg~~~~~~~~~~t~ii~~~~~~~k~~~a~~~~~~iV~ 85 (129)
T 2d8m_A 31 SGFQNPFRSEL----RDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVR 85 (129)
T ss_dssp ESCCTTHHHHH----HHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEE
T ss_pred ECCCHHHHHHH----HHHHHHCCEEEECCCCCCCCEEEEECCCCHHHHHHHHCCCCCCC
T ss_conf 08980889999----99999818289452157741898722674056777641345678
No 167
>>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} (A:1-218)
Probab=39.11 E-value=28 Score=15.93 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=21.2
Q ss_pred CCEEEEECCC------------CCCHHHHHHHHCCCEEEEEC
Q ss_conf 9579994388------------77123212343398145403
Q gi|254780779|r 159 PDLMFVVDTN------------REKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 159 P~~iiv~d~~------------~e~~Av~EA~kl~IPvIaiv 188 (278)
+|.||+.... ...-+++++...|+|+.|||
T Consensus 45 ~dgiIlpGg~~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC 86 (218)
T 1jvn_A 45 TSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIX 86 (218)
T ss_dssp CSCEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEHH
T ss_conf 998998999977999999998786999999998699499968
No 168
>>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:156-285)
Probab=38.31 E-value=29 Score=15.85 Aligned_cols=95 Identities=7% Similarity=0.027 Sum_probs=56.4
Q ss_pred HHHHHHHCC-CCEEEEEECCHHH------HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999986107-8816996078235------799999986339831423345873234266655567789988763012126
Q gi|254780779|r 57 QVISDTVAR-GGRILFVATKSQA------SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQG 129 (278)
Q Consensus 57 ~~i~~i~~~-gg~ILFVgTk~~~------~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~ 129 (278)
..+..+..+ -.+|+|+|..... .....+.....|.++....+.++..+.....
T Consensus 7 ~a~~~L~~~G~r~I~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 66 (130)
T 3ctp_A 7 MAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEIDFIEFQHDFQVKMLEE-------------------- 66 (130)
T ss_dssp HHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEECSSSCCGGGGGC--------------------
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--------------------
T ss_conf 999999986996699964634541688888762013665135622232100245778999--------------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 774678876655677764344332211359579994388771232123433981------4540367
Q gi|254780779|r 130 FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 130 ~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
+ .+.| .....|+++|+.+-..-..+++.+.++|+. +||+-|+
T Consensus 67 ~---------------~~~l----~~~~~~~ai~~~~d~~A~~~~~~l~~~g~~ip~di~iigfd~~ 114 (130)
T 3ctp_A 67 D---------------INSM----KDIVNYDGIFVFNDIAAATVMRALKKRGVSIPQEVQIIGFDNS 114 (130)
T ss_dssp C---------------CTTG----GGGGGSSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred H---------------HHHH----HHCCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCH
T ss_conf 9---------------9998----5055998455246587899999999849998843332124876
No 169
>>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A* (A:1-87)
Probab=38.28 E-value=16 Score=17.50 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEE
Q ss_conf 957999438877123212343398145
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIV 185 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvI 185 (278)
||+||......+.. +.+-.++|||++
T Consensus 61 PDlVi~~~~~~~~~-~~~l~~~g~~v~ 86 (87)
T 2q8p_A 61 PTHVLSVSTIKDEX-QPFYKQLNXKGY 86 (87)
T ss_dssp CSEEEEEGGGHHHH-HHHHHHHTSCCE
T ss_pred CCEEEEECCCCHHH-HHHHHHHCCCEE
T ss_conf 98899625656899-999875225422
No 170
>>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} (A:1-248,A:453-480)
Probab=38.22 E-value=29 Score=15.84 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHCCCEEC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999998610-788169960782357999999863398314-23345873234266655567789988763012126
Q gi|254780779|r 52 LQKALQVISDTVA-RGGRILFVATKSQASDCVMEAAKRSAQYCV-NSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQG 129 (278)
Q Consensus 52 L~~A~~~i~~i~~-~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV-~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~ 129 (278)
+.-.+.+-+.++. .|=.|=||.|-...............-..+ ...--+.-...... ...
T Consensus 20 i~Pml~LA~~La~~~G~~VT~v~T~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~------------------~~~ 81 (276)
T 2vch_A 20 LIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPVDLTDLSS------------------STR 81 (276)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC-CCTTEEEEECCCCCCTTSCT------------------TCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCC------------------CCC
T ss_conf 99999999999973699899996887414455532556678875145548766555433------------------212
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCC
Q ss_conf 77467887665567776434433221135957999438877123212343398145403677
Q gi|254780779|r 130 FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTN 191 (278)
Q Consensus 130 ~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn 191 (278)
+...-...+.+-...++..+..+..-.+.|++|| .|.-. ..|+..|.++|||.+.+.-..
T Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~cIV-~D~f~-~wa~~vA~~lGIP~~~F~t~~ 141 (276)
T 2vch_A 82 IESRISLTVTRSNPELRKVFDSFVEGGRLPTALV-VDLFG-TDAFDVAVEFHVPPYIFYPTT 141 (276)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEE-ECTTC-GGGHHHHHHTTCCEEEEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE-ECCCC-HHHHHHHHHHCCCCEEECCCC
T ss_conf 7899999999979999999999985178875366-43524-689999998487713420453
No 171
>>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} (A:107-232)
Probab=37.98 E-value=29 Score=15.82 Aligned_cols=87 Identities=11% Similarity=-0.007 Sum_probs=50.1
Q ss_pred HHHHHHHHHCC-CCEEEEEECCHHH------HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999986107-8816996078235------7999999863398314233458732342666555677899887630121
Q gi|254780779|r 55 ALQVISDTVAR-GGRILFVATKSQA------SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 55 A~~~i~~i~~~-gg~ILFVgTk~~~------~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
+...+.++..+ ..+|+|++..... ..-..+.....+.+++...|......- .+..+
T Consensus 4 ~~~~a~~ll~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~------~~~~~----------- 66 (126)
T 3hs3_A 4 GGKESIKLLSKKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLEETPENNPYI------SAQSA----------- 66 (126)
T ss_dssp HHHHHHHTSCTTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSCHHH------HHHHH-----------
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH------HHHHH-----------
T ss_conf 9988877764487269998266210046777678998864347530132035544899------99999-----------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCE
Q ss_conf 26774678876655677764344332211359579994388771232123433981
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP 183 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IP 183 (278)
......|+++|+.+-..-..+++.+...|+-
T Consensus 67 -------------------------~~~~~~~~ai~~~~d~~a~~v~~~l~~~g~~ 97 (126)
T 3hs3_A 67 -------------------------LNKSNQFDAIITVNDLYAAEIIKEAKRRNLK 97 (126)
T ss_dssp -------------------------HHTGGGCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred -------------------------HHCCCCCCEEEECCCHHHHHHHHHHHHCCCC
T ss_conf -------------------------8547899889964858888798999974987
No 172
>>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} (A:277-527)
Probab=37.90 E-value=13 Score=18.08 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=8.2
Q ss_pred HHHHHHHCCCEEEEECCC
Q ss_conf 321234339814540367
Q gi|254780779|r 173 AIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 173 Av~EA~kl~IPvIaivDT 190 (278)
+++-|.+++||+|.++||
T Consensus 81 ~~~~a~~~~iPii~l~d~ 98 (251)
T 1vrg_A 81 FIRFLDAFNIPILTFVDT 98 (251)
T ss_dssp HHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHCCCCEEEEEEC
T ss_conf 999987608626999834
No 173
>>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} (A:)
Probab=37.89 E-value=29 Score=15.81 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEE------CCCCCCCHHCCC
Q ss_conf 26774678876655677764344332--2113595799943887712321234339814540------367767001152
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIR--DMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAV------VDTNSNPDLVDY 199 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~--~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai------vDTn~dp~~idy 199 (278)
.+++..++.. +.++-..+||.- ++......++.-+.... -++.|..+|||||.- +..+.-.+.-+|
T Consensus 30 sg~~~~~~~~----l~~~i~~~Gg~~~~~~~~~tt~vv~~~~~~~--k~~~a~~~~~~iV~~~Wi~~c~~~~~~l~~~~y 103 (112)
T 3l46_A 30 LGFSDEEKTN----MEEMTEMQGGKYLPLGDERCTHLVVEENIVK--DLPFEPSKKLYVVKQEWFWGSIQMDARAGETMY 103 (112)
T ss_dssp ESCCHHHHHH----HHHHHHHTTCEECCTTCTTCSEEEECTTTBS--SCSSCCCSSCEEEEHHHHHHHHHHTSCCCGGGS
T ss_pred ECCCHHHHHH----HHHHHHHCCCEEECCCCCCCEEEEEECCCCH--HHHHHHHCCCCEECHHHHHHHHHHCCCCCHHHE
T ss_conf 3898799999----9999999499881422788249985279974--599998689858549999999991986883641
Q ss_pred EEEE
Q ss_conf 0321
Q gi|254780779|r 200 VIPG 203 (278)
Q Consensus 200 pIP~ 203 (278)
.+|.
T Consensus 104 ~~~~ 107 (112)
T 3l46_A 104 LYEK 107 (112)
T ss_dssp BCCC
T ss_pred ECCC
T ss_conf 1589
No 174
>>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor; HET: T6P; 2.50A {Escherichia coli} (A:99-223)
Probab=37.87 E-value=29 Score=15.81 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=25.4
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHCC---CEEEEECCC
Q ss_conf 113595799943887712321234339---814540367
Q gi|254780779|r 155 MGGLPDLMFVVDTNREKLAIQEARRLR---IPIVAVVDT 190 (278)
Q Consensus 155 m~~lP~~iiv~d~~~e~~Av~EA~kl~---IPvIaivDT 190 (278)
+...|++||+.+-..-.-+++.++..| |-|||+-|+
T Consensus 71 ~~~~~~ai~~~~d~~A~~~~~~l~~~gp~di~iv~fd~~ 109 (125)
T 1byk_A 71 ITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNT 109 (125)
T ss_dssp CCTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEECCC
T ss_pred HCCCCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 135676001132466756899997608652223675981
No 175
>>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha chain; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} (A:79-339)
Probab=37.12 E-value=14 Score=17.95 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=8.7
Q ss_pred HHHHHCCCEEEEECCCCC
Q ss_conf 123433981454036776
Q gi|254780779|r 175 QEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 175 ~EA~kl~IPvIaivDTn~ 192 (278)
..-..+.+|+|+++-.+|
T Consensus 128 ~~~~~~~vP~isvi~g~~ 145 (261)
T 2f9y_A 128 REMSRLGVPVVCTVIGEG 145 (261)
T ss_dssp HHHHTCSSCEEEEEEEEE
T ss_pred HHHHHCCCCEEEEEEECC
T ss_conf 999838987899997000
No 176
>>1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} (A:272-522)
Probab=36.25 E-value=14 Score=17.81 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=22.0
Q ss_pred HCCCCCEEEEECCCCC------------CHHHHHHHHCCCEEEEECCCCC
Q ss_conf 1135957999438877------------1232123433981454036776
Q gi|254780779|r 155 MGGLPDLMFVVDTNRE------------KLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 155 m~~lP~~iiv~d~~~e------------~~Av~EA~kl~IPvIaivDTn~ 192 (278)
..+.|=.++..|+... .-+++-|.+.+||+|.++||-.
T Consensus 51 i~G~~V~via~~~~~~gG~~~~~~~~K~~r~i~~a~~~~~Piv~l~dt~G 100 (251)
T 1x0u_A 51 IAGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDAFNIPLISLVDTPG 100 (251)
T ss_dssp ETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred ECCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 86804689850011368865731589999999712101753899960477
No 177
>>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A (A:57-291)
Probab=35.91 E-value=17 Score=17.38 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=6.9
Q ss_pred HHHHHHCCCEEEEECCC
Q ss_conf 21234339814540367
Q gi|254780779|r 174 IQEARRLRIPIVAVVDT 190 (278)
Q Consensus 174 v~EA~kl~IPvIaivDT 190 (278)
++-|.+.++|+|.++||
T Consensus 80 ~~lA~~~~lPlv~l~ds 96 (235)
T 2bzr_A 80 QELAIKTGRPLIGINDG 96 (235)
T ss_dssp HHHHHHHTCCEEEEECC
T ss_pred HHHHHHCCCCEEEEEEC
T ss_conf 99999728978999705
No 178
>>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} (A:65-327)
Probab=35.55 E-value=15 Score=17.69 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=11.8
Q ss_pred HHHHHHCCCEEEEECCCCC
Q ss_conf 2123433981454036776
Q gi|254780779|r 174 IQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 174 v~EA~kl~IPvIaivDTn~ 192 (278)
+......+||+|+++--+|
T Consensus 127 ~~~~~~~~vP~i~vi~g~~ 145 (263)
T 2f9i_A 127 LIEMASLKVPVIAIVIGEG 145 (263)
T ss_dssp HHHHHTCSSCEEEEEEEEE
T ss_pred HHHHHCCCCCEEEEEECCC
T ss_conf 9998728754899984661
No 179
>>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} (A:)
Probab=34.92 E-value=32 Score=15.51 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC--E---------ECCCCC--CCCCCCCHHHHHHHH
Q ss_conf 9999998610788169960782357999999863398--3---------142334--587323426665556
Q gi|254780779|r 55 ALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQ--Y---------CVNSKW--LGGMMTNWKTVSQSI 113 (278)
Q Consensus 55 A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~--~---------yV~~RW--lGG~LTN~~ti~~si 113 (278)
++.-|...-++||+|.-|||- .-+.++..|...|. + |--.+| .-|+||||..=+.++
T Consensus 239 ta~~i~~ak~~G~RviAVGTT--~vRaLEsaa~~~g~l~~~~G~T~lfI~Pgy~fkvvD~LiTNFHlP~STl 308 (345)
T 1wdi_A 239 VAEAVNRAKAEGRRVVAVGTT--VVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPRSTL 308 (345)
T ss_dssp HHHHHHHHHHTTCCEEEESHH--HHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTTCHH
T ss_pred HHHHHHHHHHCCCCEEEEEHH--HHHHHHHHHHCCCCCCCCCCEECEEECCCCCCCCCCEEEECCCCCCCHH
T ss_conf 999999999739948998468--9999999997289866778302459649997748187455684780299
No 180
>>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} (A:122-251)
Probab=34.54 E-value=33 Score=15.47 Aligned_cols=93 Identities=6% Similarity=-0.058 Sum_probs=50.7
Q ss_pred HHHHHHHHCCC-CEEEEEECCHHH---HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999861078-816996078235---79999998633983142334587323426665556778998876301212677
Q gi|254780779|r 56 LQVISDTVARG-GRILFVATKSQA---SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFT 131 (278)
Q Consensus 56 ~~~i~~i~~~g-g~ILFVgTk~~~---~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~t 131 (278)
....+.+..+| .+|.|||..... .+-...+-..+....+...++-.....+.......
T Consensus 6 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~r~~gf~~al~~~~~~~~~~~~~~~~~~~~~~~~------------------ 67 (130)
T 2iks_A 6 EXLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLF------------------ 67 (130)
T ss_dssp HHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEEEESSSCHHHHHHHH------------------
T ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH------------------
T ss_conf 23310122202333222345555443100125555555522343221223321367777888------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEE
Q ss_conf 46788766556777643443322113595799943887712321234339814
Q gi|254780779|r 132 KKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPI 184 (278)
Q Consensus 132 kKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPv 184 (278)
. -+......|+++|+.+...-..+++.+..+|+.|
T Consensus 68 -----------~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v 102 (130)
T 2iks_A 68 -----------E-------KWLETHPXPQALFTTSFALLQGVXDVTLRRDGKL 102 (130)
T ss_dssp -----------H-------HHTTTSCCCSEEEESSHHHHHHHHHHHHHHHSSC
T ss_pred -----------H-------HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -----------7-------7776326850443101577766666654100257
No 181
>>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni} (A:)
Probab=34.53 E-value=33 Score=15.47 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=36.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHH
Q ss_conf 35957999438877123212343398145403677670011520321577268999
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIA 212 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~ 212 (278)
.-.|+|++++...-...........-.+.-+.+...+|...|-+=|-=-+..+.+.
T Consensus 80 ~~~DlIi~m~~~~~~~l~~~~p~~~~~v~~l~~~~~~~~~~di~DP~~~~~f~~~~ 135 (156)
T 2gi4_A 80 DESDFLITMDNSNFKNVLKNFTNTQNKVLKITDFSPSLNYDEVPDPWYSGNFDETY 135 (156)
T ss_dssp TTCSEEECCCHHHHHHHHHHSCGGGGGEECTTTTCSSCCCCSSCHHHHTSCSHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 86020032237777877533024201176310206545899488999988799999
No 182
>>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} (A:1-127)
Probab=34.46 E-value=26 Score=16.12 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCC---CHHHHHHHHC-CCEEEEECCC
Q ss_conf 5957999438877---1232123433-9814540367
Q gi|254780779|r 158 LPDLMFVVDTNRE---KLAIQEARRL-RIPIVAVVDT 190 (278)
Q Consensus 158 lP~~iiv~d~~~e---~~Av~EA~kl-~IPvIaivDT 190 (278)
-||.++++.|+-- -.+-||..+- |||+|-|-|.
T Consensus 64 ~pDf~I~isPN~aaPGP~~ARE~l~~~giP~IvI~D~ 100 (127)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREXLADSEYPAVIIGDA 100 (127)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEG
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 8998999789989999577999987479987997588
No 183
>>3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} (A:26-148,A:211-349)
Probab=34.18 E-value=20 Score=16.81 Aligned_cols=42 Identities=19% Similarity=0.066 Sum_probs=27.2
Q ss_pred HHHHHCCCCCEEEEECCCCC------------CHHHHHHHHCCCEEEEECCCCC
Q ss_conf 33221135957999438877------------1232123433981454036776
Q gi|254780779|r 151 GIRDMGGLPDLMFVVDTNRE------------KLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 151 Gi~~m~~lP~~iiv~d~~~e------------~~Av~EA~kl~IPvIaivDTn~ 192 (278)
|.-.+.+.|=.++..|+..- .-+++.|.+.+||+|.++||-.
T Consensus 63 g~~ri~G~~v~vva~~~~~~gGs~~~~~~~K~~r~~~~a~~~~~Pli~~~~s~G 116 (262)
T 3ff6_A 63 TQEYPEGRDVIVIGNDITFRIGSFGPGEDLLYLRASEMARAEGIPKIYVAANSG 116 (262)
T ss_dssp CSSCTTCEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred CCCCCCCCEEEEEEECCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 887879828999987366305578789999999999999983998899964788
No 184
>>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=33.95 E-value=29 Score=15.81 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHCCCEEEE
Q ss_conf 8771232123433981454
Q gi|254780779|r 168 NREKLAIQEARRLRIPIVA 186 (278)
Q Consensus 168 ~~e~~Av~EA~kl~IPvIa 186 (278)
......++.|.+.+||||.
T Consensus 58 ~~~~~k~~~a~~~~i~iV~ 76 (113)
T 2cok_A 58 EKMNKKMEEVKEANIRVVS 76 (113)
T ss_dssp HHCCHHHHHHHHTTCCEEC
T ss_pred CCCCHHHHHHHHCCCCEEC
T ss_conf 3566499999987994961
No 185
>>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} (A:1-204)
Probab=33.86 E-value=34 Score=15.40 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=53.0
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 07881699607823579999998633983142334587323426665556778998876301212677467887665567
Q gi|254780779|r 64 ARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRD 143 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~ 143 (278)
..+.+|++|-..-.....+.....+.|...+..+|--....-
T Consensus 5 ~~~~~v~iiD~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~~-------------------------------------- 46 (204)
T 1gpm_A 5 IHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQI-------------------------------------- 46 (204)
T ss_dssp TTSSEEEEEECSCTTHHHHHHHHHHTTCEEEEEESCCCHHHH--------------------------------------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHH--------------------------------------
T ss_conf 666908999899759999999998759738998699999999--------------------------------------
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEC------CCCCCHHHHHHHHCCCEEEEEC
Q ss_conf 77643443322113595799943------8877123212343398145403
Q gi|254780779|r 144 KLKRALDGIRDMGGLPDLMFVVD------TNREKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 144 kl~k~lgGi~~m~~lP~~iiv~d------~~~e~~Av~EA~kl~IPvIaiv 188 (278)
....|+.+++.. ...+...++++...++|+.|||
T Consensus 47 -----------~~~~~~gvvl~gg~~~~~~~~~~~~i~~~~~~~~PiLGIC 86 (204)
T 1gpm_A 47 -----------RDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVC 86 (204)
T ss_dssp -----------HHHCCSEEEECCCSSCTTSTTCCCCCGGGGTSSSCEEEET
T ss_pred -----------HHCCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEEEC
T ss_conf -----------7249999998999998000799401599881899999980
No 186
>>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} (B:)
Probab=33.55 E-value=34 Score=15.37 Aligned_cols=78 Identities=9% Similarity=0.005 Sum_probs=48.2
Q ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 81699607823579999998633983142334587323426665556778998876301212677467887665567776
Q gi|254780779|r 67 GRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLK 146 (278)
Q Consensus 67 g~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~ 146 (278)
.+||+|....+....+.+..+++|....-.|+.-....-.. .
T Consensus 1 ~riliid~~~~~~~~i~~~l~~~g~~~~v~~~~~~~~~~~~----------~---------------------------- 42 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLID----------R---------------------------- 42 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHH----------H----------------------------
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHH----------H----------------------------
T ss_conf 94999948880799999999868796999979986531099----------9----------------------------
Q ss_pred HHHHHHHHHCCCCCEEEEECC------CCCCHHHHHHHHCCCEEEEECC
Q ss_conf 434433221135957999438------8771232123433981454036
Q gi|254780779|r 147 RALDGIRDMGGLPDLMFVVDT------NREKLAIQEARRLRIPIVAVVD 189 (278)
Q Consensus 147 k~lgGi~~m~~lP~~iiv~d~------~~e~~Av~EA~kl~IPvIaivD 189 (278)
. ..-.++.+++..- ..+...++++...++||+|||-
T Consensus 43 -~------~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~PvlGIC~ 84 (192)
T 1i1q_B 43 -L------ATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICL 84 (192)
T ss_dssp -H------TTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEETH
T ss_pred -H------HHHCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEHH
T ss_conf -9------86099979889999881325561999999856999873157
No 187
>>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii OT3} (A:1-12,A:96-241)
Probab=33.03 E-value=35 Score=15.31 Aligned_cols=121 Identities=16% Similarity=0.114 Sum_probs=63.6
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 16753899999999999999986107881699607823579999998633983142334587323426665556778998
Q gi|254780779|r 40 THIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119 (278)
Q Consensus 40 ihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l 119 (278)
+-.+||+-|+.....++..++ +.|-.+-++..... ..+.......|..-....|+++--+.
T Consensus 4 ~~~~~~~~~~Pg~~e~L~~L~---~~g~~i~i~Sn~~~--~~~~~~l~~~gl~~~fd~i~~~~~~~-------------- 64 (158)
T 2hoq_A 4 VIFFDLDDTVPGARKVLIRLK---ELGYELGIITDGNP--VKQWEKILRLELDDFFEHVIISDFEG-------------- 64 (158)
T ss_dssp EEEECSBTTCTTHHHHHHHHH---HHTCEEEEEECSCH--HHHHHHHHHTTCGGGCSEEEEGGGGT--------------
T ss_pred EEEEECCCCCCCHHHHHHHHH---HCCCEEEEEECCCH--HHHHHHHHHHCCCCCCCCCCCCCCCC--------------
T ss_conf 999968998857899998766---31440454215888--99998875330122222111210123--------------
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCC
Q ss_conf 8763012126774678876655677764344332211359579994-388771232123433981454036776700115
Q gi|254780779|r 120 EELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVV-DTNREKLAIQEARRLRIPIVAVVDTNSNPDLVD 198 (278)
Q Consensus 120 ~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~-d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~id 198 (278)
+.|.....+..- ++.+.--|+-++++ |.... -|..|++.|+.+|++......+...+
T Consensus 65 ----------~~KP~~~~~~~~----------~~~~~~~~~~~l~VgD~~~~--Di~~a~~aG~~ti~v~~~~~~~~~~~ 122 (158)
T 2hoq_A 65 ----------VKKPHPKIFKKA----------LKAFNVKPEEALMVGDRLYS--DIYGAKRVGMKTVWFRYGKHSERELE 122 (158)
T ss_dssp ----------CCTTCHHHHHHH----------HHHHTCCGGGEEEEESCTTT--THHHHHHTTCEEEEECCSCCCHHHHT
T ss_pred ----------CCCCCCHHHHHH----------HHHCCCHHHHHEEECCCCHH--HHHHHHHCCCEEEEECCCCCCHHHHC
T ss_conf ----------233310011234----------55200103343032258376--69999987997999827999744410
Q ss_pred CEE
Q ss_conf 203
Q gi|254780779|r 199 YVI 201 (278)
Q Consensus 199 ypI 201 (278)
..-
T Consensus 123 ~~~ 125 (158)
T 2hoq_A 123 YRK 125 (158)
T ss_dssp TGG
T ss_pred CCC
T ss_conf 256
No 188
>>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp} (A:204-366)
Probab=32.58 E-value=35 Score=15.27 Aligned_cols=65 Identities=14% Similarity=0.023 Sum_probs=46.3
Q ss_pred HHHHHCCCCCEEEEECCCC---CCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHH
Q ss_conf 3322113595799943887---7123212343398145403677670011520321577268999999
Q gi|254780779|r 151 GIRDMGGLPDLMFVVDTNR---EKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFC 215 (278)
Q Consensus 151 Gi~~m~~lP~~iiv~d~~~---e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~ 215 (278)
|-..|..--..+|++.+.. +....++....+-+++.|.+...+.+...+.+|..++....+.+++
T Consensus 61 GP~~~~~~~~~vi~l~~~~~~~~~~l~~~~~~~~~~~~vI~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 128 (163)
T 3knz_A 61 GIYNAFNAQSALIXLDPQPDARQDRLAQILGEWTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYII 128 (163)
T ss_dssp THHHHCCTTEEEEEECSSCCHHHHHHHHHHHHHCSCEEEEESSSCCSSSSEECCCCCCTTTTHHHHHH
T ss_pred CCCHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 66222168862999947837999999999996579789993433577865981798715776999999
No 189
>>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* (A:63-307)
Probab=31.86 E-value=21 Score=16.70 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=13.8
Q ss_pred HHHHHHHCCCEEEEECCCCC
Q ss_conf 32123433981454036776
Q gi|254780779|r 173 AIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 173 Av~EA~kl~IPvIaivDTn~ 192 (278)
++.+....++|+|+++--.|
T Consensus 112 a~~~~~~~~vP~i~vi~~~~ 131 (245)
T 3gf3_A 112 RNSELNQLGIPVIVGIYGTN 131 (245)
T ss_dssp HHHHHHHTTCCEEEEECSEE
T ss_pred HHHHHHCCCCCEEEEECCCC
T ss_conf 99998458997799954676
No 190
>>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis} (A:28-246)
Probab=31.73 E-value=36 Score=15.18 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=30.6
Q ss_pred HHHCCCCCEEEEEC-----CCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 22113595799943-----887712321234339814540367
Q gi|254780779|r 153 RDMGGLPDLMFVVD-----TNREKLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 153 ~~m~~lP~~iiv~d-----~~~e~~Av~EA~kl~IPvIaivDT 190 (278)
+.+...||+++|=. |..--+|-.=.-.+++|+||+.-|
T Consensus 77 ~~l~~~PdlilvDG~G~~HPR~~GlA~HlGv~l~~PtIGVAKs 119 (219)
T 3ga2_A 77 KKLETEPDVFLFDGNGYLHYNHXGVATHAAFFLGKPTIGIAKT 119 (219)
T ss_dssp HHCSSCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEESS
T ss_pred HHCCCCCCEEEECCCCEECCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 8568999999981861016877645442010139887755234
No 191
>>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} (A:153-240)
Probab=31.66 E-value=8.6 Score=19.23 Aligned_cols=62 Identities=23% Similarity=0.226 Sum_probs=34.6
Q ss_pred CHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCEEEECHH----HHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 58999860886075477-65788562102001881675389----999999999999998610788169960
Q gi|254780779|r 7 TIRQLLESGVQFGHRNF-LWNPKMERYIFCERNNTHIIDLS----QTVPMLQKALQVISDTVARGGRILFVA 73 (278)
Q Consensus 7 t~~~Ll~ag~H~Gh~~~-~wnPkM~~yI~g~rngihIIdL~----kT~~~L~~A~~~i~~i~~~gg~ILFVg 73 (278)
+++.|-+.|....-+.+ +-+-++.||| +-||.+|+|+. .....+..+++-+.-++..| ||++
T Consensus 21 v~~~l~~~g~~~~lR~r~~~~~k~gp~i--TDnGN~I~D~~f~~i~dp~~l~~~L~~i~GVVe~G---lF~n 87 (88)
T 1xtz_A 21 VKNDLLEQLHAEKVDIRQGGSAKAGPVV--TDNNNFIIDADFGEISDPRKLHREIKLLVGVVETG---LFID 87 (88)
T ss_dssp HHHHHHHTSCCSEEEECEETTTEEEECC--CTTSCEEEEEECSSBSCHHHHHHHHHTSTTEEEES---EECS
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCEE--CCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEC---CCCC
T ss_conf 9999998607986057415766678507--15997699826898789999999870799899568---2168
No 192
>>1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} (A:40-271)
Probab=31.53 E-value=22 Score=16.64 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=12.4
Q ss_pred HHHHHHHHCCCEEEEECCCCC
Q ss_conf 232123433981454036776
Q gi|254780779|r 172 LAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 172 ~Av~EA~kl~IPvIaivDTn~ 192 (278)
.+..+....+||+|+++...|
T Consensus 115 ~~~~~~~~~~vP~i~vv~g~~ 135 (232)
T 1x0u_A 115 FKMNVMASGVIPQITIMAGPA 135 (232)
T ss_dssp HHHHHHHTTTSCEEEEECSEE
T ss_pred HHHHHHHCCCCEEEEECCCCC
T ss_conf 777888707965999815787
No 193
>>1xny_A Pccase, propionyl-COA carboxylase complex B subunit, PCC; polyketide, polyketide synthase, acyl-COA carboxylase, carboxyltransferase; HET: 191 BTN; 2.20A {Streptomyces coelicolor} (A:46-278)
Probab=31.40 E-value=22 Score=16.62 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=12.3
Q ss_pred HHHHHHHCCCEEEEECCCCC
Q ss_conf 32123433981454036776
Q gi|254780779|r 173 AIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 173 Av~EA~kl~IPvIaivDTn~ 192 (278)
+.......++|+|+++-..|
T Consensus 116 ~~~~~~~~~vP~i~vi~g~~ 135 (233)
T 1xny_A 116 RRNTHASGVIPQISLVVGPC 135 (233)
T ss_dssp HHHHHTTTTSCEEEEECSEE
T ss_pred HHHHHHCCCCCEEEEEECCC
T ss_conf 99998707873889860355
No 194
>>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* (A:166-326)
Probab=31.34 E-value=37 Score=15.13 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=25.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 1359579994388771232123433981454036776
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~ 192 (278)
-..=|++|-.|+. ++..|.-+|+|+|+|-.++.
T Consensus 86 i~~~d~~I~~Dtg----~~HlA~a~g~P~i~l~~~~~ 118 (161)
T 2gt1_A 86 LAGAKFVVSVDTG----LSHLTAALDRPNITVYGPTD 118 (161)
T ss_dssp HHTCSEEEEESSH----HHHHHHHTTCCEEEEESSSC
T ss_pred HHHCCEEEECCCH----HHHHHHHCCCCEEEEECCCC
T ss_conf 9609889807976----99999985999899988899
No 195
>>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3} (A:194-344)
Probab=31.09 E-value=37 Score=15.11 Aligned_cols=59 Identities=5% Similarity=-0.037 Sum_probs=44.8
Q ss_pred CCEEEEECCCCCCH-----HHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHH
Q ss_conf 95799943887712-----321234339814540367767001152032157726899999999
Q gi|254780779|r 159 PDLMFVVDTNREKL-----AIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDL 217 (278)
Q Consensus 159 P~~iiv~d~~~e~~-----Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~ 217 (278)
-..+|++++..+.. .+++++..+-+++.|.+...+.+.+.++.+.++.....+.++.-.
T Consensus 61 ~~~vi~l~~~~~~~~~~~~~~~~~~~~~~~v~~I~~~~~~~~~~~~~~~~~~~l~p~~~~ip~q 124 (151)
T 3fj1_A 61 GFPVLGFAAGDAAEAPLAEIADQIAAKGATVFATTGRVTRARVLEHVRSGHALTDPLSLIVSFY 124 (151)
T ss_dssp TCCEEECCCSSTTHHHHHHHHHHHHHTTCCEEESSTTCSSSEECCCCCCSSTTTHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9858999779717678989999999859989998088542223544788316767999999999
No 196
>>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein structure initiative; 2.10A {Bordetella pertussis} (A:1-15,A:92-232)
Probab=31.03 E-value=37 Score=15.10 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=43.3
Q ss_pred CCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 8816753899999999999999986107881699607823579999998633983
Q gi|254780779|r 38 NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQY 92 (278)
Q Consensus 38 ngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~ 92 (278)
....++||+.|+.....+..+++.+.+.|-++.+|.-.. ...++..|..+|..
T Consensus 4 ~~~~~~~~~~~~~l~p~~~e~i~~lk~~Gi~v~ivTg~~--~~~a~~ia~~lGi~ 56 (156)
T 3fvv_A 4 RRLALFDLDHTLSLTVQAVDVVRGHLAAGDLCALVTATN--SFVTAPIARAFGVQ 56 (156)
T ss_dssp CEEEEECCBTTTGCCHHHHHHHHHHHHTTCEEEEEESSC--HHHHHHHHHHTTCC
T ss_pred CEEEEEECCCCCHCCHHHHHHHHHHHHCCCEEEEECCCC--HHHHHHHHHHCCCC
T ss_conf 879999477882138769999999997593699967998--99999999981980
No 197
>>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} (A:1-217)
Probab=30.82 E-value=38 Score=15.08 Aligned_cols=77 Identities=4% Similarity=-0.048 Sum_probs=52.1
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 10788169960782357999999863398314233458732342666555677899887630121267746788766556
Q gi|254780779|r 63 VARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKR 142 (278)
Q Consensus 63 ~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~ 142 (278)
....++||++.........+.+...+.|......++--+...-
T Consensus 26 ~~~~~~i~iiD~~~~~~~~l~~~l~~~g~~~~v~~~~~~~~~~------------------------------------- 68 (217)
T 2vxo_A 26 HHYEGAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAI------------------------------------- 68 (217)
T ss_dssp ---CCCEEEEEEC--CHHHHHHHHHHTTCCEEEEETTCCHHHH-------------------------------------
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHH-------------------------------------
T ss_conf 1578988999898479999999998639838998599999999-------------------------------------
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECC------CCCCHHHHHHHHCCCEEEEEC
Q ss_conf 7776434433221135957999438------877123212343398145403
Q gi|254780779|r 143 DKLKRALDGIRDMGGLPDLMFVVDT------NREKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 143 ~kl~k~lgGi~~m~~lP~~iiv~d~------~~e~~Av~EA~kl~IPvIaiv 188 (278)
+ ...+|.+++..- ..+...++++...++|++|||
T Consensus 69 ~------------~~~~dgiiisgg~~~~~d~~~~~~i~~~~~~~~PilGIC 108 (217)
T 2vxo_A 69 K------------EQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGIC 108 (217)
T ss_dssp H------------HHTCSEEEEEECC-------CCCCCGGGTTSSCCEEEEE
T ss_pred H------------HCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEEC
T ss_conf 7------------269999998899998777899876999982899889977
No 198
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:1-121,A:255-277)
Probab=30.82 E-value=38 Score=15.08 Aligned_cols=33 Identities=9% Similarity=-0.132 Sum_probs=26.2
Q ss_pred CCCCEEEEECCCCCC-HHHHHHHHCCCEEEEECC
Q ss_conf 359579994388771-232123433981454036
Q gi|254780779|r 157 GLPDLMFVVDTNREK-LAIQEARRLRIPIVAVVD 189 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~-~Av~EA~kl~IPvIaivD 189 (278)
+.+|.++++.+..+. -++..+.+.+||++.+-.
T Consensus 76 ~~vDGiIi~~~~~~~~~~~~~l~~~~iPvV~i~~ 109 (144)
T 3brq_A 76 LRCDAIXIYPRFLSVDEIDDIIDAHSQPIXVLNR 109 (144)
T ss_dssp TTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 4653024403332117889998751798522222
No 199
>>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin ligase, antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A (A:1-103,A:194-210)
Probab=30.81 E-value=38 Score=15.08 Aligned_cols=48 Identities=13% Similarity=0.015 Sum_probs=29.0
Q ss_pred CCCEEEEECCC-CCCHHHHHHHHCCCEEEEE------CCCCCCCHHCCCEEEECC
Q ss_conf 59579994388-7712321234339814540------367767001152032157
Q gi|254780779|r 158 LPDLMFVVDTN-REKLAIQEARRLRIPIVAV------VDTNSNPDLVDYVIPGND 205 (278)
Q Consensus 158 lP~~iiv~d~~-~e~~Av~EA~kl~IPvIai------vDTn~dp~~idypIP~ND 205 (278)
--..||+-+.. ....-+..|...|||||.. +..+.=.+.=+|.+..++
T Consensus 36 ~tThlI~~~~~~~~t~K~~~A~~~~i~IV~~~Wl~~ci~~~k~l~~~~y~~~~~~ 90 (120)
T 2nte_A 36 TVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQEEKYEIPEGP 90 (120)
T ss_dssp TCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSCCCGGGTBCTTHH
T ss_pred CCCEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCH
T ss_conf 9878997177520059999998628860436899999981885888880045303
No 200
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:1-163,A:297-318)
Probab=30.75 E-value=38 Score=15.07 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=29.0
Q ss_pred CCCCEEEEECCCCCCHHHHH-HHHCCCEEEEECCCCCCCHHCCCEE
Q ss_conf 35957999438877123212-3433981454036776700115203
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQE-ARRLRIPIVAVVDTNSNPDLVDYVI 201 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~E-A~kl~IPvIaivDTn~dp~~idypI 201 (278)
+-+|.++++.+..+...+.+ +.+.+||+|.+ |.+.+-..++...
T Consensus 118 ~~vdGiIi~~~~~~~~~~~~~l~~~~iPvV~i-d~~~~~~~~~sV~ 162 (185)
T 3dbi_A 118 LRCDAIXIYPRFLSVDEIDDIIDAHSQPIXVL-NRRLRKNSSHSVW 162 (185)
T ss_dssp TTCSEEEECCSSSCHHHHHHHHHHCSSCEEEE-SSCCSSSGGGEEC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEE-CCCCCCCCCCEEE
T ss_conf 59887997588777588999998549978993-6766677785253
No 201
>>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A (A:292-548)
Probab=30.71 E-value=20 Score=16.87 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=4.3
Q ss_pred CCCCCCCCCC
Q ss_conf 3345873234
Q gi|254780779|r 96 SKWLGGMMTN 105 (278)
Q Consensus 96 ~RWlGG~LTN 105 (278)
..|.||+++=
T Consensus 65 ~~~~gGs~~~ 74 (257)
T 2bzr_A 65 PTHFAGCLDI 74 (257)
T ss_dssp TTSGGGCBCH
T ss_pred CCCCCCCCCH
T ss_conf 4123688886
No 202
>>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} (A:44-272)
Probab=30.66 E-value=18 Score=17.14 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=7.6
Q ss_pred HHHHHHHCCCEEEEECCC
Q ss_conf 321234339814540367
Q gi|254780779|r 173 AIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 173 Av~EA~kl~IPvIaivDT 190 (278)
+++-|.+.++|+|.++||
T Consensus 79 ~~~~A~~~~~Piv~l~ds 96 (229)
T 1on3_A 79 TMEQALLTGTPFLFFYDS 96 (229)
T ss_dssp HHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHCCCCEEEEEEC
T ss_conf 999998559988999826
No 203
>>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} (A:244-449)
Probab=30.58 E-value=38 Score=15.05 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=40.4
Q ss_pred CCEEEEECCCCCC----HHHHHHHHCC-CEEEEECCCCCCCH--HCCCEE--EECCC-------CHHHHHHHHHHHHHHH
Q ss_conf 9579994388771----2321234339-81454036776700--115203--21577-------2689999999999999
Q gi|254780779|r 159 PDLMFVVDTNREK----LAIQEARRLR-IPIVAVVDTNSNPD--LVDYVI--PGNDD-------SSRSIALFCDLVASAA 222 (278)
Q Consensus 159 P~~iiv~d~~~e~----~Av~EA~kl~-IPvIaivDTn~dp~--~idypI--P~NDd-------s~~si~l~~~~i~~ai 222 (278)
.|++|++....+. -+++.|+..| +|+|++.+.-.+|- ..|+.+ |..++ |.-+.-+++..|...+
T Consensus 97 ~dlvI~iS~sG~t~~~~~~~~~ak~~g~~~vi~iT~~~~s~l~~~~d~~l~~~~~~~~~~~~~~s~~~~~~~~~~l~~~l 176 (206)
T 2bpl_A 97 NSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKL 176 (206)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 85899973788738899999988753875599997469977877416206772377511046413588999999999987
Q ss_pred HHH
Q ss_conf 999
Q gi|254780779|r 223 IDG 225 (278)
Q Consensus 223 ~~g 225 (278)
.+-
T Consensus 177 ~~~ 179 (206)
T 2bpl_A 177 SKL 179 (206)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 664
No 204
>>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae TIGR4} (A:1-16,A:83-190)
Probab=30.44 E-value=38 Score=15.04 Aligned_cols=35 Identities=6% Similarity=0.010 Sum_probs=25.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf 95799943887712321234339814540367767001
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDL 196 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~ 196 (278)
.+++||=|... -+..|++.|+++|++.+-+..+..
T Consensus 87 ~~~l~VgD~~~---Di~aA~~aGi~~i~v~~g~~~~~~ 121 (124)
T 2fi1_A 87 SSGLVIGDRPI---DIEAGQAAGLDTHLFTSIVNLRQV 121 (124)
T ss_dssp SSEEEEESSHH---HHHHHHHTTCEEEECSCHHHHHHH
T ss_pred CCEEEECCCHH---HHHHHHHCCCEEEEECCCCCHHHH
T ss_conf 97699907999---999999859979999998873753
No 205
>>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, alternative splicing, hydrolase, metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A (A:27-187)
Probab=30.41 E-value=38 Score=15.04 Aligned_cols=100 Identities=11% Similarity=0.004 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 99999999861078816996078235799999986339831423345873234266655567789988763012126774
Q gi|254780779|r 53 QKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTK 132 (278)
Q Consensus 53 ~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tk 132 (278)
.-+..++..+..+|.++-.+.+.. ............+..+......|+.--+-..
T Consensus 45 pg~~e~l~~L~~~g~~i~i~T~~~-~~~~~~~~l~~~~~~~~~~~~~~~~kp~~~~------------------------ 99 (161)
T 2wm8_A 45 PEVPEVLKRLQSLGVPGAAASRTS-EIEGANQLLELFDLFRYFVHREIYPGSKITH------------------------ 99 (161)
T ss_dssp TTHHHHHHHHHHHTCCEEEEECCS-CHHHHHHHHHHTTCTTTEEEEEESSSCHHHH------------------------
T ss_pred HHHHHHHHHHHHCCCEEEEECCCC-HHHHHHHHHHHCCCCEEEEEEECCCCCCHHH------------------------
T ss_conf 559999999998897799506785-4899999997357642677775167656489------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 678876655677764344332211359579994-388771232123433981454036776700
Q gi|254780779|r 133 KERLNIERKRDKLKRALDGIRDMGGLPDLMFVV-DTNREKLAIQEARRLRIPIVAVVDTNSNPD 195 (278)
Q Consensus 133 Ke~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~-d~~~e~~Av~EA~kl~IPvIaivDTn~dp~ 195 (278)
+.+- ++.+.--|+-++++ |... -+.-|+++|+++|++.+....+.
T Consensus 100 -----~~~~----------l~~~~~~~~~~v~vgD~~~---di~~A~~~G~~~i~v~~~~~~~~ 145 (161)
T 2wm8_A 100 -----FERL----------QQKTGIPFSQMIFFDDERR---NIVDVSKLGVTCIHIQNGMNLQT 145 (161)
T ss_dssp -----HHHH----------HHHHCCCGGGEEEEESCHH---HHHHHHTTTCEEEECSSSCCHHH
T ss_pred -----HHHH----------HHHCCCCCCEEEEEECCHH---HHHHHHHCCCEEEEECCCCCHHH
T ss_conf -----9999----------9982999763999938787---69999986998999689998899
No 206
>>2qyf_B MAD2L1-binding protein; MAD2 family, spindle assembly checkpoint, cell cycle, cell division, mitosis, nucleus, phosphorylation; 2.30A {Homo sapiens} (B:)
Probab=30.36 E-value=19 Score=17.01 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCC
Q ss_conf 67887665567776434433221----------135957999438877123212343398145403677
Q gi|254780779|r 133 KERLNIERKRDKLKRALDGIRDM----------GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTN 191 (278)
Q Consensus 133 Ke~~~~~r~~~kl~k~lgGi~~m----------~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn 191 (278)
+......++..|.++.+..|.+| ...|.++|+++.+-=. =+|+..++||-....+..
T Consensus 78 ~~~~~~~~~~kk~~~~l~~ie~l~~~L~~~f~~s~v~~v~iLfGst~~s--PkE~Y~i~i~~~~~~~~~ 144 (240)
T 2qyf_B 78 KPRATTEVSSRKCQQALAELESVLSHLEDFFARTLVPRVLILLGGNALS--PKEFYELDLSLLAPYSVD 144 (240)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHSCCCEEEEEESSCSSS--CSEEEEEECTTSCC---C
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC--CCEEEEEECCCCCCCCCC
T ss_conf 2001437789999999999999999999999738776599996687677--502489863455666554
No 207
>>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA; 1.35A {Pyrococcus horikoshii OT3} PDB: 2dec_A* 2df8_A 2cb0_A* (A:12-157)
Probab=30.23 E-value=39 Score=15.02 Aligned_cols=112 Identities=16% Similarity=0.136 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH--HHHHHHHHHHCCCEECC--CC-CCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999861078816996078235--79999998633983142--33-458732342666555677899887
Q gi|254780779|r 47 QTVPMLQKALQVISDTVARGGRILFVATKSQA--SDCVMEAAKRSAQYCVN--SK-WLGGMMTNWKTVSQSIQKLRDLEE 121 (278)
Q Consensus 47 kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~--~~~i~~~A~~~~~~yV~--~R-WlGG~LTN~~ti~~si~~l~~l~~ 121 (278)
.|...+.+...-+.+...+.++|.|+|..... .......-.+.|...+. .- .......+
T Consensus 1 et~~~i~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~---------------- 64 (146)
T 2e5f_A 1 DGIIKADKVFNKVKDKISLPNRILYLGCGSSHFLSKLLAMVTNMHGGLGIALPCSEFLYSKETY---------------- 64 (146)
T ss_dssp HHHHHHHHHHHHHTTTCCCCSEEEEEESTHHHHHHHHHHHHHHHTTSEEEEEEHHHHHHHGGGS----------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCC----------------
T ss_conf 9999999999999998567996999988369999999999999963999899678877327667----------------
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCC--HHCCC
Q ss_conf 6301212677467887665567776434433221135957999438877123212343398145403677670--01152
Q gi|254780779|r 122 LLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNP--DLVDY 199 (278)
Q Consensus 122 ~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp--~~idy 199 (278)
. -.--|++|++....+..-+.++.+..=-.+++++...+| ...|+
T Consensus 65 -------~--------------------------~~~~dvvi~iS~sG~t~~~~~~~~~a~~~i~it~~~~s~l~~~ad~ 111 (146)
T 2e5f_A 65 -------P--------------------------IGEVELAVGISRSGETTEILLALEKINVKKLGITTRESSLTRMCDY 111 (146)
T ss_dssp -------C--------------------------CCSCSEEEEECSSSCCHHHHHHHHTCCSCEEEEESSSCHHHHHSSE
T ss_pred -------C--------------------------CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCC
T ss_conf -------6--------------------------8998289997789982679999998555311554303444412565
Q ss_pred EEEE--CCCC
Q ss_conf 0321--5772
Q gi|254780779|r 200 VIPG--NDDS 207 (278)
Q Consensus 200 pIP~--NDds 207 (278)
.++. ++.+
T Consensus 112 ~l~~~~~~~~ 121 (146)
T 2e5f_A 112 SLVVPAIEES 121 (146)
T ss_dssp EEECCCCCCS
T ss_pred CEEECCCCCC
T ss_conf 2000124322
No 208
>>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} (A:125-258,A:355-392)
Probab=30.08 E-value=39 Score=15.00 Aligned_cols=91 Identities=14% Similarity=0.218 Sum_probs=64.6
Q ss_pred CCCEEEEEECCH----HHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 788169960782----3579999998633983142334587323426665556778998876301212677467887665
Q gi|254780779|r 65 RGGRILFVATKS----QASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIER 140 (278)
Q Consensus 65 ~gg~ILFVgTk~----~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r 140 (278)
..++|.+|...- ...+.+++.+++.|.--+..-.++-.-++|...-.+++.
T Consensus 18 g~k~Vaii~~d~~~G~~~~~~f~~~l~~~G~evv~~~~~~~~~~d~s~~i~~ik~------------------------- 72 (172)
T 3lkb_A 18 KGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQ------------------------- 72 (172)
T ss_dssp TTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHH-------------------------
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHC-------------------------
T ss_conf 8977999933563038999999999987498799998148997235578887653-------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHCCCEEEEE-CCCCCCCHH
Q ss_conf 56777643443322113595799943887-712321234339814540-367767001
Q gi|254780779|r 141 KRDKLKRALDGIRDMGGLPDLMFVVDTNR-EKLAIQEARRLRIPIVAV-VDTNSNPDL 196 (278)
Q Consensus 141 ~~~kl~k~lgGi~~m~~lP~~iiv~d~~~-e~~Av~EA~kl~IPvIai-vDTn~dp~~ 196 (278)
.-||+||+..... -...+++|..+|+...=+ .|+..+++.
T Consensus 73 ----------------a~pdvVv~~~~~~~~~~ilk~a~~~G~~~~~i~~~~~~~~~~ 114 (172)
T 3lkb_A 73 ----------------AGVEYVVHQNVAGPVANILKDAKRLGLKMRHLGAHYTGGPDL 114 (172)
T ss_dssp ----------------TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEEECGGGCSHHH
T ss_pred ----------------CCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
T ss_conf ----------------699899993662679999999998399964999556788889
No 209
>>1xww_A Low molecular weight phosphotyrosine protein phosphatase; hydrolase; 1.63A {Homo sapiens} PDB: 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A 5pnt_A* (A:)
Probab=30.07 E-value=39 Score=15.00 Aligned_cols=134 Identities=12% Similarity=0.137 Sum_probs=60.9
Q ss_pred CCCCEEEEEECCHHHHHH-----HHHHHHHCC---CEECCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 078816996078235799-----999986339---831423345----87323426665556778998876301212677
Q gi|254780779|r 64 ARGGRILFVATKSQASDC-----VMEAAKRSA---QYCVNSKWL----GGMMTNWKTVSQSIQKLRDLEELLNKENQGFT 131 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~-----i~~~A~~~~---~~yV~~RWl----GG~LTN~~ti~~si~~l~~l~~~~~~~~~~~t 131 (278)
....+||||+|....+.. .+..+..-| ...|..--. +|-=.|-. .+..|.+..-..+..-..++
T Consensus 3 ~~~~~VLFVC~~N~cRS~mAEai~~~~~~~~~~~~~~~v~Sag~~~~~~~~~~~~~----a~~~l~~~gi~~~~~s~~l~ 78 (157)
T 1xww_A 3 QATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPR----AVSCLRNHGIHTAHKARQIT 78 (157)
T ss_dssp CCCEEEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSTTTTCCCCHH----HHHHHHHTTCCCCCCCCBCC
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHH----HHHHHHHCCCCCCCCHHHCC
T ss_conf 88886999949836489999999999898769986458970344332247757889----99999966742010010221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH--HCCCEEEEECCCCC--CCHHCCCEEEECCCC
Q ss_conf 46788766556777643443322113595799943887712321234--33981454036776--700115203215772
Q gi|254780779|r 132 KKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEAR--RLRIPIVAVVDTNS--NPDLVDYVIPGNDDS 207 (278)
Q Consensus 132 kKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~--kl~IPvIaivDTn~--dp~~idypIP~NDds 207 (278)
... -.-.|+|++++...-.......- ......+.....-+ ++..|.=|-.++.++
T Consensus 79 ~~~---------------------~~~~DlIi~m~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~I~DP~~~~~~~ 137 (157)
T 1xww_A 79 KED---------------------FATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSD 137 (157)
T ss_dssp HHH---------------------HHHCSEEEESSHHHHHHHHHHHHTCSCCCCEEEEGGGGCTTCCCCCCCCTTSCHHH
T ss_pred HHH---------------------HHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 987---------------------30311656526767999998668765532035541110777888568989999899
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 689999999999999
Q gi|254780779|r 208 SRSIALFCDLVASAA 222 (278)
Q Consensus 208 ~~si~l~~~~i~~ai 222 (278)
.+.+.--+......+
T Consensus 138 f~~~~~~i~~~i~~l 152 (157)
T 1xww_A 138 FETVYQQCVRCCRAF 152 (157)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 210
>>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} (A:131-210)
Probab=29.96 E-value=6.9 Score=19.86 Aligned_cols=58 Identities=28% Similarity=0.296 Sum_probs=32.6
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHH----HHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 58999860886075477657885621020018816753899----99999999999998610788169960
Q gi|254780779|r 7 TIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQ----TVPMLQKALQVISDTVARGGRILFVA 73 (278)
Q Consensus 7 t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~k----T~~~L~~A~~~i~~i~~~gg~ILFVg 73 (278)
+.+.|-+.|.+ .+..--+..||+ +.||.+|+|+.- ....+...++-+.-++..| ||+|
T Consensus 18 v~~~l~~lG~~----~~lR~~~~gp~v--TDnGN~IiD~~~~~i~d~~~l~~~L~~i~GVVe~G---lF~n 79 (80)
T 1uj6_A 18 TLKAIADLGGE----PELRXDGDEFYF--TDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETG---LFVG 79 (80)
T ss_dssp HHHHHHTTTCC----EEECEETTEECC--CTTSCEEEEECCCSCSCHHHHHHHHHTSTTEEEES---EECS
T ss_pred HHHHHHHHCCC----EEEECCCCCEEE--ECCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEC---CCCC
T ss_conf 99999972896----489417980289--47998899912899899999999986799998028---0058
No 211
>>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:111-242)
Probab=29.94 E-value=39 Score=14.98 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCC--E----EEEECCC
Q ss_conf 35957999438877123212343398--1----4540367
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRI--P----IVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~I--P----vIaivDT 190 (278)
..|+++|+.+-.--.-+++.++.+|| | ++|+-|+
T Consensus 77 ~~~~ai~~~~d~~a~~~~~~l~~~g~~ip~di~i~~fd~~ 116 (132)
T 3gv0_A 77 DRPDGIVSISGSSTIALVAGFEAAGVKIGEDVDIVSKQSA 116 (132)
T ss_dssp SCCSEEEESCHHHHHHHHHHHHTTTCCTTTSCEEEEEESS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf 5774001134788887788876333014542289996783
No 212
>>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} (A:)
Probab=29.91 E-value=39 Score=14.98 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=28.5
Q ss_pred CCEEEEECCCCCC---HHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 9579994388771---232123433981454036776700
Q gi|254780779|r 159 PDLMFVVDTNREK---LAIQEARRLRIPIVAVVDTNSNPD 195 (278)
Q Consensus 159 P~~iiv~d~~~e~---~Av~EA~kl~IPvIaivDTn~dp~ 195 (278)
.+-|+|.....+. ..+++|..+|..|+-+.|.-++.+
T Consensus 120 i~~iii~G~~T~~CV~~Ta~~a~~~g~~v~vv~Da~a~~~ 159 (180)
T 1im5_A 120 VKRVYICGVATEYCVRATALDALKHGFEVYLLRDAVKGIK 159 (180)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 4646998644655799999999977999999651107999
No 213
>>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} (A:102-231)
Probab=29.90 E-value=39 Score=14.98 Aligned_cols=98 Identities=6% Similarity=0.012 Sum_probs=58.1
Q ss_pred HHHHHHCC-CCEEEEEECCHHHH------HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99986107-88169960782357------999999863398314233458732342666555677899887630121267
Q gi|254780779|r 58 VISDTVAR-GGRILFVATKSQAS------DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGF 130 (278)
Q Consensus 58 ~i~~i~~~-gg~ILFVgTk~~~~------~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~ 130 (278)
.+..+..+ -.+|+||+...... .-........|.++.......+.-..+......
T Consensus 8 a~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 69 (130)
T 3cs3_A 8 AIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKI------------------ 69 (130)
T ss_dssp HHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCSSHHHHHHHHHHH------------------
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH------------------
T ss_conf 33210122234543345786662334322689999998499741341245267788877776------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEE---EEECCCCCCC
Q ss_conf 746788766556777643443322113595799943887712321234339814---5403677670
Q gi|254780779|r 131 TKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPI---VAVVDTNSNP 194 (278)
Q Consensus 131 tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPv---IaivDTn~dp 194 (278)
+..-...|+++|+.+-..-.-.++.+.++|+.+ |+++--|.+|
T Consensus 70 ---------------------~~~~~~~~~aii~~~d~~a~~~l~~l~~~g~~vP~di~vv~fdd~~ 115 (130)
T 3cs3_A 70 ---------------------LSQPQTEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFDNSE 115 (130)
T ss_dssp ---------------------TTSCCCSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSSCCH
T ss_pred ---------------------HHCCCCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCEECCCCCCHH
T ss_conf ---------------------4136898627875224540453002423344578412034568868
No 214
>>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* (A:1-113,A:194-220)
Probab=29.84 E-value=39 Score=14.98 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEE---E---CCCCCCCHHCCCE
Q ss_conf 126774678876655677764344332211359579994388771232123433981454---0---3677670011520
Q gi|254780779|r 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVA---V---VDTNSNPDLVDYV 200 (278)
Q Consensus 127 ~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIa---i---vDTn~dp~~idyp 200 (278)
+.++++.+ +.++-+.+||--.=.=-+...+|++......-+..|..+|||||. | +..+.-.+.-.|.
T Consensus 13 vsG~~k~e-------l~~~I~~~GG~v~~~~~~~ThlVv~~~~~~~K~~~A~~~~i~IV~~~Wl~dci~~~~~l~e~~Y~ 85 (140)
T 3l41_A 13 FTGYDKKP-------SIDNLKKLDMSITSNPSKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPYL 85 (140)
T ss_dssp ECSCSSCC-------CCGGGGGGTEEECSCTTTCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCCSGGGB
T ss_pred EECCCCHH-------HHHHHHHCCCEEECCCCCCEEEEECCCCCCHHHHHHHHCCCCEECHHHHHHHHHHHHCCCHHHCC
T ss_conf 95897707-------78999977989987776664999899899999999998399789989999999861238898856
Q ss_pred EEECC
Q ss_conf 32157
Q gi|254780779|r 201 IPGND 205 (278)
Q Consensus 201 IP~ND 205 (278)
++.+.
T Consensus 86 i~~~~ 90 (140)
T 3l41_A 86 LNDPE 90 (140)
T ss_dssp CCCHH
T ss_pred CCCCH
T ss_conf 77713
No 215
>>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A* (A:)
Probab=29.23 E-value=40 Score=14.91 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCE--ECCCCCCCCC
Q ss_conf 99999999986107881699607823579999998633983--1423345873
Q gi|254780779|r 52 LQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQY--CVNSKWLGGM 102 (278)
Q Consensus 52 L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~--yV~~RWlGG~ 102 (278)
-.+|..++...-...-.+.-|......+..+.+..-...-| ||+.+++||.
T Consensus 38 c~~a~~~L~~~g~~~~~~~~i~~~~~~~~~l~~~tg~~tvPqvFi~G~~IGG~ 90 (118)
T 2wem_A 38 SNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGC 90 (118)
T ss_dssp HHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEEETTEEEESH
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEECCEEECCH
T ss_conf 99999999973985369986148999999999862588777476999898789
No 216
>>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=29.22 E-value=40 Score=14.91 Aligned_cols=74 Identities=9% Similarity=0.131 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEE------ECCCCCCCHHCCCEE
Q ss_conf 26774678876655677764344332211359579994388771232123433981454------036776700115203
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVA------VVDTNSNPDLVDYVI 201 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIa------ivDTn~dp~~idypI 201 (278)
.+++..+... +.++-..+||.-...--++.-+|+....+..-.+.|..+|||||. ++.++.-.+.=+|.+
T Consensus 21 sg~~~~~~~~----l~~~i~~~Gg~~~~~~~~~tthli~~~~~~~k~~~a~~~~~~iV~~~Wl~~~~~~~~~~~~~~y~~ 96 (109)
T 2cou_A 21 LGFSDEEKHS----MEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQMDARAGETMYLY 96 (109)
T ss_dssp ESSCHHHHHH----HHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHTTSCCCGGGTBC
T ss_pred ECCCHHHHHH----HHHHHHHCCCEEEEECCCCCCEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHCCC
T ss_conf 3898799999----999999849889766178841799743687046788855746599999999998198898263116
Q ss_pred EECC
Q ss_conf 2157
Q gi|254780779|r 202 PGND 205 (278)
Q Consensus 202 P~ND 205 (278)
|...
T Consensus 97 ~~~~ 100 (109)
T 2cou_A 97 EKAN 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 8989
No 217
>>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii DSM2661} (A:)
Probab=29.07 E-value=39 Score=15.00 Aligned_cols=31 Identities=10% Similarity=0.266 Sum_probs=24.3
Q ss_pred CCEEEEECCC--------CCCHHHHHHHHCCCEEEEECC
Q ss_conf 9579994388--------771232123433981454036
Q gi|254780779|r 159 PDLMFVVDTN--------REKLAIQEARRLRIPIVAVVD 189 (278)
Q Consensus 159 P~~iiv~d~~--------~e~~Av~EA~kl~IPvIaivD 189 (278)
+|.||+..-. ....+++++...++|++|+|=
T Consensus 38 ~dgivi~GG~~~~~~~~~~~~~li~~~~~~~~PilGiC~ 76 (186)
T 2ywj_A 38 IDALIIPGGESTAIGKLMKKYGLLEKIKNSNLPILGTCA 76 (186)
T ss_dssp CSEEEECCSCHHHHHHHHHHTTHHHHHHTCCCCEEEETH
T ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEHH
T ss_conf 786898899985122111121045677507983898713
No 218
>>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} (A:138-262)
Probab=28.69 E-value=41 Score=14.85 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=25.7
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHH-CCCEECCCC
Q ss_conf 0788169960782357999999863-398314233
Q gi|254780779|r 64 ARGGRILFVATKSQASDCVMEAAKR-SAQYCVNSK 97 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~i~~~A~~-~~~~yV~~R 97 (278)
-++++||++|..--++.++...+.. ++.-++..|
T Consensus 2 l~~~~vliiGaGg~g~~v~~~L~~~Gv~~i~i~dr 36 (125)
T 2egg_A 2 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANR 36 (125)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 67876999767613688899999749962112000
No 219
>>2wt8_A Microcephalin; cell cycle, chromosome condensation, dwarfism, polymorphism, microcephaly, phosphoprotein, mental retardation, primary microcephaly; HET: MSE; 1.60A {Homo sapiens} (A:)
Probab=28.62 E-value=40 Score=14.92 Aligned_cols=43 Identities=7% Similarity=-0.029 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEE
Q ss_conf 7764344332211359579994388771232123433981454
Q gi|254780779|r 144 KLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVA 186 (278)
Q Consensus 144 kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIa 186 (278)
++-+.+||.-.-.--|+.-+++-......-+..|.+.|||||.
T Consensus 32 ~~i~~~Gg~~~~~~~~~~thlI~~~~~~~k~~~a~~~~~~iV~ 74 (97)
T 2wt8_A 32 TQLVDXGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVS 74 (97)
T ss_dssp HHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHHTCEEEC
T ss_pred HHHHHCCCEEEEEECCCCCEEEEECCCHHHHHHHHHCCCCCCC
T ss_conf 9999879999626658844899817982899989876975735
No 220
>>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} (A:181-349)
Probab=28.61 E-value=41 Score=14.84 Aligned_cols=141 Identities=9% Similarity=0.013 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEE-ECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999861078816996-078---2357999999863398314233458732342666555677899887
Q gi|254780779|r 46 SQTVPMLQKALQVISDTVARGGRILFV-ATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEE 121 (278)
Q Consensus 46 ~kT~~~L~~A~~~i~~i~~~gg~ILFV-gTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~ 121 (278)
.-.-..+.++...| .+-++.+|| |-. ..+.+.+.++++++|.|+++.-+-.|.+-.-. .
T Consensus 13 ~~~~~~i~~~~~~L----~~AkrPvii~G~~~~~~~~~~~l~~lae~~g~pv~~t~~~kg~~~~~~-------------p 75 (169)
T 1ovm_A 13 ACLKAFRDAAENKL----AMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQ-------------A 75 (169)
T ss_dssp HHHHHHHHHHHHHH----HTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSSCTTS-------------T
T ss_pred CCCHHHHHHHHHHH----HHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEECCCCCEECCCCC-------------C
T ss_conf 53067899999999----855886899576212353369999999866996122233314126666-------------5
Q ss_pred HHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCE
Q ss_conf 630121267-7467887665567776434433221135957999438877123212343398145403677670011520
Q gi|254780779|r 122 LLNKENQGF-TKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYV 200 (278)
Q Consensus 122 ~~~~~~~~~-tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idyp 200 (278)
..-|.+... ..... ...-.-+|+|+++++.-..... -......|--.++.-|.||..++.-
T Consensus 76 ~~~G~~~~~~~~~~~-----------------~~~l~~aDlvl~~G~~~~~~~~-~~~~~~~~~~~~I~i~~d~~~~~~~ 137 (169)
T 1ovm_A 76 GFYGTYSGSASTGAV-----------------KEAIEGADTVLCVGTRFTDTLT-AGFTHQLTPAQTIEVQPHAARVGDV 137 (169)
T ss_dssp TCCCCCCGGGSCHHH-----------------HHHHHTSSEEEEESCCCCTTTT-TTTCCCCCTTTEEEECSSEEEETTE
T ss_pred CCCCCCCCCCCHHHH-----------------HHHHHCCCEEEECCCCCCCCCC-CCCCCCCCCCCEEEECCCHHHHCCC
T ss_conf 346762465565999-----------------9998414401110434564444-5654457874046745878885743
Q ss_pred EEECCCCHHHHHHHHHHHHHH
Q ss_conf 321577268999999999999
Q gi|254780779|r 201 IPGNDDSSRSIALFCDLVASA 221 (278)
Q Consensus 201 IP~NDds~~si~l~~~~i~~a 221 (278)
-+..--=.-.+.-++..|.+.
T Consensus 138 ~~~~~~i~~d~~~~l~~L~~~ 158 (169)
T 1ovm_A 138 WFTGIPMNQAIETLVELCKQH 158 (169)
T ss_dssp EEESCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHHH
T ss_conf 147833777799999987630
No 221
>>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:1-109,A:240-289)
Probab=28.57 E-value=41 Score=14.83 Aligned_cols=62 Identities=26% Similarity=0.166 Sum_probs=39.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 359579994388771232123433981454036776700115203215772689999999999999999997443
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHS 231 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~ 231 (278)
+.+|.+|++.+..+.. ..+..+-+||+|-+ |..++...++|... |+. -+++|...|.-...+
T Consensus 65 ~~VDGIIl~~~~~~~~-~~~ll~~~iPvVlI-d~~~~~~~~~~V~~---D~~--------~~~~~~~~~~~~~~~ 126 (159)
T 3k9c_A 65 ERCEAAILLGTRFDTD-ELGALADRVPALVV-ARASGLPGVGAVRG---DAT--------HXAEAAVDGALAQIS 126 (159)
T ss_dssp TTEEEEEEETCCCCHH-HHHHHHTTSCEEEE-SSCCSSTTSEEEEE---CHH--------HHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHH-HHHHHHCCCCEEEE-CCCCCCCCCCCCCC---CHH--------HHHHHHHHHHHHHHC
T ss_conf 0975121102301588-99875444775863-24467555664456---599--------999999999999971
No 222
>>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* (A:1-30,A:456-572)
Probab=28.37 E-value=42 Score=14.81 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=58.4
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHH-HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 45899986088607547765788562102001881675389-99999999999999861078816996078235799999
Q gi|254780779|r 6 FTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLS-QTVPMLQKALQVISDTVARGGRILFVATKSQASDCVME 84 (278)
Q Consensus 6 ~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~-kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~ 84 (278)
+|.+-||.+|-|=. .--+|-|.++||= +.|+.+. ++-.....|..+...+...|-.+.+=-.......-++
T Consensus 21 ~~~~~~~~~~h~D~-~Gl~~P~~iAP~q------V~Iipi~~~~e~~~~~a~~l~~~L~~~gi~v~iDdr~~slgkKi~- 92 (147)
T 2j3l_A 21 LSHQILLRAGNADE-RGINWPTGIAPFD------LHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFA- 92 (147)
T ss_dssp HHHHHHHHTTHEET-TEECCCTTTSSCS------EEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHH-
T ss_pred HHHHHHHHCCHCCC-CCCCCCCCCCCCE------EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-
T ss_conf 52899987584467-8345687658947------999964788789999999999999978998999899999769999-
Q ss_pred HHHHCCCEEC---CCCCCCCCCC
Q ss_conf 9863398314---2334587323
Q gi|254780779|r 85 AAKRSAQYCV---NSKWLGGMMT 104 (278)
Q Consensus 85 ~A~~~~~~yV---~~RWlGG~LT 104 (278)
.|...|.||+ -.+.+.|+.+
T Consensus 93 ~a~~~GiP~~ivIG~~e~e~~V~ 115 (147)
T 2j3l_A 93 DADLIGCPIRITVGKKAVDGVVE 115 (147)
T ss_dssp HHHHHCCSEEEEECGGGGGTEEE
T ss_pred HHHHCCCCEEEEECCCCCCCEEE
T ss_conf 86863998899987874459199
No 223
>>2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} (A:)
Probab=28.29 E-value=20 Score=16.81 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=56.3
Q ss_pred CCCCEEEEEECC----HHHHHHHHHHHHHCCC--EECCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 078816996078----2357999999863398--314233--45873234266655567789988763012126774678
Q gi|254780779|r 64 ARGGRILFVATK----SQASDCVMEAAKRSAQ--YCVNSK--WLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKER 135 (278)
Q Consensus 64 ~~gg~ILFVgTk----~~~~~~i~~~A~~~~~--~yV~~R--WlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~ 135 (278)
.+.++|.+||-. +++... .+.....|- +.||-+ ++.|..+-
T Consensus 20 ~~p~~iAVvGas~~~~~~g~~v-~~~l~~~G~~V~~V~p~~~~i~g~~~~------------------------------ 68 (144)
T 2d59_A 20 TRYKKIALVGASPKPERDANIV-MKYLLEHGYDVYPVNPKYEEVLGRKCY------------------------------ 68 (144)
T ss_dssp HHCCEEEEETCCSCTTSHHHHH-HHHHHHTTCEEEEECTTCSEETTEECB------------------------------
T ss_pred HCCCEEEEECCCCCCCCCHHHH-HHHHHHCCCEEEEECCCCHHHCCCCCC------------------------------
T ss_conf 6689499991159999825999-999997899899989733300797456------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHCCCEEEEECCCCCCCHHCCCE
Q ss_conf 876655677764344332211359579994388-77123212343398145403677670011520
Q gi|254780779|r 136 LNIERKRDKLKRALDGIRDMGGLPDLMFVVDTN-REKLAIQEARRLRIPIVAVVDTNSNPDLVDYV 200 (278)
Q Consensus 136 ~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~-~e~~Av~EA~kl~IPvIaivDTn~dp~~idyp 200 (278)
..+.++..-||+++++-+. .-.-+++||..+|++.+=+.-..-+++..++.
T Consensus 69 --------------~sl~elp~~~Dlv~i~~p~~~~~~i~~e~~~~g~k~v~~~~~g~~e~~~~~a 120 (144)
T 2d59_A 69 --------------PSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQYNTYNREASKKA 120 (144)
T ss_dssp --------------SSGGGCSSCCSEEEECSCHHHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHH
T ss_pred --------------CCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf --------------6420146765079998588999999999997299999994264499999999
No 224
>>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} (A:)
Probab=28.20 E-value=41 Score=14.88 Aligned_cols=30 Identities=7% Similarity=0.067 Sum_probs=20.8
Q ss_pred CCEEEEECCCC------------CCHHHHHHHHCCCEEEEEC
Q ss_conf 95799943887------------7123212343398145403
Q gi|254780779|r 159 PDLMFVVDTNR------------EKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 159 P~~iiv~d~~~------------e~~Av~EA~kl~IPvIaiv 188 (278)
+|.|++..-.. ...+++.+..-++|++|+|
T Consensus 40 ~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~PilGiC 81 (191)
T 2ywd_A 40 LKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTC 81 (191)
T ss_dssp CSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEET
T ss_pred CCEEEECCCCHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEC
T ss_conf 585797697659999873430010120000004541589973
No 225
>>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein structure initiative; 2.43A {Pyrococcus furiosus dsm 3638} (A:249-369)
Probab=28.19 E-value=26 Score=16.08 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=29.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9579994388771232123433981454036776
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~ 192 (278)
|+.|+++|.....+.++.|..+|.+.=.++.-++
T Consensus 1 Pd~i~~~D~~g~i~~~N~a~~~g~~~~e~~g~~~ 34 (121)
T 3cax_A 1 PVDVTFIDKDDRVRFFSPGERIFTRTPSVLGRPV 34 (121)
T ss_dssp SSEEEEECTTSBEEEECCSSCSSCCCGGGTTCBT
T ss_pred CCCEEEEECCCCEEEECCCHHHCCCCHHHHCCCH
T ss_conf 8778999289818985752100489778719619
No 226
>>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green chemistry, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* (A:153-212,A:286-385)
Probab=28.14 E-value=42 Score=14.79 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=33.7
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHH
Q ss_conf 1078816996078235799999986339831423345873234266
Q gi|254780779|r 63 VARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKT 108 (278)
Q Consensus 63 ~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~t 108 (278)
..+|++|+.||....+.++....+.....-++..| +..++|+..
T Consensus 23 ~~~~k~V~ViG~g~sa~d~a~~l~~~~~~v~~~~r--~~~f~~~~~ 66 (160)
T 3gwf_A 23 SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVR--TPQFGDIAT 66 (160)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEES--SCCCSCTTT
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEE--CCCHHHHHH
T ss_conf 01566227983143321357898753141223652--475456654
No 227
>>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix K1} (A:1-129)
Probab=27.66 E-value=43 Score=14.73 Aligned_cols=36 Identities=19% Similarity=0.048 Sum_probs=26.3
Q ss_pred CCCEEEEECCCCC-CHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 5957999438877-12321234339814540367767
Q gi|254780779|r 158 LPDLMFVVDTNRE-KLAIQEARRLRIPIVAVVDTNSN 193 (278)
Q Consensus 158 lP~~iiv~d~~~e-~~Av~EA~kl~IPvIaivDTn~d 193 (278)
-||++++.-|... ...+.+|...|++++.---...+
T Consensus 71 ~~D~v~i~tp~~~~~~~~~~a~~~g~~v~~ekP~~~~ 107 (129)
T 2yv2_A 71 EINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIP 107 (129)
T ss_dssp TCCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 7538999416432088999998679878984267876
No 228
>>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} (A:1-129)
Probab=27.64 E-value=38 Score=15.07 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=23.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 3595799943887712321234339814540
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
+.|.+||.-+..-....+.-|++.|||++..
T Consensus 80 ~~~~iiit~~~~~~~~i~~~a~~~~iPil~t 110 (129)
T 1ko7_A 80 ETPAIIVTRDLEPPEELIEAAKEHETPLITS 110 (129)
T ss_dssp TCCCEEECTTCCCCHHHHHHHHHTTCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCEEEEC
T ss_conf 9988999799999899999999819839984
No 229
>>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} (A:)
Probab=27.60 E-value=43 Score=14.72 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=7.9
Q ss_pred CCCEEEECHHHHHHHHHHH
Q ss_conf 1881675389999999999
Q gi|254780779|r 37 RNNTHIIDLSQTVPMLQKA 55 (278)
Q Consensus 37 rngihIIdL~kT~~~L~~A 55 (278)
+-.|.|||..-+...+.++
T Consensus 23 ~~~I~vid~~~~~~~~~~~ 41 (219)
T 1q7r_A 23 NXKIGVLGLQGAVREHVRA 41 (219)
T ss_dssp CCEEEEESCGGGCHHHHHH
T ss_pred CCEEEEEECCCCHHHHHHH
T ss_conf 9779999638849999999
No 230
>>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=27.31 E-value=43 Score=14.69 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHCCCEEEE
Q ss_conf 776434433221135957-9994388771232123433981454
Q gi|254780779|r 144 KLKRALDGIRDMGGLPDL-MFVVDTNREKLAIQEARRLRIPIVA 186 (278)
Q Consensus 144 kl~k~lgGi~~m~~lP~~-iiv~d~~~e~~Av~EA~kl~IPvIa 186 (278)
++-..+||.-.-.=-++. .+|++......=+..|..+|||||.
T Consensus 44 ~~i~~~Gg~~~~~~~~~~thlv~~~~~~~~K~~~A~~~gi~iV~ 87 (112)
T 2ebu_A 44 SLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID 87 (112)
T ss_dssp HHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEE
T ss_pred HHHHHHCCEECCCCCCCCCEEEECCCCCHHHHHHHHHHCCCEEC
T ss_conf 99998479354774456678998699997899999990994836
No 231
>>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} (A:157-289)
Probab=27.14 E-value=44 Score=14.67 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999998610788169960782357-----9999998633983142334587323426665556778998876301
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATKSQAS-----DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNK 125 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk~~~~-----~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~ 125 (278)
.-+.|.+++.+.....++|+|++...... +-+++..+..+.......+.++.
T Consensus 4 ~g~~a~~~L~~~~~g~~~i~~i~g~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~----------------------- 60 (133)
T 1jx6_A 4 GSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKA----------------------- 60 (133)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHCCEEEEEECCCS-----------------------
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCC-----------------------
T ss_conf 999999999984699747998159998569999999999998632788515983799-----------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---CHHHHHHHHCCCEEEEECCC
Q ss_conf 212677467887665567776434433221135957999438877---12321234339814540367
Q gi|254780779|r 126 ENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE---KLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 126 ~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e---~~Av~EA~kl~IPvIaivDT 190 (278)
+..+... .++..| .....|++||+.+-..- ..|++|...-.|++||+=++
T Consensus 61 -----~~~~~~~------~~~~~l----~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~i~ivg~D~~ 113 (133)
T 1jx6_A 61 -----TKQSGYD------AAKASL----AKHPDVDFIYACSTDVALGAVDALAELGREDIMINGWGGG 113 (133)
T ss_dssp -----SHHHHHH------HHHHHH----HHCCCCSEEEESSHHHHHHHHHHHHHHTCTTSEEBCSBCC
T ss_pred -----CHHHHHH------HHHHHH----HCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf -----9999999------999975----4256662357437599999999998748988289816898
No 232
>>3irv_A Cysteine hydrolase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.60A {Pseudomonas syringae PV} (A:)
Probab=26.99 E-value=32 Score=15.57 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=33.0
Q ss_pred CCEEEEECCCCCC---HHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHH
Q ss_conf 9579994388771---2321234339814540367767001152032157726899
Q gi|254780779|r 159 PDLMFVVDTNREK---LAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSI 211 (278)
Q Consensus 159 P~~iiv~d~~~e~---~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si 211 (278)
.+-|+|.+...+. ..+++|..+|.-|+-+.|.-++ +..+..+.++.+.
T Consensus 139 i~~ivi~Gv~t~~CV~~Ta~~a~~~G~~v~vv~Da~as-----~~~~~~~aa~~~~ 189 (233)
T 3irv_A 139 VDTIIVCGTVTNVCCETTIRDGVHREYKVIALSDANAA-----MDYPDVGFGAVSA 189 (233)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEEC-----CCBCCSSSCCBCH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHCCC-----CCCCCCCCCCCCH
T ss_conf 43058886445522899999999879970451230103-----5653444344679
No 233
>>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} (A:1-173,A:394-415)
Probab=26.94 E-value=33 Score=15.44 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=17.0
Q ss_pred HHHHHHHHC--CCEEEEECCCCC----CCHHCCCEEEEC
Q ss_conf 232123433--981454036776----700115203215
Q gi|254780779|r 172 LAIQEARRL--RIPIVAVVDTNS----NPDLVDYVIPGN 204 (278)
Q Consensus 172 ~Av~EA~kl--~IPvIaivDTn~----dp~~idypIP~N 204 (278)
.+++-|+++ ++|-|++.||-. +|.--.|+||-.
T Consensus 137 ~~i~a~~~~~P~~p~vavFDTaFH~tlp~~Ar~yaIP~~ 175 (195)
T 2e1z_A 137 SGIDAARHLFPAVRQVAVFDTSFHQTLAPEAYLYGLPEE 175 (195)
T ss_dssp HHHHHHHHHCTTSEEEEEETTGGGGGCCHHHHCCSSCHH
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCHH
T ss_conf 999999986899986999678213676786865189979
No 234
>>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; 1.65A {Acinetobacter baumannii} PDB: 2wta_A* (A:)
Probab=26.59 E-value=45 Score=14.61 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=25.7
Q ss_pred CCEEEEECCCCC---CHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 957999438877---12321234339814540367767
Q gi|254780779|r 159 PDLMFVVDTNRE---KLAIQEARRLRIPIVAVVDTNSN 193 (278)
Q Consensus 159 P~~iiv~d~~~e---~~Av~EA~kl~IPvIaivDTn~d 193 (278)
-+-|+|.+...+ ...+++|..+|..|+-+.|--++
T Consensus 167 i~~lii~Gi~t~~CV~~Ta~~a~~~g~~V~vv~Da~~~ 204 (235)
T 2wt9_A 167 IDTVYVVGIATDFCVAWTALDAVKQGFKTLVIEDACKG 204 (235)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 99899998765638999999999879989995857574
No 235
>>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} (B:56-304)
Probab=26.52 E-value=24 Score=16.39 Aligned_cols=19 Identities=11% Similarity=0.378 Sum_probs=10.0
Q ss_pred HHHHHHCCCEEEEECCCCC
Q ss_conf 2123433981454036776
Q gi|254780779|r 174 IQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 174 v~EA~kl~IPvIaivDTn~ 192 (278)
+.......+|+|+++.-.|
T Consensus 129 ~~~~~~~~vP~i~vi~g~~ 147 (249)
T 2f9y_B 129 LAKMQERGLPYISVLTDPT 147 (249)
T ss_dssp HHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHCCCCEEEEECCCC
T ss_conf 9999967997467723786
No 236
>>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} (A:273-523)
Probab=26.35 E-value=26 Score=16.08 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=4.5
Q ss_pred CCCCCCCCCC
Q ss_conf 3345873234
Q gi|254780779|r 96 SKWLGGMMTN 105 (278)
Q Consensus 96 ~RWlGG~LTN 105 (278)
..|.||.+.=
T Consensus 63 ~~~~gGs~~~ 72 (251)
T 1on3_A 63 PSVMSGCLDI 72 (251)
T ss_dssp TTSGGGCBCH
T ss_pred CCCCCCCCCC
T ss_conf 6412688880
No 237
>>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:105-237)
Probab=26.24 E-value=45 Score=14.57 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHH---HHHHHH---HHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999986107881699607823---579999---998633983142334587323426665556778998876301
Q gi|254780779|r 52 LQKALQVISDTVARGGRILFVATKSQ---ASDCVM---EAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNK 125 (278)
Q Consensus 52 L~~A~~~i~~i~~~gg~ILFVgTk~~---~~~~i~---~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~ 125 (278)
-+.|.+.+-+.....++|+|++.... .++-.. +.....+.+.......++.-
T Consensus 5 g~~a~~~L~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~---------------------- 62 (133)
T 2ioy_A 5 GEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQAADFD---------------------- 62 (133)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTC----------------------
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----------------------
T ss_conf 9999999998669998799997999986999999999999987899805777516411----------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCC---CEEEEECCC
Q ss_conf 21267746788766556777643443322113595799943887712321234339---814540367
Q gi|254780779|r 126 ENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLR---IPIVAVVDT 190 (278)
Q Consensus 126 ~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~---IPvIaivDT 190 (278)
..+.....++. -.....|+++|+.+-..-.-+++.++++| |+++|+=|+
T Consensus 63 ------~~~~~~~~~~~----------l~~~~~~~~i~~~~d~~a~g~~~al~~~gp~di~iig~d~~ 114 (133)
T 2ioy_A 63 ------RSKGLSVMENI----------LQAQPKIDAVFAQNDEMALGAIKAIEAANRQGIIVVGFDGT 114 (133)
T ss_dssp ------HHHHHHHHHHH----------HHHCSCCCEEEESSHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred ------HHHHHHHHHHH----------HHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf ------79999999999----------85696983999678088887799999819998779985370
No 238
>>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, CT, tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A (A:33-157,A:224-353)
Probab=25.69 E-value=32 Score=15.58 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=30.2
Q ss_pred HHHHHCCCCCEEEEECCCCC------------CHHHHHHHHCCCEEEEECCCCC
Q ss_conf 33221135957999438877------------1232123433981454036776
Q gi|254780779|r 151 GIRDMGGLPDLMFVVDTNRE------------KLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 151 Gi~~m~~lP~~iiv~d~~~e------------~~Av~EA~kl~IPvIaivDTn~ 192 (278)
|+-.+.+.|=.|+..|+..- .-+++-|...++|+|-++||-.
T Consensus 66 g~~~i~G~~V~vva~d~~f~gGs~~~~~~~K~~r~i~~a~~~~~Pli~l~dsgG 119 (255)
T 3k8x_A 66 TPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSG 119 (255)
T ss_dssp CSSCTTCEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCC
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 987889968999987465206578789999999999999983999899965888
No 239
>>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* (A:28-234,A:388-429)
Probab=25.28 E-value=47 Score=14.46 Aligned_cols=56 Identities=30% Similarity=0.534 Sum_probs=38.5
Q ss_pred CCEEEEEC---CCCCCHHHHHH---HHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 95799943---88771232123---43398145403677670011520321577268999999999999999
Q gi|254780779|r 159 PDLMFVVD---TNREKLAIQEA---RRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAID 224 (278)
Q Consensus 159 P~~iiv~d---~~~e~~Av~EA---~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~ 224 (278)
=+++|++. .......+.|. +.++|+||++ |.-||-=||+|- +=.+||..|+....-
T Consensus 163 I~~LviIGGdgS~~~a~~L~e~~~~~~~~i~VvgI------PKTIDNDi~~n~----~D~~~c~~l~~~Avh 224 (249)
T 2hig_A 163 VNILFTVGGDGTQRGALVISQEAKRRGVDISVFGV------PKTIDNDLSFSA----NDALFCATLATLAVH 224 (249)
T ss_dssp CSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEE------ECCTTSSCCCCH----HHHHHHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEC------CCCCCCCCCCCH----HHHHHHHHHHHHHHH
T ss_conf 98899964707899999999998861898328833------642267777787----899999999999999
No 240
>>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} (A:374-487,A:649-729)
Probab=25.16 E-value=47 Score=14.44 Aligned_cols=131 Identities=16% Similarity=0.146 Sum_probs=73.4
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCC--CCCCCCCCHHHHHH--HHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 10788169960782357999999863398314233--45873234266655--567789988763012126774678876
Q gi|254780779|r 63 VARGGRILFVATKSQASDCVMEAAKRSAQYCVNSK--WLGGMMTNWKTVSQ--SIQKLRDLEELLNKENQGFTKKERLNI 138 (278)
Q Consensus 63 ~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~R--WlGG~LTN~~ti~~--si~~l~~l~~~~~~~~~~~tkKe~~~~ 138 (278)
.....+|+.||.-+..-..-...|++=-..-+.++ .+||.++....+.. ....+.++..
T Consensus 13 ~~~~k~VlVIGaGPAGLeAA~~LarrG~~VtLiE~~~~iGG~v~~~~~~pg~~~~~~~~~~~~----------------- 75 (195)
T 1o94_A 13 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRE----------------- 75 (195)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHH-----------------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH-----------------
T ss_conf 566866999831678999999997579948999630542100123335775023456799999-----------------
Q ss_pred HHHHHHHHHHHHH------------HHHHCCCCCEEEEECCCCCCHHHH--HHHHCCCEE-EEECCCCCCCHHCCCEEEE
Q ss_conf 6556777643443------------322113595799943887712321--234339814-5403677670011520321
Q gi|254780779|r 139 ERKRDKLKRALDG------------IRDMGGLPDLMFVVDTNREKLAIQ--EARRLRIPI-VAVVDTNSNPDLVDYVIPG 203 (278)
Q Consensus 139 ~r~~~kl~k~lgG------------i~~m~~lP~~iiv~d~~~e~~Av~--EA~kl~IPv-IaivDTn~dp~~idypIP~ 203 (278)
++..++....-+ -.-+..-+|+|++--.......-+ |....+||. ..|-|... |.
T Consensus 76 -~ql~~l~~~~~~v~~~l~~~~~~~~~i~~~~~D~ViiAT~l~~~l~~~~~~~~~~~~~~v~~iGD~~~-p~-------- 145 (195)
T 1o94_A 76 -TQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATTLWNELKARESEWAENDIKGIYLIGDAEA-PR-------- 145 (195)
T ss_dssp -HHHHHHHHHSTTCEEECSCCCCCHHHHHTSCCSEEEECCHHHHHHHHTGGGTGGGTCCEEEECGGGTS-CC--------
T ss_pred -HHHHHHHHCCEEEEECCCCCEEEEEEHHEECCCEEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCC-CC--------
T ss_conf -99999873264644304640365310110148658992079998765341113578999899818162-10--------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 577268999999999999999999744310
Q gi|254780779|r 204 NDDSSRSIALFCDLVASAAIDGIARQHSYM 233 (278)
Q Consensus 204 NDds~~si~l~~~~i~~ai~~g~~~~~~~~ 233 (278)
.|+.||-+|......-.
T Consensus 146 -------------~i~~Ai~~g~~~ar~~~ 162 (195)
T 1o94_A 146 -------------LIADATFTGHRVAREIE 162 (195)
T ss_dssp -------------CHHHHHHHHHHHHHTTT
T ss_pred -------------HHHHHHHHHHHHHHHHC
T ss_conf -------------79999999999999857
No 241
>>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} (A:1-179)
Probab=24.83 E-value=48 Score=14.40 Aligned_cols=144 Identities=11% Similarity=0.021 Sum_probs=72.1
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH-HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 67538999999999999999861078816996078235-79999998633983142334587323426665556778998
Q gi|254780779|r 41 HIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQA-SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119 (278)
Q Consensus 41 hIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~-~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l 119 (278)
.++-.+.....|..++..-..-...++.+||.|--=.. ..+.+..|...+.++.. +-+.....-..+..-+.....-
T Consensus 26 ~ivg~e~~k~~l~~~i~~~~~~~~~~~~iLl~GppGtGKT~~A~~la~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 103 (179)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV--TSGPVLVKQGDMAAILTSLERG 103 (179)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE--EETTTCCSHHHHHHHHHHCCTT
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCC--CCCCCCCCHHHHHHHHHHHCCC
T ss_conf 80596999999999999988428888817888989988999999999822887455--7785322478999999750246
Q ss_pred HHHHHCCCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEE
Q ss_conf 8763012126774678876-----655677764344332211359579994388771232123433981454
Q gi|254780779|r 120 EELLNKENQGFTKKERLNI-----ERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVA 186 (278)
Q Consensus 120 ~~~~~~~~~~~tkKe~~~~-----~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIa 186 (278)
.-..-.+.+.+.++..-.+ ..+...+.....-..++..-+.-++++.+.+....+.||.+-..+.+-
T Consensus 104 ~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ttn~~~~i~~al~~Rf~~~~ 175 (179)
T 1in4_A 104 DVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIIL 175 (179)
T ss_dssp CEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEE
T ss_pred CCHHHHHHHHHCHHHHHHCCCCCCCCEEEEEECCCCCCHHHCCCCCCEEEEEECCCCCCCCHHHHHHEEEEE
T ss_conf 401134575423577875234100206888854763120111467765899860476535356663301365
No 242
>>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-78)
Probab=24.15 E-value=49 Score=14.32 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=23.3
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 2113595799943887712321234339814540
Q gi|254780779|r 154 DMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 154 ~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
.+.+-+|+++++.--.--.-......-+||++|+
T Consensus 37 ~~~~~~Dlvi~iGGDGT~L~a~~~~~~~~PvlGi 70 (78)
T 1yt5_A 37 PGRVTADLIVVVGGDGTVLKAAKKAADGTPMVGF 70 (78)
T ss_dssp CSCBCCSEEEEEECHHHHHHHHTTBCTTCEEEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEE
T ss_conf 5567878999989859999999971779988976
No 243
>>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily; 1.45A {Salmonella typhimurium LT2} (A:1-97)
Probab=24.01 E-value=50 Score=14.30 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=35.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf 595799943887712321234339814540367767001
Q gi|254780779|r 158 LPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDL 196 (278)
Q Consensus 158 lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~ 196 (278)
-++-.+++|+..-...++...+.+.++-+++-|.+.+|-
T Consensus 27 ~~~~~~liD~g~~~~~~~~l~~~~~~i~~ii~TH~H~DH 65 (97)
T 2qed_A 27 DEGRCVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDH 65 (97)
T ss_dssp TTSEEEEECCSCHHHHHHHHHHHTCEEEEEECCSCCHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 897089984865499999999759955698704557443
No 244
>>1c8b_A Spore protease; novel fold; 3.00A {Bacillus megaterium} (A:36-371)
Probab=23.96 E-value=27 Score=16.06 Aligned_cols=44 Identities=30% Similarity=0.507 Sum_probs=32.6
Q ss_pred CCCEEEEECCC--------------------------CCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCC
Q ss_conf 59579994388--------------------------77123212343398145403677670011520321577
Q gi|254780779|r 158 LPDLMFVVDTN--------------------------REKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDD 206 (278)
Q Consensus 158 lP~~iiv~d~~--------------------------~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDd 206 (278)
.||+|+++|.- +...++.| ..|||||||| .=|+.||-..-+||.
T Consensus 151 kPd~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~-etLGVPVIAI----GVPTVVdA~tI~~Dt 220 (336)
T 1c8b_A 151 NPDFIIAIDALAARSIERVNATIQISDSGIHPGSGVGNKRKEISY-ETLGIPVIAI----GIPTVVDAVSITSDT 220 (336)
T ss_dssp CCSEEEEEEEECCSSGGGSSSEEEEETTCBCSCSSSSCCCCBSSS-CCC-------------CCCEEEEEEECCE
T ss_pred CCCEEEEECHHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCH-HHCCCCEEEE----CCCEEECHHHHHHHH
T ss_conf 898999960101475233356478667785888776755563798-7829988997----688076018876899
No 245
>>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:1-162,A:293-349)
Probab=23.88 E-value=50 Score=14.29 Aligned_cols=47 Identities=11% Similarity=0.180 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCCCC-HHHHHHHHCCCEEEEECCCCCCC-H--HCCCEEEE
Q ss_conf 359579994388771-23212343398145403677670-0--11520321
Q gi|254780779|r 157 GLPDLMFVVDTNREK-LAIQEARRLRIPIVAVVDTNSNP-D--LVDYVIPG 203 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~-~Av~EA~kl~IPvIaivDTn~dp-~--~idypIP~ 203 (278)
+..|.+|+..+..+. ..+.++...|||+|-+-....++ + .+|||--|
T Consensus 117 ~~vdGIIi~~~~~~~~~~~~~l~~~~iPvV~iD~~~~~~~~sV~~D~~~~~ 167 (219)
T 1jye_A 117 QRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSFRLLG 167 (219)
T ss_dssp TTCSCEEEESCCCHHHHHHHHHHTTTSCEEESSSCTTSSSCEEEECHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECHHHHH
T ss_conf 377763013664302567999850589668851467888874663199999
No 246
>>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} (A:)
Probab=23.85 E-value=50 Score=14.28 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=53.2
Q ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 61078816996078235799999986339831423345873234266655567789988763012126774678876655
Q gi|254780779|r 62 TVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERK 141 (278)
Q Consensus 62 i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~ 141 (278)
+..++++||.|--.+.....+.......|.-...- . +-.+.+.+.++
T Consensus 3 ~~~~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a-------~--------------------------~~~~al~~l~~ 49 (154)
T 3gt7_A 3 LSNRAGEILIVEDSPTQAEHLKHILEETGYQTEHV-------R--------------------------NGREAVRFLSL 49 (154)
T ss_dssp ----CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE-------S--------------------------SHHHHHHHHTT
T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEE-------C--------------------------CHHHHHHHHCC
T ss_conf 99999909999899999999999999879999980-------7--------------------------72778764226
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEC--CCCCCHHHHHHH-----HCCCEEEEECCCCCCCHH
Q ss_conf 6777643443322113595799943--887712321234-----339814540367767001
Q gi|254780779|r 142 RDKLKRALDGIRDMGGLPDLMFVVD--TNREKLAIQEAR-----RLRIPIVAVVDTNSNPDL 196 (278)
Q Consensus 142 ~~kl~k~lgGi~~m~~lP~~iiv~d--~~~e~~Av~EA~-----kl~IPvIaivDTn~dp~~ 196 (278)
..||+|++=- |..+-..+-+-. .-++|+|.+.-.....+.
T Consensus 50 ---------------~~~dlii~D~~lp~~dg~el~~~ir~~~~~~~~pii~lt~~~~~~~~ 96 (154)
T 3gt7_A 50 ---------------TRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDV 96 (154)
T ss_dssp ---------------CCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHH
T ss_pred ---------------CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH
T ss_conf ---------------55434676114478877899999985523567708996068999999
No 247
>>2vq7_A Flavin-containing monooxygenase; NADP, drug metabolism NADP, oxidoreductase, drug metabolism; HET: FAD NAP EPE PGE PG4; 2.60A {Methylophaga SP} PDB: 2vqb_A* (A:177-295)
Probab=23.57 E-value=51 Score=14.25 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=30.4
Q ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 610788169960782357999999863398314233
Q gi|254780779|r 62 TVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSK 97 (278)
Q Consensus 62 i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~R 97 (278)
....|++|++||....+.++....+..+..-++..|
T Consensus 22 ~~~~gk~V~VIG~g~sa~d~a~~l~~~~~~v~~~~r 57 (119)
T 2vq7_A 22 LEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCY 57 (119)
T ss_dssp GGGTTCEEEEECSSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEE
T ss_conf 774797599978877789989999863370279997
No 248
>>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:107-247)
Probab=23.23 E-value=52 Score=14.21 Aligned_cols=106 Identities=8% Similarity=-0.084 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHH------HHHHHHHHHCCC-EECCCCC-CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998610788169960782357------999999863398-3142334-5873234266655567789988763
Q gi|254780779|r 52 LQKALQVISDTVARGGRILFVATKSQAS------DCVMEAAKRSAQ-YCVNSKW-LGGMMTNWKTVSQSIQKLRDLEELL 123 (278)
Q Consensus 52 L~~A~~~i~~i~~~gg~ILFVgTk~~~~------~~i~~~A~~~~~-~yV~~RW-lGG~LTN~~ti~~si~~l~~l~~~~ 123 (278)
-+.|...+-+.....++|.|++...... .-.....+..+. +.+...| ..+..+.. ...+....+..
T Consensus 5 g~~a~~~l~~~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----- 78 (141)
T 3l49_A 5 GAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQ-SAYSNVTDMLT----- 78 (141)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHH-HHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHH-HHHHHHHHHHH-----
T ss_conf 999999999974999779999267555225699999999998789982453352034787689-99999999998-----
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCC---CEEEEECCCC
Q ss_conf 0121267746788766556777643443322113595799943887712321234339---8145403677
Q gi|254780779|r 124 NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLR---IPIVAVVDTN 191 (278)
Q Consensus 124 ~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~---IPvIaivDTn 191 (278)
...-...|+++|+.+-..-.-+++.+.+.| |.+||+-|+.
T Consensus 79 ----------------------------~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~ivg~d~~~ 121 (141)
T 3l49_A 79 ----------------------------KYPNEGDVGAIWACWDVPMIGATQALQAAGRTDIRTYGVDGSP 121 (141)
T ss_dssp ----------------------------HCCSTTSCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEEECCH
T ss_pred ----------------------------HHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCH
T ss_conf ----------------------------6124676756996786789999999998299985799984998
No 249
>>3l83_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2, protein structure initiative; 1.50A {Methylobacillus flagellatus} (A:)
Probab=23.07 E-value=52 Score=14.19 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=6.9
Q ss_pred HHHHHHHCCCEEEEEC
Q ss_conf 3212343398145403
Q gi|254780779|r 173 AIQEARRLRIPIVAVV 188 (278)
Q Consensus 173 Av~EA~kl~IPvIaiv 188 (278)
.+++|...++|++|||
T Consensus 74 li~~~~~~~~PvLGIC 89 (250)
T 3l83_A 74 LIRDAVAQRVPVIGHC 89 (250)
T ss_dssp HHHHHHHTTCCEEEET
T ss_pred HHHHHHHCCCCEEEEE
T ss_conf 9999998699889986
No 250
>>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} (A:50-315)
Probab=22.99 E-value=52 Score=14.18 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 999999999999999861078816996078235799999986
Q gi|254780779|r 46 SQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAK 87 (278)
Q Consensus 46 ~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~ 87 (278)
-||..++..|+ ..+.+|+.++|+.+-.....++.....
T Consensus 31 GKT~l~~~~~~----~~~~~g~~~~~~~~e~~~~~~~~r~~~ 68 (266)
T 3bh0_A 31 GKTAFALKQAK----NMSDNDDVVNLHSLEMGKKENIKRLIV 68 (266)
T ss_dssp SHHHHHHHHHH----HHHTTTCEEEEEESSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 14899999999----875014725896226407899999999
No 251
>>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} (A:197-211,A:342-494)
Probab=22.98 E-value=52 Score=14.18 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=37.9
Q ss_pred CCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 2102001881675389999999999999998610788169960782357999999863
Q gi|254780779|r 31 RYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKR 88 (278)
Q Consensus 31 ~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~ 88 (278)
||+-|.|-.---.||.--...+.....-+-.....++-++|+.++..+..+.......
T Consensus 1 ~~~~~~~~~~~~~~~~~k~~~l~~~i~~~~~~~~~~k~lvf~~~~~~~~~l~~~L~~~ 58 (168)
T 1wp9_A 1 PYVKGIRFEWVRVDLHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD 58 (168)
T ss_dssp GGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT
T ss_pred HHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 3214564037995043589999999888874067753111010288899999998646
No 252
>>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} (A:281-550)
Probab=22.70 E-value=41 Score=14.87 Aligned_cols=31 Identities=23% Similarity=0.158 Sum_probs=24.6
Q ss_pred CCCEEEEECCC------CCCHHHHHHHHCCCEEEEEC
Q ss_conf 59579994388------77123212343398145403
Q gi|254780779|r 158 LPDLMFVVDTN------REKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 158 lP~~iiv~d~~------~e~~Av~EA~kl~IPvIaiv 188 (278)
.||.+++.... ....++++|...++|+.|||
T Consensus 75 ~~dgivl~ggp~~~~~~~~~~~i~~~~~~~~PiLGIC 111 (270)
T 1vco_A 75 DVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGIC 111 (270)
T ss_dssp TCSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEET
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 3781783266776760689999998987471288887
No 253
>>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} (A:1-222,A:384-415)
Probab=22.62 E-value=53 Score=14.13 Aligned_cols=128 Identities=11% Similarity=-0.048 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999986107881699607823579999998633983142334-587323426665556778998876301212
Q gi|254780779|r 50 PMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKW-LGGMMTNWKTVSQSIQKLRDLEELLNKENQ 128 (278)
Q Consensus 50 ~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RW-lGG~LTN~~ti~~si~~l~~l~~~~~~~~~ 128 (278)
-.+.-...+.+.+++.|=.|.|+++......+-.......-........ -...-.++......+ ..+..
T Consensus 12 GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------- 81 (254)
T 1iir_A 12 GDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFT---TEAIA------- 81 (254)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEECCC-------CCSCCCHHHHHHHH---HHHHH-------
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCHHHHHHCCCCCCHHHHHHHH---HHHHH-------
T ss_conf 48999999999999889979999683356667657986997798666654215521389999999---99999-------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEEC
Q ss_conf 6774678876655677764344332211359579994388771232123433981454036776700115203215
Q gi|254780779|r 129 GFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGN 204 (278)
Q Consensus 129 ~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~N 204 (278)
...+.++..+. ...|+.+++.|.. ...+..=|.++|||+|.+.-+.+..-...++-|..
T Consensus 82 -----------~~~~~~~~l~~-----~~~~~~~ii~d~~-~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~ 140 (254)
T 1iir_A 82 -----------TQFDEIPAAAE-----GCAAVVTTGLLAA-AIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPL 140 (254)
T ss_dssp -----------HHHHHHHHHTT-----TCSEEEEESCHHH-HHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC-
T ss_pred -----------HHHHHHHHHHH-----CCCCEEEEEEEEC-HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCC
T ss_conf -----------99999999861-----0430350089972-55899999983998021025531232232145543
No 254
>>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} (A:160-224,A:340-392)
Probab=22.43 E-value=53 Score=14.11 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=34.3
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCC---CCCCCCCCH
Q ss_conf 10788169960782357999999863398314233---458732342
Q gi|254780779|r 63 VARGGRILFVATKSQASDCVMEAAKRSAQYCVNSK---WLGGMMTNW 106 (278)
Q Consensus 63 ~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~R---WlGG~LTN~ 106 (278)
...|++|++||....+.++....+..+..-++..| |+.=.+-.|
T Consensus 24 ~~~gk~VvVVG~g~Sa~e~a~~l~~~a~~Vti~~r~~~~~~~~~~~~ 70 (118)
T 1w4x_A 24 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPLEIDY 70 (118)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEEEESSH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCH
T ss_conf 23787058983684232232666520541357605886321367747
No 255
>>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} (A:1-139,A:277-286)
Probab=22.39 E-value=53 Score=14.10 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=24.5
Q ss_pred HCCCCCEEEEECCCCC-CHHHHHHHHCCCEEEEE
Q ss_conf 1135957999438877-12321234339814540
Q gi|254780779|r 155 MGGLPDLMFVVDTNRE-KLAIQEARRLRIPIVAV 187 (278)
Q Consensus 155 m~~lP~~iiv~d~~~e-~~Av~EA~kl~IPvIai 187 (278)
+..-+|+||++.--.- ..|++.....++|++||
T Consensus 72 ~~~~~Dlvi~lGGDGT~L~a~~~~~~~~~PilgI 105 (149)
T 1u0t_A 72 AADGCELVLVLGGDGTFLRAAELARNASIPVLGV 105 (149)
T ss_dssp ----CCCEEEEECHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 4456558999758778999999750358837985
No 256
>>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain, structural genomics, NPPSFA; 1.84A {Thermus thermophilus HB8} (A:)
Probab=22.35 E-value=54 Score=14.10 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 7665567776434433221135957999438877
Q gi|254780779|r 137 NIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE 170 (278)
Q Consensus 137 ~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e 170 (278)
.+.+....+.+.++.--.|...|.+.|+.|..-|
T Consensus 61 ~L~~~~~~iR~~l~~~l~lr~~P~L~F~~D~~~e 94 (95)
T 2dyj_A 61 ALSRAERRLVAALARRVRMRRLPRLEFLPWRASP 94 (95)
T ss_dssp HHHHTHHHHHHHHHTTSCCSSCCEEEEEEGGGCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 9999899999999866798079868998559988
No 257
>>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A (A:)
Probab=22.34 E-value=35 Score=15.32 Aligned_cols=30 Identities=30% Similarity=0.330 Sum_probs=19.8
Q ss_pred CCEEEEEC-CC--C---CCHHHHHHHHCCCEEEEEC
Q ss_conf 95799943-88--7---7123212343398145403
Q gi|254780779|r 159 PDLMFVVD-TN--R---EKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 159 P~~iiv~d-~~--~---e~~Av~EA~kl~IPvIaiv 188 (278)
++.+.... +. . +..++++|...+||+.|||
T Consensus 91 ~~~~~~~~~p~~~~d~~~~~~i~~a~~~~iPiLGIC 126 (289)
T 2v4u_A 91 ADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVX 126 (289)
T ss_dssp CSEEEECSCCSSTTHHHHHHHHHHHHHTTCCEEEET
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 883883577887774379999999997583077888
No 258
>>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A (A:)
Probab=22.32 E-value=54 Score=14.09 Aligned_cols=32 Identities=3% Similarity=-0.068 Sum_probs=15.9
Q ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEECCCCC
Q ss_conf 81699607823579999998633983142334
Q gi|254780779|r 67 GRILFVATKSQASDCVMEAAKRSAQYCVNSKW 98 (278)
Q Consensus 67 g~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RW 98 (278)
-+|+++.+..++...........+.-...-++
T Consensus 36 ~~i~iid~~~~~~~~~~~~~~~~~~~v~~~~~ 67 (301)
T 2vdj_A 36 LKIAILNLMPTKQETEAQLLRLIGNTPLQLDV 67 (301)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHTCSSSCEEE
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 21365507897178999999985677664588
No 259
>>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} (A:107-223)
Probab=22.00 E-value=37 Score=15.11 Aligned_cols=35 Identities=6% Similarity=-0.114 Sum_probs=27.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEE---EEECCCC
Q ss_conf 3595799943887712321234339814---5403677
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPI---VAVVDTN 191 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPv---IaivDTn 191 (278)
..|+++|+.+-..-.-+++.|..+|+.| |+++--|
T Consensus 74 ~~~~ai~~~~d~~a~~~l~~~~~~g~~iP~di~ivgfd 111 (117)
T 3jy6_A 74 DQKTVAFALKERWLLEFFPNLIISGLIDNQTVTATGFA 111 (117)
T ss_dssp SSCEEEEESSHHHHHHHSHHHHHSSSCCSSSEEEEEBC
T ss_pred CCCHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 10000112220134433456666522577631124668
No 260
>>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:1-157,A:286-333)
Probab=21.86 E-value=55 Score=14.03 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=33.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC-CCHHHHHHHHHHH
Q ss_conf 595799943887712321234339814540367767001152032157-7268999999999
Q gi|254780779|r 158 LPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND-DSSRSIALFCDLV 218 (278)
Q Consensus 158 lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND-ds~~si~l~~~~i 218 (278)
-+|.+|++. .+.+....+||+|.+-.. .+-..++|..+-.. -...++.|+..++
T Consensus 119 ~vdGIIi~p------~i~~l~~~~iPvV~Id~~-~~~~~~~sV~~D~~~~~~~~~~~~~~~~ 173 (205)
T 3jvd_A 119 QAAGIIHVP------VVGSIAPEGIPMVQLTRG-ELGPGFPRVLCDHEEMGKEAVRLLVDLI 173 (205)
T ss_dssp TCSEEEECC------CTTCCC-CCSCEEEECC-----CCSCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCC------CCCCCCCCCCCEEEECCC-CCCCCCCEEEECHHHHHHHHHHHHHHHH
T ss_conf 101124676------210000024532565045-6789998899569999999999999996
No 261
>>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:108-243,A:302-316)
Probab=21.76 E-value=55 Score=14.02 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=21.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCC---CEEEEE
Q ss_conf 3595799943887712321234339---814540
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLR---IPIVAV 187 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~---IPvIai 187 (278)
..|+++|+.+...-.-+++.+..+| |++||+
T Consensus 81 ~~~~ai~~~~d~~a~g~~~al~~~g~~~i~ivgf 114 (151)
T 1tjy_A 81 PDLDAIIAPDANALPAAAQAAENLKRNNLAIVGF 114 (151)
T ss_dssp SSCCEEEECSTTHHHHHHHHHHHTTCCSCEEEEB
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9851999788689999999999769998579998
No 262
>>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} (A:1-20,A:305-587)
Probab=21.67 E-value=47 Score=14.49 Aligned_cols=15 Identities=7% Similarity=-0.121 Sum_probs=8.2
Q ss_pred CCCCCCCHHC-CCEEE
Q ss_conf 3677670011-52032
Q gi|254780779|r 188 VDTNSNPDLV-DYVIP 202 (278)
Q Consensus 188 vDTn~dp~~i-dypIP 202 (278)
+|..-+|+.+ .|+.|
T Consensus 180 ~~~~~~~~~~~~~a~~ 195 (303)
T 1pix_A 180 GGPQGNDTNAFSIGTA 195 (303)
T ss_dssp TCTTCTTTEEEEEECT
T ss_pred CCCCCCCCEEEEECCC
T ss_conf 4765688613772188
No 263
>>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} (A:1-103)
Probab=21.60 E-value=49 Score=14.33 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHCCCEEEEECCC
Q ss_conf 6434433221135957999438877-12321234339814540367
Q gi|254780779|r 146 KRALDGIRDMGGLPDLMFVVDTNRE-KLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 146 ~k~lgGi~~m~~lP~~iiv~d~~~e-~~Av~EA~kl~IPvIaivDT 190 (278)
+.+.-.-......|++|+.-....| ..+|+=|+..+||++...--
T Consensus 33 ~~~~~~~~~~~~~P~aVv~P~s~eeV~~iv~~a~~~~ipv~~rggG 78 (103)
T 1f0x_A 33 ARYRKGFRSGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAAN 78 (103)
T ss_dssp HHHHBCSSSCBBCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSC
T ss_pred HHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 8870765446778767995099999999999999879829997899
No 264
>>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:110-239)
Probab=21.60 E-value=55 Score=14.00 Aligned_cols=109 Identities=9% Similarity=0.040 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHH-----HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999861078816996078235-----7999999863398314233458732342666555677899887630121
Q gi|254780779|r 53 QKALQVISDTVARGGRILFVATKSQA-----SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 53 ~~A~~~i~~i~~~gg~ILFVgTk~~~-----~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
+.|...+.+ ..-.+|.||+..... ..-..+.....+.++...-+..+...-..
T Consensus 6 ~~a~~~L~~--~G~r~i~~i~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~-------------------- 63 (130)
T 3k9c_A 6 TLAVDHLTE--LGHRNIAHIDGADAPGGADRRAGFLAAXDRHGLSASATVVTGGTTETEG-------------------- 63 (130)
T ss_dssp HHHHHHHHH--TTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHH--------------------
T ss_pred CHHHHHEEC--CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH--------------------
T ss_conf 001221000--2353112101224653125778898888763255421223456641367--------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCCCCCCHHCCCEE
Q ss_conf 26774678876655677764344332211359579994388771232123433981------454036776700115203
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDTNSNPDLVDYVI 201 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDTn~dp~~idypI 201 (278)
....++ . -.....|++||+.+-.--.-+++.++.+|+. |||+-|+.- -+....||
T Consensus 64 --------~~~~~~------~----~~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~iP~di~ii~fd~~~~-~~~~~p~i 124 (130)
T 3k9c_A 64 --------AEGXHT------L----LEXPTPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYDDSRL-ARIPHVQX 124 (130)
T ss_dssp --------HHHHHH------H----HTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTT-TTCTTTCC
T ss_pred --------HHHHHH------H----HHCCCCCCHHHCCCHHHCCCCEEECCCCCCEEEECCCCCCCCCHHH-HHCCCCCC
T ss_conf --------889999------8----7503575133214102114420000146844552222456567177-86048981
Q ss_pred E
Q ss_conf 2
Q gi|254780779|r 202 P 202 (278)
Q Consensus 202 P 202 (278)
.
T Consensus 125 t 125 (130)
T 3k9c_A 125 T 125 (130)
T ss_dssp E
T ss_pred E
T ss_conf 6
No 265
>>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis} (A:1-67,A:171-346)
Probab=21.60 E-value=55 Score=14.00 Aligned_cols=57 Identities=25% Similarity=0.421 Sum_probs=36.8
Q ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC-CCE-----------ECCCCC--CCCCCCCHHHHHHHH
Q ss_conf 99999986107881699607823579999998633-983-----------142334--587323426665556
Q gi|254780779|r 55 ALQVISDTVARGGRILFVATKSQASDCVMEAAKRS-AQY-----------CVNSKW--LGGMMTNWKTVSQSI 113 (278)
Q Consensus 55 A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~-~~~-----------yV~~RW--lGG~LTN~~ti~~si 113 (278)
++..|...-++||+|.-|||-- -+.++..+... |.. |--.+| .-|+||||..=+.++
T Consensus 136 ta~~In~ak~~g~RiiAVGTT~--~RaLEsa~~~~~g~~~~~~G~T~lfI~Pgy~f~vvD~LiTNFH~P~Stl 206 (243)
T 1yy3_A 136 TAAALNKVRENGGRIISVGTTS--TRTLETIAGEHDGQFKASSGWTSIFIYPGYEFKAIDGMITNFHLPKSSL 206 (243)
T ss_dssp HHHHHHHHHHTTCCEEEECTTT--HHHHHHHHHTTTSCCCCEEEEECCCCCTTCCCSSCSEEEEECCCTTSSH
T ss_pred HHHHHHHHHHCCCCEEEEEHHH--HHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCHH
T ss_conf 9999999997499199970368--9999999862499606788631969779897768087653672770299
No 266
>>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} (A:1-19,A:92-232)
Probab=21.51 E-value=56 Score=13.99 Aligned_cols=121 Identities=10% Similarity=0.135 Sum_probs=57.7
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCE-ECCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 753899999999999999986107881699607823579999998633983-1423345873234266655567789988
Q gi|254780779|r 42 IIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQY-CVNSKWLGGMMTNWKTVSQSIQKLRDLE 120 (278)
Q Consensus 42 IIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~-yV~~RWlGG~LTN~~ti~~si~~l~~l~ 120 (278)
++|....+....-+..+++.+.++|-.+-.|..... . .+.......|.. |+.....+-.-..++
T Consensus 15 ~~~~~~~~~~~pg~~e~L~~L~~~gi~i~IiTn~~~-~-~~~~~l~~~gl~~~f~~~~~~~~~~~~k------------- 79 (160)
T 1zrn_A 15 LFDVHLRLAPFSEVPDSLRELKRRGLKLAILSNGSP-Q-SIDAVVSHAGLRDGFDHLLSVDPVQVYK------------- 79 (160)
T ss_dssp TEETHGGCEECTTHHHHHHHHHHTTCEEEEEESSCH-H-HHHHHHHHTTCGGGCSEEEESGGGTCCT-------------
T ss_pred CEECHCCCCCCCCCHHHHHHHHHCCCEEEEECCCHH-H-HHHHHHHHCCCCCCEEEEECCCCCCHHH-------------
T ss_conf 184890355432027899999854984887333378-9-9999998357661112551132000000-------------
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC-CCCCCHHHHHHHHCCCEEEEECCCCCCCH----
Q ss_conf 7630121267746788766556777643443322113595799943-88771232123433981454036776700----
Q gi|254780779|r 121 ELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVD-TNREKLAIQEARRLRIPIVAVVDTNSNPD---- 195 (278)
Q Consensus 121 ~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d-~~~e~~Av~EA~kl~IPvIaivDTn~dp~---- 195 (278)
++.+.... -++.+.--|+-+++++ ... -+..|+..||++|.+........
T Consensus 80 ----------p~~~~~~~------------~~~~~~~~~~~~i~VGD~~~---Di~~A~~aGi~~i~v~~~~~~~~~~~~ 134 (160)
T 1zrn_A 80 ----------PDNRVYEL------------AEQALGLDRSAILFVASNAW---DATGARYFGFPTCWINRTGNVFEEMGQ 134 (160)
T ss_dssp ----------TSHHHHHH------------HHHHHTSCGGGEEEEESCHH---HHHHHHHHTCCEEEECTTCCCCCSSSC
T ss_pred ----------HHHHHHHH------------HHHHHHCCCCEEEEEECCHH---HHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf ----------57888999------------99986025524899824787---799999869969998079987632258
Q ss_pred HCCCEEE
Q ss_conf 1152032
Q gi|254780779|r 196 LVDYVIP 202 (278)
Q Consensus 196 ~idypIP 202 (278)
.-||.++
T Consensus 135 ~~d~~v~ 141 (160)
T 1zrn_A 135 TPDWEVT 141 (160)
T ss_dssp CCSEEES
T ss_pred CCCEEEC
T ss_conf 9999989
No 267
>>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} (A:1-153)
Probab=21.39 E-value=56 Score=13.97 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=14.8
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 67538999999999999999861078816996078235
Q gi|254780779|r 41 HIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQA 78 (278)
Q Consensus 41 hIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~ 78 (278)
-|+-+-|+...++--+..+......||.|+++|-|+..
T Consensus 80 vlv~lPKsk~~~~~~L~~l~~~l~~g~~i~~~G~~k~G 117 (153)
T 2pjd_A 80 LIYYWPKNKPEAQFQLXNLLSLLPVGTDIFVVGENRSG 117 (153)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTSCTTCEEEEEEEGGGT
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 99986887899999999999747999779999635506
No 268
>>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} (D:189-320)
Probab=21.14 E-value=57 Score=13.94 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=66.2
Q ss_pred HHCCCCE-EEEEECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 6107881-6996078---23579999998633983142334587323426665556778998876301212677467887
Q gi|254780779|r 62 TVARGGR-ILFVATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLN 137 (278)
Q Consensus 62 i~~~gg~-ILFVgTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~ 137 (278)
+..+.++ ++++|.. ..+.+.+.++|+++|.|.++..=-.|.+-.
T Consensus 9 ~l~~AkrPvii~G~g~~~~~~~~~i~~lae~~g~pv~~t~~~kg~~~~-------------------------------- 56 (132)
T 1o97_D 9 IDITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWL-------------------------------- 56 (132)
T ss_dssp CCCSCSSEEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSS--------------------------------
T ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEECHHHHHCCCC--------------------------------
T ss_conf 666666448981676677004789999999849833225868867999--------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCC---HHCCCEEEECCCCHHHHHHH
Q ss_conf 665567776434433221135957999438877123212343398145403677670---01152032157726899999
Q gi|254780779|r 138 IERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNP---DLVDYVIPGNDDSSRSIALF 214 (278)
Q Consensus 138 ~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp---~~idypIP~NDds~~si~l~ 214 (278)
-...++|..-..-.-+|++++++..-... ..--..-+-++|.+ |.|-+. ...|++|-| |...++.-+
T Consensus 57 ------~hp~~~G~~g~~~~~aDlil~iG~~~~~~-~~~~~~~~~~ii~I-d~d~~~~~~~~~~~~i~~--d~~~~l~~L 126 (132)
T 1o97_D 57 ------PKSRQVGQSGKVVGSCKLYVAMGISGSIQ-HMAGMKHVPTIIAV-NTDPGASIFTIAKYGIVA--DIFDIEEEL 126 (132)
T ss_dssp ------CGGGBBSTTSBCCTTCSEEEEESCCCCHH-HHHHHTTCSEEEEE-CSCTTCGGGGTCSEEECS--CHHHHHHHH
T ss_pred ------CHHHEEECCCCEECCCCEEEEEECCCHHH-HHHHHCCCCEEEEE-ECCCCCCCHHHCCEEEEC--CHHHHHHHH
T ss_conf ------87886811183513874899984047388-78760459889999-489999851017988875--099999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780779|r 215 CD 216 (278)
Q Consensus 215 ~~ 216 (278)
..
T Consensus 127 ~~ 128 (132)
T 1o97_D 127 KA 128 (132)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 269
>>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-126)
Probab=21.01 E-value=38 Score=15.05 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=32.6
Q ss_pred HHHHHHHHCCCCCEEEEECC-CCCCHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 34433221135957999438-87712321234339814540367767
Q gi|254780779|r 148 ALDGIRDMGGLPDLMFVVDT-NREKLAIQEARRLRIPIVAVVDTNSN 193 (278)
Q Consensus 148 ~lgGi~~m~~lP~~iiv~d~-~~e~~Av~EA~kl~IPvIaivDTn~d 193 (278)
.+.-+.++..-||++++.-| ..-.-++.||..+||+.+=+.-...+
T Consensus 54 ~y~sl~el~~~~D~v~i~~p~~~~~~~v~e~~~~gi~~ii~~~~g~~ 100 (126)
T 2csu_A 54 AYKSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFG 100 (126)
T ss_dssp CBSSTTSCSSCCSEEEECSCHHHHHHHHHHHHHHTCCEEEECCCSST
T ss_pred CCCCHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 76998886999898999977899899999999849988997167766
No 270
>>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:1-101,A:231-280)
Probab=20.79 E-value=58 Score=13.89 Aligned_cols=43 Identities=12% Similarity=0.038 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEEC
Q ss_conf 359579994388771232123433981454036776700115203215
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGN 204 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~N 204 (278)
..+|.+|+..... -.++.+.+||+|.+- ...+-..+++.++-|
T Consensus 59 ~~VDGIIi~~~~~----~~~L~~~~IPiV~Id-r~~~~~~~~~V~~DN 101 (151)
T 3gyb_A 59 XRPDGIIIAQDIP----DFTVPDSLPPFVIAG-TRITQASTHDSVAND 101 (151)
T ss_dssp TCCSEEEEESCC------------CCCEEEES-CCCSSSCSTTEEEEC
T ss_pred HCCCEEEECCCCH----HHHHHCCCCCEEEEC-CCCCCCCCCCCCCHH
T ss_conf 1985355125301----266641478626523-446887665532114
No 271
>>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepressor, transcription repressor; HET: NAD; 1.95A {Homo sapiens} (A:1-116,A:312-347)
Probab=20.77 E-value=58 Score=13.89 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=26.2
Q ss_pred HCCCCC--EEEEECCCCCCHHHHHHHHCCCEEEEECC
Q ss_conf 113595--79994388771232123433981454036
Q gi|254780779|r 155 MGGLPD--LMFVVDTNREKLAIQEARRLRIPIVAVVD 189 (278)
Q Consensus 155 m~~lP~--~iiv~d~~~e~~Av~EA~kl~IPvIaivD 189 (278)
+.++|. +|.......+++-+..|++.||||...-+
T Consensus 80 L~~~p~LK~I~~~gvG~DnVDl~aa~krGI~V~NtpG 116 (152)
T 1mx3_A 80 LEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPA 116 (152)
T ss_dssp HTTCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCS
T ss_pred HHCCCCCCEEEECCEECCCCCHHHHHHCCCEEEECCC
T ss_conf 9539985179999873251359989868999996998
No 272
>>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A (A:49-242)
Probab=20.64 E-value=58 Score=13.87 Aligned_cols=100 Identities=13% Similarity=0.197 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHH----HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999998610788169960782357----99999986339831423345873234266655567789988763012
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATKSQAS----DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKE 126 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk~~~~----~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~ 126 (278)
.+.++.+.+.+...++.+|++++-...-. .++.....+.|.+ +... +++-++...
T Consensus 9 ~m~~~~~~l~~~l~~~~~i~I~~H~d~Dgda~~s~l~~~l~~~~~~-~~~~-~~~~~~~~~------------------- 67 (194)
T 2zxr_A 9 GLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGAD-VHPF-IPHRLEEGY------------------- 67 (194)
T ss_dssp THHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCE-EEEC-CC--------------------------
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC-EEEE-CCCCCCCCC-------------------
T ss_conf 8999999999999769979999605850779999999999988997-6998-778665688-------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHCCCEEEEECCCC
Q ss_conf 1267746788766556777643443322113595799943887-7123212343398145403677
Q gi|254780779|r 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNR-EKLAIQEARRLRIPIVAVVDTN 191 (278)
Q Consensus 127 ~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~-e~~Av~EA~kl~IPvIaivDTn 191 (278)
++. ..-+..+..-++++|++|... +.....++...++++|-| |-.
T Consensus 68 --~~~-----------------~~~~~~~~~~~d~vi~vD~~~~~~~~~~~~~~~~~~viiI-DHH 113 (194)
T 2zxr_A 68 --GVL-----------------MERVPEHLEASDLFLTVDCGITNHAELRELLENGVEVIVT-DHH 113 (194)
T ss_dssp --------------------------------CCEEEESCCC--------------CEEEEE-CCC
T ss_pred --CCC-----------------HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCEEEEE-CCC
T ss_conf --879-----------------9999998608998999748833489999898679989994-979
No 273
>>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} (A:1-76,A:174-347)
Probab=20.39 E-value=59 Score=13.84 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC---------CCE-ECCCCC--CCCCCCCHHHHHHHH
Q ss_conf 99999999999999986107881699607823579999998633---------983-142334--587323426665556
Q gi|254780779|r 46 SQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRS---------AQY-CVNSKW--LGGMMTNWKTVSQSI 113 (278)
Q Consensus 46 ~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~---------~~~-yV~~RW--lGG~LTN~~ti~~si 113 (278)
+.|+..+.+ .-.+||+|+-|||-- -+.++..+..- +.| |--.+| .-|+||||..=+.++
T Consensus 143 ~~ta~~i~~-------ak~~g~riiAVGTT~--~RaLEsa~~~g~~~~~~G~T~lfI~Pgy~fkvvd~LiTNFH~P~STL 213 (250)
T 1vky_A 143 KETVRKLRE-------TRERGNRIVAVGTTT--VRTLETIARLPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTL 213 (250)
T ss_dssp HHHHHHHHH-------HHHHTCCEEEESHHH--HHHHHHHTTSCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHH
T ss_pred HHHHHHHHH-------HHHCCCCEEEEEHHH--HHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEECCCEECCCCCCCHH
T ss_conf 999999999-------997199589984589--99999998742577767752469899998718186554683770399
No 274
>>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} (A:39-143)
Probab=20.36 E-value=37 Score=15.11 Aligned_cols=40 Identities=10% Similarity=-0.060 Sum_probs=22.9
Q ss_pred CCEEEEECCCCC-CH-HHHHHHHCCCEEEEECCCCCCCHHCC
Q ss_conf 957999438877-12-32123433981454036776700115
Q gi|254780779|r 159 PDLMFVVDTNRE-KL-AIQEARRLRIPIVAVVDTNSNPDLVD 198 (278)
Q Consensus 159 P~~iiv~d~~~e-~~-Av~EA~kl~IPvIaivDTn~dp~~id 198 (278)
|...||.-...+ -. .-.=|..+|||++-+++.+++|..++
T Consensus 23 ~~~~iv~~SsGN~g~a~A~~a~~~G~~~~ivvp~~~~~~k~~ 64 (105)
T 1y7l_A 23 KGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKR 64 (105)
T ss_dssp TTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHH
T ss_conf 995577425787178889998641455411101234577776
No 275
>>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Ralstonia solanacearum} (A:1-107,A:303-352)
Probab=20.28 E-value=59 Score=13.84 Aligned_cols=60 Identities=10% Similarity=0.268 Sum_probs=39.1
Q ss_pred HCCCCCEEEEE------CCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHH---HHH
Q ss_conf 11359579994------388771232123433981454036776700115203215772689999999999999---999
Q gi|254780779|r 155 MGGLPDLMFVV------DTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAA---IDG 225 (278)
Q Consensus 155 m~~lP~~iiv~------d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai---~~g 225 (278)
+..+|++-+|. .+..|++-+..|.+.||+|. |+. +==-+..|-+.+.....+-| ++|
T Consensus 66 l~~~p~LK~I~~~g~~~stG~D~IDi~aA~e~GI~V~-----NvP---------gy~~~~e~~~~~~~~~~~Ni~~~~~G 131 (157)
T 3gg9_A 66 LDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVL-----EGK---------GSYVERESYEMYFGIAFQNILDILQG 131 (157)
T ss_dssp HTTCTTCCEEEESSCCCCSSSCSBCHHHHHHHTCEEE-----CCC---------CCTCBHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCEEEECCCCCCCCCCCCCHHHHHHCCEEEE-----CCC---------CCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9627104201441421455766474999951835210-----033---------34567999999999999999999869
Q ss_pred HHH
Q ss_conf 997
Q gi|254780779|r 226 IAR 228 (278)
Q Consensus 226 ~~~ 228 (278)
...
T Consensus 132 ~p~ 134 (157)
T 3gg9_A 132 NVD 134 (157)
T ss_dssp CCT
T ss_pred CCC
T ss_conf 998
No 276
>>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} (A:1-123,A:263-323)
Probab=20.20 E-value=59 Score=13.81 Aligned_cols=31 Identities=13% Similarity=-0.038 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCCCHH-HHHHHHCCCEEEEE
Q ss_conf 35957999438877123-21234339814540
Q gi|254780779|r 157 GLPDLMFVVDTNREKLA-IQEARRLRIPIVAV 187 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~A-v~EA~kl~IPvIai 187 (278)
.-||+|+|.-|...+.. +.+|-+.|+||+.=
T Consensus 62 ~~iDaV~I~tp~~~H~~ia~~aL~aGkhVlvE 93 (184)
T 1xea_A 62 YGVDAVXIHAATDVHSTLAAFFLHLGIPTFVD 93 (184)
T ss_dssp GCCSEEEECSCGGGHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHC
T ss_conf 89999996034321122332112322133303
No 277
>>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A (A:)
Probab=20.19 E-value=49 Score=14.33 Aligned_cols=53 Identities=23% Similarity=0.177 Sum_probs=33.8
Q ss_pred CHHHHHHHHCCCEE-EEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 12321234339814-540367767001152032157726899999999999999999
Q gi|254780779|r 171 KLAIQEARRLRIPI-VAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGI 226 (278)
Q Consensus 171 ~~Av~EA~kl~IPv-IaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~ 226 (278)
..|+.+|...|.|+ |++||.+.++- +.--.++-+..|+.+..+.--.+..-+.
T Consensus 75 ~aa~~~A~~~g~~v~IaVvD~~G~~i---~~~rmdga~~~s~~~a~~KA~Ta~~~~~ 128 (192)
T 3fpw_A 75 RAAVEAAEKDGRHVSVAVVDRNGNTL---VTLRGDGAGPQSYESAERKAFTAVSWNA 128 (192)
T ss_dssp HHHHHHHHHTTCCCEEEEEETTSCEE---EEEECTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCEE---EEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999849947999997999999---9995489974327999988898985189
No 278
>>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, protein structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} (A:221-284)
Probab=20.06 E-value=21 Score=16.74 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=26.3
Q ss_pred CHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEE
Q ss_conf 123212343398145403677670011520321
Q gi|254780779|r 171 KLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPG 203 (278)
Q Consensus 171 ~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ 203 (278)
+.+-.||++|||++=.+-.=|.--+.||-.+|-
T Consensus 25 e~~~eEc~~LGI~~~~L~~Fnv~~D~id~ilP~ 57 (64)
T 1njr_A 25 ESCKIECQKLGIDIEXLKSFNVEKDAIELLIPR 57 (64)
T ss_dssp HHHHHHHHHHTCCHHHHHTCCTTTSCGGGTSCT
T ss_pred HHHHHHHHHHCCCHHHHCCCCCCCCHHHHHCCC
T ss_conf 999999987176788833567441558773652
No 279
>>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:111-244)
Probab=20.02 E-value=60 Score=13.79 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=25.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCE------EEEEC
Q ss_conf 359579994388771232123433981------45403
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIP------IVAVV 188 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaiv 188 (278)
..|++||+.+-..=..+++.++++|+. |+++.
T Consensus 77 ~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~ii~f~ 114 (134)
T 3g85_A 77 NTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIG 114 (134)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 65422442022233015677640113588446676326
Done!