HHsearch results for GI: 254780779 and protein with PDBid: 1vi6_A

>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=100.00  E-value=0  Score=449.57  Aligned_cols=176  Identities=26%  Similarity=0.352  Sum_probs=166.1

Q ss_pred             CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf             245899986088607547765788562102001-8816753899999999999999986107881699607823579999
Q gi|254780779|r    5 QFTIRQLLESGVQFGHRNFLWNPKMERYIFCER-NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVM   83 (278)
Q Consensus         5 ~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~r-ngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~   83 (278)
                      -|++++||+||+||||++++||  |+|||||.| ||+|||||++|+++|++|++|++.+  +|++||||||+++++.+|+
T Consensus        10 lv~~~~ll~agvH~G~~~~~~~--M~~yIyg~R~nGi~IIdL~kT~~~L~~A~~fl~~~--~~~~ILfVgtk~~~~~~v~   85 (208)
T 1vi6_A           10 LVPPDDYLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY--EPSKILLVAARQYAHKPVQ   85 (208)
T ss_dssp             SSCHHHHHHHTTTBCCSCCCTT--TGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS--CGGGEEEEECSGGGHHHHH
T ss_pred             CCCHHHHHHHCEEECCCCCCCC--CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHH
T ss_conf             4249999973924787848777--72204151689758967999999999999999855--6772799834588999999


Q ss_pred             HHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             99863398314233458732342666555677899887630121267746788766556777643443322113595799
Q gi|254780779|r   84 EAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMF  163 (278)
Q Consensus        84 ~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ii  163 (278)
                      ++|++||++||++||+|||||||.+                                             .+.+.||++|
T Consensus        86 ~~A~~~g~~yv~~rWlgG~LTN~~~---------------------------------------------~~~~~P~~vi  120 (208)
T 1vi6_A           86 MFSKVVGSDYIVGRFIPGTLTNPML---------------------------------------------SEYREPEVVF  120 (208)
T ss_dssp             HHHHHHCCEEEESSCCTTTTTCTTS---------------------------------------------TTCCCCSEEE
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHH---------------------------------------------HHCCCCCCCE
T ss_conf             9998646875446456775446677---------------------------------------------7414676607


Q ss_pred             EECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             943887712321234339814540367767001152032157726899999999999999999974
Q gi|254780779|r  164 VVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQ  229 (278)
Q Consensus       164 v~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~  229 (278)
                      |+||..|++||+||.++||||||||||||||+.|||||||||||++||.|++++|++||++|+++.
T Consensus       121 v~dp~~d~~ai~Ea~~l~IP~I~ivDTn~~p~~vdypIP~Ndds~~Si~li~~lL~~ai~~~k~~~  186 (208)
T 1vi6_A          121 VNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQD  186 (208)
T ss_dssp             ESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             EECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             776775379999999809965887249998111887886888638799999999999999981987