HHsearch results for GI: 254780779 and protein with PDBid: 2zkq_b
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=0 Score=470.46 Aligned_cols=183 Identities=20% Similarity=0.322 Sum_probs=170.7
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 9866245899986088607547765788562102001-881675389999999999999998610788169960782357
Q gi|254780779|r 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCER-NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQAS 79 (278)
Q Consensus 1 m~m~~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~r-ngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~ 79 (278)
|+|.+-++++||+||+||||+ +|||+|+|||||.| ||+|||||+||+.+|+.|++|+..+ .+||.|||||||++++
T Consensus 8 ~~~ke~di~~lL~agvH~Gh~--~~np~M~~YI~~~R~nGi~IIdL~kT~~~L~~A~~~i~~i-~~~~~ilfV~tk~~~~ 84 (295)
T 2zkq_b 8 LQMKEEDVLKFLAAGTHLGGT--NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAI-ENPADVSVISSRNTGQ 84 (295)
T ss_dssp -----CCHHHHHHHTTTBCCS--CCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHS-SCGGGEEEEECSHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCHHHH
T ss_conf 376889999999719213867--7797761404254689838964999999999999999998-5899379998964699
Q ss_pred HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999986339831423345873234266655567789988763012126774678876655677764344332211359
Q gi|254780779|r 80 DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLP 159 (278)
Q Consensus 80 ~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP 159 (278)
+.|.++|.+||++||++||+|||||||.+ .|.+.|
T Consensus 85 ~~v~k~A~~~g~~~v~~Rw~gG~lTN~i~---------------------------------------------~~~~~P 119 (295)
T 2zkq_b 85 RAVLKFAAATGATPIAGRFTPGTFTNQIQ---------------------------------------------AAFREP 119 (295)
T ss_dssp HHHHHHHHHHCCEEEESSCCCC-CCCTTC---------------------------------------------SSCCCC
T ss_pred HHHHHHHHHHCCEEEECCCCCCCCCCHHH---------------------------------------------HCCCCC
T ss_conf 99999999969973303214886552234---------------------------------------------224578
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 579994388771232123433981454036776700115203215772689999999999999999997443
Q gi|254780779|r 160 DLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHS 231 (278)
Q Consensus 160 ~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~ 231 (278)
+++||+||..|++||+||.++||||||||||||||++|||||||||||++||.||+++|+++|+++++....
T Consensus 120 ~lliv~dp~~d~~av~Ea~~~~IPviai~DTn~~p~~vd~~IP~Ndds~~Si~l~~~~la~~vl~~~g~~~~ 191 (295)
T 2zkq_b 120 RLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 191 (295)
T ss_dssp SEEEESCTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEEEESCSSCHHHHHHHHHHHHHHHHHCCSSSSC
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 704776666434889999874999899815899964123577478835879999999999999998287554