Query gi|254780779|ref|YP_003065192.1| 30S ribosomal protein S2 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 278
No_of_seqs 150 out of 1435
Neff 5.3
Searched_HMMs 23785
Date Mon May 30 13:10:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780779.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqe_B 30S ribosomal protein S 100.0 0 0 599.8 13.3 228 3-230 1-230 (256)
2 3bbn_B Ribosomal protein S2; s 100.0 0 0 570.2 19.0 226 4-229 2-228 (231)
3 3ofo_B 30S ribosomal protein S 100.0 0 0 565.8 4.8 216 11-226 1-217 (218)
4 3bch_A 40S ribosomal protein S 100.0 0 0 473.4 15.7 183 1-231 41-224 (253)
5 2zkq_b 40S ribosomal protein S 100.0 0 0 470.5 15.1 183 1-231 8-191 (295)
6 1vi6_A 30S ribosomal protein S 100.0 0 0 449.6 16.5 176 5-229 10-186 (208)
7 3jyv_B 40S ribosomal protein S 100.0 0 0 449.8 12.5 180 3-230 1-181 (193)
8 1tk9_A Phosphoheptose isomeras 97.7 0.0018 7.7E-08 41.9 13.0 149 49-222 25-184 (188)
9 2i2w_A Phosphoheptose isomeras 97.4 0.00067 2.8E-08 44.8 8.3 149 49-223 47-207 (212)
10 2xbl_A Phosphoheptose isomeras 96.7 0.039 1.6E-06 33.4 14.1 153 45-222 27-190 (198)
11 2yva_A DNAA initiator-associat 96.3 0.067 2.8E-06 31.8 16.3 148 49-222 24-186 (196)
12 1x92_A APC5045, phosphoheptose 95.9 0.11 4.5E-06 30.5 14.4 148 50-224 29-192 (199)
13 1nri_A Hypothetical protein HI 93.2 0.49 2.1E-05 26.3 8.1 156 45-224 50-223 (306)
14 3dzc_A UDP-N-acetylglucosamine 91.7 0.35 1.5E-05 27.2 5.8 30 159-188 112-142 (396)
15 3cs3_A Sugar-binding transcrip 91.2 0.65 2.7E-05 25.5 6.7 34 157-190 176-215 (277)
16 3gyb_A Transcriptional regulat 88.8 1.3 5.7E-05 23.4 7.4 62 157-218 175-246 (280)
17 3ksm_A ABC-type sugar transpor 88.7 1.4 5.7E-05 23.4 6.9 29 159-187 188-220 (276)
18 1m3s_A Hypothetical protein YC 87.3 1.6 6.9E-05 22.9 6.8 44 159-202 80-129 (186)
19 3bbl_A Regulatory protein of L 87.0 0.75 3.2E-05 25.1 4.5 34 157-190 187-226 (287)
20 1vjt_A Alpha-glucosidase; TM07 84.1 2.4 1E-04 21.8 7.9 142 40-203 46-219 (483)
21 3cvj_A Putative phosphoheptose 84.0 2.4 0.0001 21.8 13.0 114 50-189 26-143 (243)
22 3gv0_A Transcriptional regulat 83.9 2.4 0.0001 21.8 5.9 63 156-218 186-258 (288)
23 2x7x_A Sensor protein; transfe 83.6 2 8.5E-05 22.3 5.4 60 159-218 189-260 (325)
24 1vim_A Hypothetical protein AF 83.4 2.5 0.00011 21.7 12.2 47 159-205 90-144 (200)
25 2rgy_A Transcriptional regulat 82.2 2.4 0.0001 21.8 5.3 59 157-215 188-256 (290)
26 3l6u_A ABC-type sugar transpor 81.8 2.7 0.00011 21.5 5.5 26 70-95 69-94 (293)
27 2h0a_A TTHA0807, transcription 80.1 2.7 0.00011 21.5 5.0 35 156-190 178-218 (276)
28 3clk_A Transcription regulator 79.3 1.7 7.1E-05 22.8 3.8 60 158-217 185-254 (290)
29 2fvy_A D-galactose-binding per 79.3 3.4 0.00014 20.9 5.3 37 159-198 204-243 (309)
30 3d02_A Putative LACI-type tran 79.2 1 4.3E-05 24.2 2.6 31 159-189 190-224 (303)
31 3fj1_A Putative phosphosugar i 78.5 3.7 0.00016 20.6 10.7 57 159-215 92-157 (344)
32 1f0k_A MURG, UDP-N-acetylgluco 78.5 3.7 0.00016 20.6 9.8 29 159-187 97-125 (364)
33 2zxr_A Single-stranded DNA spe 77.5 4 0.00017 20.4 7.4 109 24-191 45-161 (666)
34 3bgw_A DNAB-like replicative h 77.2 4 0.00017 20.4 8.5 175 15-206 175-375 (444)
35 3gbv_A Putative LACI-family tr 76.6 4.2 0.00018 20.3 9.7 26 69-94 73-98 (304)
36 1v4v_A UDP-N-acetylglucosamine 75.1 3.1 0.00013 21.1 4.1 29 170-198 282-310 (376)
37 3g1w_A Sugar ABC transporter; 74.2 4.8 0.0002 19.9 6.2 38 159-199 188-229 (305)
38 1tjy_A Sugar transport protein 73.8 4.9 0.00021 19.8 6.8 29 159-187 190-221 (316)
39 3hcw_A Maltose operon transcri 73.4 5 0.00021 19.7 7.1 62 157-218 191-262 (295)
40 3jy6_A Transcriptional regulat 72.2 5.4 0.00023 19.6 6.5 35 156-190 179-219 (276)
41 3kke_A LACI family transcripti 71.5 5.1 0.00022 19.7 4.5 61 157-217 196-266 (303)
42 3e3m_A Transcriptional regulat 70.8 5.8 0.00024 19.4 7.7 29 159-187 127-155 (355)
43 1l7b_A DNA ligase; BRCT, autos 70.7 4.4 0.00019 20.1 4.1 30 156-187 42-71 (92)
44 3huu_A Transcription regulator 70.0 4.3 0.00018 20.2 3.9 65 154-218 198-272 (305)
45 3oj0_A Glutr, glutamyl-tRNA re 69.3 6.2 0.00026 19.2 7.0 32 54-87 11-42 (144)
46 3l5k_A Protein GS1, haloacid d 67.8 6.7 0.00028 19.0 4.5 48 152-202 181-234 (250)
47 3m9w_A D-xylose-binding peripl 67.5 6.7 0.00028 18.9 6.5 48 157-204 187-235 (313)
48 2fn9_A Ribose ABC transporter, 65.5 7.4 0.00031 18.7 8.4 33 158-190 191-226 (290)
49 2h3h_A Sugar ABC transporter, 64.8 7.6 0.00032 18.6 4.9 32 159-190 183-218 (313)
50 3fkj_A Putative phosphosugar i 64.8 7.6 0.00032 18.6 8.7 46 159-204 90-141 (347)
51 2ebu_A Replication factor C su 64.4 7.7 0.00033 18.5 6.2 32 155-187 57-88 (112)
52 3g85_A Transcriptional regulat 62.6 8.3 0.00035 18.3 4.8 29 155-183 185-213 (289)
53 2f9i_A Acetyl-coenzyme A carbo 62.2 2.2 9.1E-05 22.1 1.1 135 40-192 12-171 (327)
54 3bil_A Probable LACI-family tr 62.1 8.5 0.00036 18.3 4.5 37 158-194 122-158 (348)
55 2rjo_A Twin-arginine transloca 61.7 8.2 0.00034 18.4 4.0 42 159-200 198-240 (332)
56 3k4h_A Putative transcriptiona 61.5 8.7 0.00037 18.2 4.7 63 156-218 190-262 (292)
57 3kjx_A Transcriptional regulat 61.4 8.8 0.00037 18.2 9.2 59 158-220 124-182 (344)
58 2f9y_A Acetyl-COA carboxylase, 60.8 2.4 9.9E-05 21.9 1.1 138 40-192 23-185 (339)
59 2cok_A Poly [ADP-ribose] polym 60.1 4.4 0.00019 20.1 2.4 19 168-186 58-76 (113)
60 8abp_A L-arabinose-binding pro 59.2 9.5 0.0004 18.0 5.3 39 57-95 48-87 (306)
61 3hgt_A HDA1 complex subunit 3; 58.8 9.7 0.00041 17.9 6.1 129 47-203 106-248 (328)
62 1s6y_A 6-phospho-beta-glucosid 58.3 9.9 0.00041 17.9 7.9 48 158-205 143-205 (450)
63 2cly_C ATP synthase coupling f 57.3 8.6 0.00036 18.3 3.5 50 113-163 13-64 (77)
64 3l49_A ABC sugar (ribose) tran 56.7 10 0.00044 17.7 9.1 29 159-187 192-223 (291)
65 3c65_A Uvrabc system protein C 56.0 6 0.00025 19.2 2.5 35 156-190 80-118 (226)
66 1im5_A 180AA long hypothetical 55.9 7.5 0.00032 18.6 3.0 36 159-194 120-158 (180)
67 3beo_A UDP-N-acetylglucosamine 55.5 11 0.00046 17.6 4.0 20 171-190 291-310 (375)
68 3g68_A Putative phosphosugar i 54.6 11 0.00048 17.5 5.9 46 159-204 83-134 (352)
69 1jeo_A MJ1247, hypothetical pr 53.6 12 0.00049 17.4 11.4 46 159-204 83-133 (180)
70 1gud_A ALBP, D-allose-binding 53.5 8.6 0.00036 18.2 3.0 41 159-199 194-235 (288)
71 3ga2_A Endonuclease V; alpha-b 52.8 12 0.00051 17.3 4.4 37 154-190 105-146 (246)
72 2o20_A Catabolite control prot 52.0 12 0.00052 17.2 5.9 60 157-220 118-177 (332)
73 2bfw_A GLGA glycogen synthase; 51.6 13 0.00053 17.2 7.8 46 159-205 116-166 (200)
74 2r79_A Periplasmic binding pro 51.4 13 0.00054 17.1 3.9 54 61-119 54-107 (283)
75 3fxa_A SIS domain protein; YP_ 51.4 13 0.00054 17.1 13.3 45 159-203 93-143 (201)
76 2etv_A Iron(III) ABC transport 51.1 13 0.00054 17.1 4.0 28 159-187 97-124 (346)
77 1a9x_B Carbamoyl phosphate syn 50.7 11 0.00046 17.6 3.1 31 158-188 231-268 (379)
78 2vk2_A YTFQ, ABC transporter p 49.5 14 0.00057 17.0 6.4 36 160-195 193-231 (306)
79 2vpi_A GMP synthase; guanine m 48.4 14 0.0006 16.8 7.2 74 66-188 24-103 (218)
80 3k9c_A Transcriptional regulat 47.1 15 0.00062 16.7 5.8 64 156-219 183-256 (289)
81 2nrr_A Uvrabc system protein C 45.8 13 0.00053 17.2 2.8 55 156-212 77-138 (159)
82 2w36_A Endonuclease V; hypoxan 45.5 16 0.00066 16.6 3.8 36 155-190 100-140 (225)
83 3hu5_A Isochorismatase family 45.3 12 0.00049 17.4 2.6 37 159-195 126-165 (204)
84 3md9_A Hemin-binding periplasm 45.3 16 0.00066 16.5 4.3 91 9-119 14-107 (255)
85 3goc_A Endonuclease V; alpha-b 43.9 17 0.0007 16.4 5.5 48 140-190 92-144 (237)
86 3ocu_A Lipoprotein E; hydrolas 43.5 17 0.00071 16.4 3.6 43 54-96 105-149 (262)
87 3ot5_A UDP-N-acetylglucosamine 43.3 17 0.00071 16.3 4.1 24 173-196 312-335 (403)
88 2q6t_A DNAB replication FORK h 42.7 17 0.00073 16.3 10.2 158 31-206 192-378 (444)
89 3iav_A Propionyl-COA carboxyla 41.9 7.3 0.00031 18.7 1.1 44 149-192 323-378 (530)
90 1j4a_A D-LDH, D-lactate dehydr 41.7 18 0.00075 16.2 4.6 112 65-191 145-262 (333)
91 3bh0_A DNAB-like replicative h 41.3 18 0.00076 16.1 9.1 164 30-210 59-250 (315)
92 1pix_A Glutaconyl-COA decarbox 40.9 9.7 0.00041 17.9 1.6 22 171-192 396-417 (587)
93 2gv8_A Monooxygenase; FMO, FAD 40.0 19 0.0008 16.0 3.8 44 63-106 209-252 (447)
94 3gf3_A Glutaconyl-COA decarbox 38.9 11 0.00046 17.6 1.6 21 172-192 399-419 (588)
95 2poc_A D-fructose-6-, isomeras 38.6 20 0.00084 15.9 4.5 46 159-204 98-149 (367)
96 3ff6_A Acetyl-COA carboxylase 38.1 12 0.0005 17.3 1.7 21 172-192 448-468 (760)
97 1wdi_A Hypothetical protein TT 37.9 20 0.00086 15.8 3.0 50 62-113 246-308 (345)
98 2hsg_A Glucose-resistance amyl 37.7 21 0.00087 15.8 5.7 56 159-218 117-172 (332)
99 1o1y_A Conserved hypothetical 37.4 8.2 0.00034 18.4 0.8 29 50-78 77-105 (239)
100 2r7a_A Bacterial heme binding 36.7 21 0.0009 15.7 4.3 53 62-118 55-107 (256)
101 1mug_A Protein (G:T/U specific 36.4 6.7 0.00028 18.9 0.2 31 59-95 2-32 (168)
102 3dfz_A SIRC, precorrin-2 dehyd 36.1 22 0.00092 15.6 6.0 30 64-93 29-58 (223)
103 1x0u_A Hypothetical methylmalo 35.9 10 0.00043 17.8 1.1 43 150-192 317-371 (522)
104 1j2r_A Hypothetical isochorism 35.9 22 0.00093 15.6 3.6 36 159-194 132-170 (199)
105 1a9x_A Carbamoyl phosphate syn 35.6 22 0.00094 15.6 3.3 37 69-109 113-155 (1073)
106 3d03_A Phosphohydrolase; glyce 35.5 22 0.00094 15.6 5.7 26 48-73 24-49 (274)
107 3fpw_A HBPS, extracellular HAE 35.5 13 0.00053 17.2 1.5 52 171-225 75-127 (192)
108 3miz_A Putative transcriptiona 35.2 23 0.00095 15.5 7.0 33 157-189 196-234 (301)
109 3knz_A Putative sugar binding 35.2 23 0.00095 15.5 11.1 47 159-205 98-150 (366)
110 2a3n_A Putative glucosamine-fr 34.7 23 0.00097 15.5 13.3 64 159-222 103-173 (355)
111 2i33_A Acid phosphatase; HAD s 34.3 23 0.00098 15.4 4.1 44 53-96 104-148 (258)
112 3crm_A TRNA delta(2)-isopenten 34.0 18 0.00076 16.2 2.1 31 48-78 76-106 (323)
113 2bpl_A Glucosamine--fructose-6 33.6 24 0.001 15.4 4.3 46 160-205 341-393 (608)
114 2a2l_A Unknown; structural gen 33.6 14 0.00059 16.9 1.5 22 173-194 24-46 (145)
115 1obb_A Maltase, alpha-glucosid 32.9 25 0.001 15.3 6.2 43 159-203 144-200 (480)
116 2w37_A Ornithine carbamoyltran 32.7 25 0.001 15.3 5.6 140 15-195 3-158 (359)
117 1pfk_A Phosphofructokinase; tr 32.6 25 0.001 15.3 5.0 59 159-218 95-154 (320)
118 1n2z_A Vitamin B12 transport p 32.6 25 0.001 15.3 3.2 13 159-171 188-200 (245)
119 1vrg_A Propionyl-COA carboxyla 32.5 13 0.00053 17.2 1.1 42 151-192 323-376 (527)
120 2q8p_A Iron-regulated surface 32.4 18 0.00077 16.1 1.9 49 64-119 58-106 (260)
121 3h75_A Periplasmic sugar-bindi 32.0 25 0.0011 15.2 4.2 29 66-94 62-90 (350)
122 1j5x_A Glucosamine-6-phosphate 32.0 25 0.0011 15.2 4.8 52 159-210 101-160 (342)
123 3fij_A LIN1909 protein; 11172J 31.9 13 0.00054 17.1 1.1 22 54-75 29-50 (254)
124 2bzr_A Propionyl-COA carboxyla 31.6 13 0.00056 17.0 1.1 43 150-192 339-393 (548)
125 1jye_A Lactose operon represso 31.5 26 0.0011 15.2 6.8 34 157-190 237-276 (349)
126 3n6r_B Propionyl-COA carboxyla 31.4 13 0.00056 17.0 1.1 43 150-192 330-384 (531)
127 2ioy_A Periplasmic sugar-bindi 30.8 27 0.0011 15.1 7.6 35 157-191 182-219 (283)
128 2l3f_A Uncharacterized protein 30.7 23 0.00095 15.5 2.2 31 61-97 8-38 (166)
129 1w4x_A Phenylacetone monooxyge 30.5 27 0.0011 15.0 3.6 35 63-97 183-217 (542)
130 3aek_A Light-independent proto 30.5 27 0.0011 15.0 4.7 80 26-109 79-166 (437)
131 1on3_A Methylmalonyl-COA carbo 29.6 15 0.00063 16.7 1.1 43 150-192 318-372 (523)
132 2woo_A ATPase GET3; tail-ancho 29.6 28 0.0012 14.9 3.7 53 6-79 8-60 (329)
133 1vgv_A UDP-N-acetylglucosamine 29.2 28 0.0012 14.9 8.9 37 171-207 291-329 (384)
134 2r85_A PURP protein PF1517; AT 29.1 16 0.00069 16.4 1.2 14 210-223 244-257 (334)
135 3iaa_A CALG2; glycosyltransfer 28.9 29 0.0012 14.9 6.8 31 48-78 30-60 (416)
136 2pgn_A Cyclohexane-1,2-dione h 28.7 29 0.0012 14.8 2.8 51 51-104 194-247 (589)
137 3lyu_A Putative hydrogenase; t 28.3 29 0.0012 14.8 5.8 29 158-186 107-136 (142)
138 1pjq_A CYSG, siroheme synthase 28.2 29 0.0012 14.8 6.3 20 65-84 11-30 (457)
139 2nxw_A Phenyl-3-pyruvate decar 28.1 23 0.00097 15.5 1.8 18 79-96 239-256 (565)
140 1qdl_B Protein (anthranilate s 27.9 30 0.0013 14.8 6.7 17 172-188 68-84 (195)
141 2iya_A OLEI, oleandomycin glyc 27.7 30 0.0013 14.7 9.4 28 50-77 24-51 (424)
142 3ouz_A Biotin carboxylase; str 27.1 31 0.0013 14.7 3.9 54 58-115 95-154 (446)
143 3gwf_A Cyclohexanone monooxyge 27.0 31 0.0013 14.7 3.1 35 63-97 175-209 (540)
144 2pbz_A Hypothetical protein; N 26.9 28 0.0012 15.0 2.1 23 200-222 216-238 (320)
145 3ia7_A CALG4; glycosysltransfe 26.6 31 0.0013 14.6 7.4 14 174-187 310-323 (402)
146 1pa4_A Probable ribosome-bindi 26.1 29 0.0012 14.8 2.1 35 138-172 66-100 (116)
147 2b82_A APHA, class B acid phos 26.1 32 0.0013 14.6 2.6 98 53-190 91-190 (211)
148 2wt9_A Nicotinamidase; hydrola 25.9 26 0.0011 15.1 1.8 34 159-192 167-203 (235)
149 3lqy_A Putative isochorismatas 25.5 33 0.0014 14.5 3.1 36 159-194 113-151 (190)
150 1qv9_A F420-dependent methylen 25.3 33 0.0014 14.5 3.0 34 158-191 64-101 (283)
151 1wyw_A TDG, G/T mismatch-speci 25.3 31 0.0013 14.6 2.1 29 61-95 17-45 (230)
152 2dri_A D-ribose-binding protei 25.2 33 0.0014 14.5 3.8 36 155-190 179-217 (271)
153 1c8b_A Spore protease; novel f 25.2 17 0.00072 16.3 0.8 43 158-205 186-254 (371)
154 3ctp_A Periplasmic binding pro 24.4 34 0.0014 14.4 7.0 24 159-182 232-255 (330)
155 3e61_A Putative transcriptiona 23.8 35 0.0015 14.3 6.5 60 158-217 177-246 (277)
156 2h0r_A Nicotinamidase; NAD+ sa 23.7 36 0.0015 14.3 2.2 33 159-191 154-189 (216)
157 3h5o_A Transcriptional regulat 23.2 36 0.0015 14.2 8.9 32 159-190 119-150 (339)
158 3d8u_A PURR transcriptional re 23.2 36 0.0015 14.2 5.4 62 157-218 180-251 (275)
159 1y81_A Conserved hypothetical 23.0 23 0.00095 15.5 1.0 40 148-187 59-99 (138)
160 2k6g_A Replication factor C su 22.4 38 0.0016 14.1 5.8 31 155-186 67-97 (109)
161 1xww_A Low molecular weight ph 22.4 38 0.0016 14.1 2.5 21 65-85 4-24 (157)
162 1ldd_A APC2WHB, anaphase promo 22.1 33 0.0014 14.5 1.7 24 98-123 12-35 (74)
163 2c2q_A G/U mismatch-specific D 21.9 38 0.0016 14.0 2.0 28 62-95 21-48 (199)
164 1p8a_A Protein tyrosine phosph 21.8 21 0.00087 15.8 0.6 61 159-224 80-141 (146)
165 3ib7_A ICC protein; metallopho 21.7 39 0.0016 14.0 6.3 46 48-93 49-103 (330)
166 3lrx_A Putative hydrogenase; a 21.5 39 0.0016 14.0 5.9 33 159-191 113-146 (158)
167 3mcw_A Putative hydrolase; iso 21.5 39 0.0017 14.0 3.6 37 159-195 113-152 (198)
168 1q6z_A BFD, BFDC, benzoylforma 21.2 32 0.0013 14.6 1.5 20 77-96 215-234 (528)
169 3k8x_A Acetyl-COA carboxylase; 21.0 34 0.0014 14.3 1.6 19 173-191 460-479 (758)
170 2duw_A Putative COA-binding pr 20.9 40 0.0017 13.9 5.4 40 148-187 60-100 (145)
171 2wns_A Orotate phosphoribosylt 20.9 40 0.0017 13.9 3.5 168 1-201 1-179 (205)
172 3e6s_A Ferritin; iron storage, 20.9 40 0.0017 13.9 2.5 109 45-168 43-158 (168)
173 3cf4_A Acetyl-COA decarbonylas 20.8 40 0.0017 13.9 3.8 35 156-190 311-345 (807)
174 2x0k_A Riboflavin biosynthesis 20.7 17 0.0007 16.4 -0.1 75 14-88 25-145 (338)
175 2pz0_A Glycerophosphoryl diest 20.7 13 0.00055 17.1 -0.6 36 22-58 3-38 (252)
176 1i1q_B Anthranilate synthase c 20.5 41 0.0017 13.9 6.3 30 159-188 48-83 (192)
177 1j6u_A UDP-N-acetylmuramate-al 20.5 41 0.0017 13.9 3.1 76 8-91 50-141 (469)
178 3mxq_A Sensor protein; PSI2, M 20.5 41 0.0017 13.8 3.2 49 137-191 16-66 (152)
179 1t9b_A Acetolactate synthase, 20.4 36 0.0015 14.2 1.6 46 50-98 277-326 (677)
180 2qh8_A Uncharacterized protein 20.4 33 0.0014 14.5 1.4 68 154-226 189-261 (302)
No 1
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=100.00 E-value=0 Score=599.81 Aligned_cols=228 Identities=46% Similarity=0.800 Sum_probs=221.2
Q ss_pred CC-CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 66-24589998608860754776578856210200188167538999999999999999861078816996078235799
Q gi|254780779|r 3 LP-QFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDC 81 (278)
Q Consensus 3 m~-~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~ 81 (278)
|| ++|+++||+|||||||++++|||+|+|||||.|||+|||||++|+.+|++|+.|++.++.+||+|||||||+|++.+
T Consensus 1 m~~~~ti~~ll~ag~H~Gh~~~~wnp~m~~yIyg~r~gi~IIdL~kT~~~L~~A~~~i~~i~~~~g~iLfVgTk~~~~~~ 80 (256)
T 2vqe_B 1 MPVEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDI 80 (256)
T ss_dssp -----CCCSTTCSSTTCCCBSSSCCGGGSTTEEEEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTT
T ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
T ss_conf 99747799999719826667685798875612045088168869999999999999999885179869999575999999
Q ss_pred HHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999986339831423345873234266655567789988763-0121267746788766556777643443322113595
Q gi|254780779|r 82 VMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELL-NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPD 160 (278)
Q Consensus 82 i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~-~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~ 160 (278)
|+++|.+||+||||+||+|||||||+||++|+.+|++++... .+.++.|||||.+.+.|++.||+++||||++|.++||
T Consensus 81 v~~~A~~~~~~yvn~RWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~~~~l~Kke~~~~~~~~~kl~~~~~Gi~~m~~~Pd 160 (256)
T 2vqe_B 81 VRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPD 160 (256)
T ss_dssp TTTTTTSSSCCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTGGGCSSCCS
T ss_pred HHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999995993362441287501746665676543577755124520125606888867899999986157522246897
Q ss_pred EEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999438877123212343398145403677670011520321577268999999999999999999744
Q gi|254780779|r 161 LMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQH 230 (278)
Q Consensus 161 ~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~ 230 (278)
+|||+||..|++||+||.+|||||||||||||||++|||||||||||++||+||++.+++||++|+..+.
T Consensus 161 ~v~v~d~~~~~~AI~EA~~l~IPvIaivDTn~~p~~IdypIP~NDds~~sI~li~~~l~~ai~~g~~~~~ 230 (256)
T 2vqe_B 161 AIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVV 230 (256)
T ss_dssp EEEESCTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSCHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7996377500889999998589557761389880005446546886198999999999999999840112
No 2
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=0 Score=570.25 Aligned_cols=226 Identities=38% Similarity=0.629 Sum_probs=219.8
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 62458999860886075477657885621020018816753899999999999999986107881699607823579999
Q gi|254780779|r 4 PQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVM 83 (278)
Q Consensus 4 ~~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~ 83 (278)
-++|+++||+||+||||++++|||+|+|||||.|||+|||||++|+.+|++|+.|+.+++.+||+||||||+++++++|+
T Consensus 2 ~~v~i~~ll~ag~H~Gh~~~~wnp~m~~yI~g~r~gi~IIdl~~T~~~L~~A~~~l~~i~~~~~~iLfVgtk~~~~~~v~ 81 (231)
T 3bbn_B 2 WNINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVA 81 (231)
T ss_dssp CSCSSHHHHHTSSSSCCCSSCCCGGGGGGEEEEETTEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHH
T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
T ss_conf 88889999971884667767479885151115459814885999999999999999999837980599966487999999
Q ss_pred HHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 9986339831423345873234266655567789988763-012126774678876655677764344332211359579
Q gi|254780779|r 84 EAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELL-NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLM 162 (278)
Q Consensus 84 ~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~-~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~i 162 (278)
++|++|++|||++||+|||||||.||++++++|++++... .+.++.|||||.+.+.|++.||+++|+|+++|.++||+|
T Consensus 82 ~~a~~~~~~yv~~rW~gG~LTN~~~i~~~i~~~~~l~~~~~~~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~m~~~Pd~v 161 (231)
T 3bbn_B 82 RAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIV 161 (231)
T ss_dssp HHHHHHTCEECCSSCCSCSSSCHHHHHHHHHHHHHHHHSTTSTTTTTSCHHHHHHHHHHHHHHTTSTTSTTSCCSCCSEE
T ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEE
T ss_conf 99999699031672158865247888667765899988862152311888899887689999987314631031299779
Q ss_pred EEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9943887712321234339814540367767001152032157726899999999999999999974
Q gi|254780779|r 163 FVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQ 229 (278)
Q Consensus 163 iv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~ 229 (278)
||+||..|++||+||.+|||||||||||||||+.|||||||||||++||+|+++.+++||++|++.+
T Consensus 162 iv~d~~~~~~ai~Ea~~l~IPvI~ivDtn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~gk~~~ 228 (231)
T 3bbn_B 162 IIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSY 228 (231)
T ss_dssp EESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEECCCCSSSHHHHHHHHHHHHHHHHHTSSCC
T ss_pred EECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8528632279999999739987887438989775536873788769999999999999999998876
No 3
>3ofo_B 30S ribosomal protein S2; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_B* 2wwl_B 3ofp_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 3kc4_B 3or9_B 3ora_B 2qal_B* 1p87_B 2aw7_B 2avy_B ...
Probab=100.00 E-value=0 Score=565.82 Aligned_cols=216 Identities=51% Similarity=0.874 Sum_probs=211.9
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 98608860754776578856210200188167538999999999999999861078816996078235799999986339
Q gi|254780779|r 11 LLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSA 90 (278)
Q Consensus 11 Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~ 90 (278)
||+|||||||++++|||+|+|||||.|||+|||||++|+.+|++|++|+++++++||+||||||+++++++|+++|++|+
T Consensus 1 ll~ag~H~Gh~~~~wnp~m~~yI~g~rngi~IIdl~~T~~~L~~A~~~i~~~~~~~~~iLfVgt~~~~~~~i~~~a~~~~ 80 (218)
T 3ofo_B 1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCD 80 (218)
T ss_dssp CCCCCSCCCCCCSCCCGGGCTTCCCCCSSSCCCCHHHHTTGGGTHHHHHHHHTTTCCCCCEECCSSSSGGGTSSSTTTSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 96555025777782698630100256499679729999999999999999997379979999776878999999999809
Q ss_pred CEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 83142334587323426665556778998876-30121267746788766556777643443322113595799943887
Q gi|254780779|r 91 QYCVNSKWLGGMMTNWKTVSQSIQKLRDLEEL-LNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNR 169 (278)
Q Consensus 91 ~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~-~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~ 169 (278)
+||||+||+|||||||+|+++|+.+|+.++.+ ..+.++.+||||.+.+.|++.||+++|+||++|.++||+|||+||..
T Consensus 81 ~~yv~~rW~gG~LTN~~~i~~~i~~l~~~~~~~~~~~~~~~~Kke~~~~~r~~~kL~~~~~Gi~~m~~~P~~vii~d~~~ 160 (218)
T 3ofo_B 81 QFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADH 160 (218)
T ss_dssp CCEECSCCCTTTTTTTHHHHHHHHHHHHHHSSSSSSSSSSSCSHHHHHHHHHHHHHTTTCSSSTTCCSCCSSEEEEETGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCH
T ss_conf 97347704588147788887789999999887505863466588887768999999996068111355873477428503
Q ss_pred CCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 712321234339814540367767001152032157726899999999999999999
Q gi|254780779|r 170 EKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGI 226 (278)
Q Consensus 170 e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~ 226 (278)
|++||+||.+|||||||||||||||+.|||||||||||++||+|+++.+++||++|+
T Consensus 161 ~~~ai~Ea~~l~IPvI~ivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~G~ 217 (218)
T 3ofo_B 161 EHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 217 (218)
T ss_dssp GHHHHHHHHHTTCCEEEECCTTSCGGGCSEEECSCSSSHHHHHHHHHTTTTTTTSSC
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 179999999859977998507989765777775788769999999999999998634
No 4
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=100.00 E-value=0 Score=473.37 Aligned_cols=183 Identities=20% Similarity=0.322 Sum_probs=170.9
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 9866245899986088607547765788562102001-881675389999999999999998610788169960782357
Q gi|254780779|r 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCER-NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQAS 79 (278)
Q Consensus 1 m~m~~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~r-ngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~ 79 (278)
|.|...++++||+||+||||+ +|||+|+|||||.| ||+|||||++|+.+|++|++|+..+ +++|.||||||+++++
T Consensus 41 ~~~~e~~i~klL~agvH~Gh~--~~np~M~~YIyg~R~nGi~IIDL~kT~~~L~~A~~~i~~i-~~~~~ilfV~tk~~~~ 117 (253)
T 3bch_A 41 LQMKEEDVLKFLAAGTHLGGT--NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAI-ENPADVSVISSRNTGQ 117 (253)
T ss_dssp -CCCHHHHHHHHHHTTTBCCS--CCCGGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHTC-SSGGGEEEEECSHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCHHHH
T ss_conf 357899999999629230867--4796641204273789738963999999999999999997-4899389997557889
Q ss_pred HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999986339831423345873234266655567789988763012126774678876655677764344332211359
Q gi|254780779|r 80 DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLP 159 (278)
Q Consensus 80 ~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP 159 (278)
.+|+++|++||++||++||+|||||||.+. +.+.|
T Consensus 118 ~~i~k~A~~~g~~yv~~RWlgGtLTN~~~~---------------------------------------------~~~~P 152 (253)
T 3bch_A 118 RAVLKFAAATGATPIAGRFTPGTFTNQIQA---------------------------------------------AFREP 152 (253)
T ss_dssp HHHHHHHHHHCCEEEESCCCTTTTTCCSCS---------------------------------------------TTCSC
T ss_pred HHHHHHHHHHCCCEECCCCCCCCCCHHHHH---------------------------------------------HCCCC
T ss_conf 999999999789303466678741205665---------------------------------------------04578
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 579994388771232123433981454036776700115203215772689999999999999999997443
Q gi|254780779|r 160 DLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHS 231 (278)
Q Consensus 160 ~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~ 231 (278)
|++||+||..|++||+||.++||||||||||||||++|||||||||||++||.||+++|+++|+++++....
T Consensus 153 dliiV~dp~~d~~AI~EA~kl~IPvIgivDTn~dp~~VdypIP~NDdS~kSI~Li~~lLa~ail~~kg~~~~ 224 (253)
T 3bch_A 153 RLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 224 (253)
T ss_dssp SEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSSHHHHHHHHHHHHHHHHHHHTSSCS
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 635886237743776778764997798724899954476577578844889999999999999997077674
No 5
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=0 Score=470.46 Aligned_cols=183 Identities=20% Similarity=0.322 Sum_probs=170.7
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 9866245899986088607547765788562102001-881675389999999999999998610788169960782357
Q gi|254780779|r 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCER-NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQAS 79 (278)
Q Consensus 1 m~m~~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~r-ngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~ 79 (278)
|+|.+-++++||+||+||||+ +|||+|+|||||.| ||+|||||+||+.+|+.|++|+..+ .+||.|||||||++++
T Consensus 8 ~~~ke~di~~lL~agvH~Gh~--~~np~M~~YI~~~R~nGi~IIdL~kT~~~L~~A~~~i~~i-~~~~~ilfV~tk~~~~ 84 (295)
T 2zkq_b 8 LQMKEEDVLKFLAAGTHLGGT--NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAI-ENPADVSVISSRNTGQ 84 (295)
T ss_dssp -----CCHHHHHHHTTTBCCS--CCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHS-SCGGGEEEEECSHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCHHHH
T ss_conf 376889999999719213867--7797761404254689838964999999999999999998-5899379998964699
Q ss_pred HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999986339831423345873234266655567789988763012126774678876655677764344332211359
Q gi|254780779|r 80 DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLP 159 (278)
Q Consensus 80 ~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP 159 (278)
+.|.++|.+||++||++||+|||||||.+ .|.+.|
T Consensus 85 ~~v~k~A~~~g~~~v~~Rw~gG~lTN~i~---------------------------------------------~~~~~P 119 (295)
T 2zkq_b 85 RAVLKFAAATGATPIAGRFTPGTFTNQIQ---------------------------------------------AAFREP 119 (295)
T ss_dssp HHHHHHHHHHCCEEEESSCCCC-CCCTTC---------------------------------------------SSCCCC
T ss_pred HHHHHHHHHHCCEEEECCCCCCCCCCHHH---------------------------------------------HCCCCC
T ss_conf 99999999969973303214886552234---------------------------------------------224578
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 579994388771232123433981454036776700115203215772689999999999999999997443
Q gi|254780779|r 160 DLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHS 231 (278)
Q Consensus 160 ~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~ 231 (278)
+++||+||..|++||+||.++||||||||||||||++|||||||||||++||.||+++|+++|+++++....
T Consensus 120 ~lliv~dp~~d~~av~Ea~~~~IPviai~DTn~~p~~vd~~IP~Ndds~~Si~l~~~~la~~vl~~~g~~~~ 191 (295)
T 2zkq_b 120 RLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISR 191 (295)
T ss_dssp SEEEESCTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEEEESCSSCHHHHHHHHHHHHHHHHHCCSSSSC
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 704776666434889999874999899815899964123577478835879999999999999998287554
No 6
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=100.00 E-value=0 Score=449.57 Aligned_cols=176 Identities=26% Similarity=0.352 Sum_probs=166.1
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 245899986088607547765788562102001-8816753899999999999999986107881699607823579999
Q gi|254780779|r 5 QFTIRQLLESGVQFGHRNFLWNPKMERYIFCER-NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVM 83 (278)
Q Consensus 5 ~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~r-ngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~ 83 (278)
-|++++||+||+||||++++|| |+|||||.| ||+|||||++|+++|++|++|++.+ +|++||||||+++++.+|+
T Consensus 10 lv~~~~ll~agvH~G~~~~~~~--M~~yIyg~R~nGi~IIdL~kT~~~L~~A~~fl~~~--~~~~ILfVgtk~~~~~~v~ 85 (208)
T 1vi6_A 10 LVPPDDYLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY--EPSKILLVAARQYAHKPVQ 85 (208)
T ss_dssp SSCHHHHHHHTTTBCCSCCCTT--TGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS--CGGGEEEEECSGGGHHHHH
T ss_pred CCCHHHHHHHCEEECCCCCCCC--CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHH
T ss_conf 4249999973924787848777--72204151689758967999999999999999855--6772799834588999999
Q ss_pred HHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99863398314233458732342666555677899887630121267746788766556777643443322113595799
Q gi|254780779|r 84 EAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMF 163 (278)
Q Consensus 84 ~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ii 163 (278)
++|++||++||++||+|||||||.+ .+.+.||++|
T Consensus 86 ~~A~~~g~~yv~~rWlgG~LTN~~~---------------------------------------------~~~~~P~~vi 120 (208)
T 1vi6_A 86 MFSKVVGSDYIVGRFIPGTLTNPML---------------------------------------------SEYREPEVVF 120 (208)
T ss_dssp HHHHHHCCEEEESSCCTTTTTCTTS---------------------------------------------TTCCCCSEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHH---------------------------------------------HHCCCCCCCE
T ss_conf 9998646875446456775446677---------------------------------------------7414676607
Q ss_pred EECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 943887712321234339814540367767001152032157726899999999999999999974
Q gi|254780779|r 164 VVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQ 229 (278)
Q Consensus 164 v~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~ 229 (278)
|+||..|++||+||.++||||||||||||||+.|||||||||||++||.|++++|++||++|+++.
T Consensus 121 v~dp~~d~~ai~Ea~~l~IP~I~ivDTn~~p~~vdypIP~Ndds~~Si~li~~lL~~ai~~~k~~~ 186 (208)
T 1vi6_A 121 VNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQD 186 (208)
T ss_dssp ESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 776775379999999809965887249998111887886888638799999999999999981987
No 7
>3jyv_B 40S ribosomal protein S0(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_B
Probab=100.00 E-value=0 Score=449.81 Aligned_cols=180 Identities=26% Similarity=0.383 Sum_probs=168.0
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Q ss_conf 66245899986088607547765788562102001-88167538999999999999999861078816996078235799
Q gi|254780779|r 3 LPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCER-NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDC 81 (278)
Q Consensus 3 m~~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~r-ngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~ 81 (278)
|-..++++||+||+||||++ |||+|+|||||.| ||+|||||++|+.+|++|++|++.+ .++|.||||||+++++..
T Consensus 1 ~~~~di~~ll~Ag~H~Ghk~--~n~~m~~YIyg~R~nGi~IidL~kT~~~L~~A~~~l~~i-~~~~~ilfv~t~~~~~~~ 77 (193)
T 3jyv_B 1 LTPEDAQLLLAANTHLGARN--VQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAI-PNPEDVVAISSRTFGQRA 77 (193)
T ss_dssp CCCTTTTTHHHHTSSCCCSC--CCTTTTTTEEEECTTSCEEECHHHHHHHHHHHHHHHTTS-CSGGGEEECBCSSHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCC--CCCCCCCCEECCCCCCEEEECHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCHHHHHH
T ss_conf 98799999998095747687--798763644266689848975999999999999999986-179967998274889999
Q ss_pred HHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99998633983142334587323426665556778998876301212677467887665567776434433221135957
Q gi|254780779|r 82 VMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDL 161 (278)
Q Consensus 82 i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ 161 (278)
|.++|.+||++||++||+|||||||++++ .+.|++
T Consensus 78 i~~~a~~~~~~~v~~rW~~G~lTN~~~~~---------------------------------------------~~~p~l 112 (193)
T 3jyv_B 78 VLKFAAHTGATPIAGRFTPGSFTNYITRS---------------------------------------------FKEPRL 112 (193)
T ss_dssp HHHHHHHHCCBCCBSCCCSCSSSCSSSTT---------------------------------------------CCCCSE
T ss_pred HHHHHHHCCCCEECCCCCCCCCCCEEEEC---------------------------------------------CCCCCC
T ss_conf 99999981890204500488555401111---------------------------------------------235886
Q ss_pred EEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999438877123212343398145403677670011520321577268999999999999999999744
Q gi|254780779|r 162 MFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQH 230 (278)
Q Consensus 162 iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~ 230 (278)
+||+||..|++||+||.++||||||||||||||+.|||||||||||.+||+|++++|++||++|++...
T Consensus 113 ~iv~dp~~~~~ai~EA~~l~IPvI~ivDTn~~p~~idypIP~Ndds~~Si~li~~ll~~ail~~kg~~~ 181 (193)
T 3jyv_B 113 VIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALV 181 (193)
T ss_dssp EECSCTTTSHHHHHHHHHTTCCEEEEECTTCCCSSCSEEEESCSSCTTHHHHHHHHHHHHHHHHHTCCC
T ss_pred CEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 433467664166677875699878750689985446656626783687999999999999999818888
No 8
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=97.65 E-value=0.0018 Score=41.95 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999861078816996078235799999986339831423345873-2342666555677899887630121
Q gi|254780779|r 49 VPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGM-MTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 49 ~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~-LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
...+.+|.+.+.+...+||+|++.|....+...-.-.+.-.+.+....++++.. |+.-..+...+.. +.++
T Consensus 25 ~~~I~~a~~~i~~~~~~~~kI~~~GnGgSa~~A~h~a~~~~~~~~~~~~~~~~i~l~~~~~~~ta~~n--------d~~~ 96 (188)
T 1tk9_A 25 KGQIAKVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGN--------DYGF 96 (188)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHH--------HTCG
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCH
T ss_conf 89999999999999987998999968731888999999845886456532222146787322233124--------5898
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHCCCEE
Q ss_conf 26774678876655677764344332211359579994388771----23212343398145403677670--0115203
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLVDYVI 201 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~idypI 201 (278)
+.. +.|+. +...+--|+++++....++ .|++.|++.|+++|+++..+.++ ...|+.|
T Consensus 97 ~~~-------f~~ql----------~~~~~~gDvlI~iS~SG~s~nii~a~~~Ak~~g~~~i~ltg~~~~~l~~~~D~~i 159 (188)
T 1tk9_A 97 EFV-------FSRQV----------EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNL 159 (188)
T ss_dssp GGH-------HHHHH----------HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEE
T ss_pred HHH-------HHHHH----------HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEE
T ss_conf 999-------99999----------9837899989998289999557789999998799899995789526798689889
Q ss_pred EECCCCHHHHH----HHHHHHHHHH
Q ss_conf 21577268999----9999999999
Q gi|254780779|r 202 PGNDDSSRSIA----LFCDLVASAA 222 (278)
Q Consensus 202 P~NDds~~si~----l~~~~i~~ai 222 (278)
-.+.+...-|+ +++..+++.|
T Consensus 160 ~vps~~~~~iee~h~~~~H~l~~~i 184 (188)
T 1tk9_A 160 VVPSDDTARIQEMHILIIHTLCQII 184 (188)
T ss_dssp EESCSCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9799982999999999999999999
No 9
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=97.43 E-value=0.00067 Score=44.78 Aligned_cols=149 Identities=16% Similarity=0.220 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999861078816996078235799999986339831423345-8732342666555677899887630121
Q gi|254780779|r 49 VPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWL-GGMMTNWKTVSQSIQKLRDLEELLNKEN 127 (278)
Q Consensus 49 ~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWl-GG~LTN~~ti~~si~~l~~l~~~~~~~~ 127 (278)
+..+.+|++.+.+...+||+|+|.|+..-+...-.-.++..+.+.....=+ --.++|-.++.... .+.++
T Consensus 47 ~~~I~~aa~~i~~~~~~ggrI~~~GnGgSa~~A~h~a~e~~~~~~~~~~~~~~~~l~~~~~~ta~~---------nd~~~ 117 (212)
T 2i2w_A 47 IHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVG---------NDFGF 117 (212)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHHHHCTTSSSCSEEECCCTTCGGGGS---------CCCSC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHHHH---------CCCCH
T ss_conf 999999999999999879979999689525529989998718754344543212478878878887---------16778
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHCCCEE
Q ss_conf 26774678876655677764344332211359579994388771----23212343398145403677670--0115203
Q gi|254780779|r 128 QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLVDYVI 201 (278)
Q Consensus 128 ~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~idypI 201 (278)
+.. +.++ ++...+.-|+++++....+. .|++.|++.|++||+|+--+..+ ...||+|
T Consensus 118 ~~~-------f~~q----------l~~~~~~gDvli~iS~SG~s~nvi~al~~Ak~~G~~ti~lTg~~g~~l~~~~Di~I 180 (212)
T 2i2w_A 118 NDI-------FSRY----------VEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI 180 (212)
T ss_dssp SSH-------HHHH----------HHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEE
T ss_pred HHH-------HHHH----------HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCEEE
T ss_conf 999-------9999----------99857898879998089998328999999998599899997788733677399899
Q ss_pred --EECCCCHH--HH-HHHHHHHHHHHH
Q ss_conf --21577268--99-999999999999
Q gi|254780779|r 202 --PGNDDSSR--SI-ALFCDLVASAAI 223 (278)
Q Consensus 202 --P~NDds~~--si-~l~~~~i~~ai~ 223 (278)
|..++.-+ -+ -+++..+++.|.
T Consensus 181 ~vps~~~~~~iee~h~~~~H~l~~~i~ 207 (212)
T 2i2w_A 181 RVPHFGYADRIQEIHIKVIHILIQLIE 207 (212)
T ss_dssp EECCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 869999669999999999999999999
No 10
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=96.71 E-value=0.039 Score=33.38 Aligned_cols=153 Identities=15% Similarity=0.244 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999861078816996078235799999986339831423345873-234266655567789988763
Q gi|254780779|r 45 LSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGM-MTNWKTVSQSIQKLRDLEELL 123 (278)
Q Consensus 45 L~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~-LTN~~ti~~si~~l~~l~~~~ 123 (278)
.++....+.+|.+.+.+...++|+|++.|...-+...-.-.+.-.+.+-....=++-. |+.-......+. .
T Consensus 27 ~~~~~~~I~~aa~~i~~~l~~~gkI~~~G~G~S~~~A~~~a~~l~~~~~~~r~~l~a~~l~~~~~~~ta~~--------n 98 (198)
T 2xbl_A 27 DERLLATVRKVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIG--------N 98 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHH--------H
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC--------C
T ss_conf 06459999999999999998799799997880077799999997111114664515787337643120400--------3
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHC
Q ss_conf 012126774678876655677764344332211359579994388771----23212343398145403677670--011
Q gi|254780779|r 124 NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLV 197 (278)
Q Consensus 124 ~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~i 197 (278)
+.+++..- .|+. +...+-=|++|++....+. .|++.|++.|++||+|...+..+ ...
T Consensus 99 d~~~~~~~-------~~ql----------~~~~~~gDvli~iS~SG~s~~ii~a~~~Ak~~g~~~iaitg~~~~~l~~~~ 161 (198)
T 2xbl_A 99 DYGYEKLF-------SRQV----------QALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELC 161 (198)
T ss_dssp HHCGGGTT-------HHHH----------HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHC
T ss_pred CCCHHHHH-------HHHH----------HHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHC
T ss_conf 46678999-------9999----------962799998999708999768999999999859989999689985468859
Q ss_pred CCEEEECCCCHHHH----HHHHHHHHHHH
Q ss_conf 52032157726899----99999999999
Q gi|254780779|r 198 DYVIPGNDDSSRSI----ALFCDLVASAA 222 (278)
Q Consensus 198 dypIP~NDds~~si----~l~~~~i~~ai 222 (278)
|+.|-.+.+....| -+++..+++.|
T Consensus 162 D~~i~ips~~~~~i~e~hl~i~h~l~eli 190 (198)
T 2xbl_A 162 DLLLEVPSADTPKIQEGHLVLGHIVCGLV 190 (198)
T ss_dssp SEEEECSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999799983999999999999999999
No 11
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar binding protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=96.33 E-value=0.067 Score=31.85 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999986107881699607823579999998633983142334587323--4266655567789988763012
Q gi|254780779|r 49 VPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMT--NWKTVSQSIQKLRDLEELLNKE 126 (278)
Q Consensus 49 ~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LT--N~~ti~~si~~l~~l~~~~~~~ 126 (278)
...+.+|+..+.+...++|+|++.|....+...-.-.+.-.+.+.....=++...- |-..+. .+. -+.+
T Consensus 24 ~~~i~~aa~~i~~~~~~~~kI~~~GnGgSa~~A~h~a~~l~~~~~~~r~~l~ai~l~~~~~~~t-a~~--------nD~~ 94 (196)
T 2yva_A 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLT-AIA--------NDRL 94 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHH-HHT--------TSTT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHC-CCC--------CCHH
T ss_conf 9999999999999998799899998867288999999998661002566704897267703202-223--------7336
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC-HH----C
Q ss_conf 126774678876655677764344332211359579994388771----23212343398145403677670-01----1
Q gi|254780779|r 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP-DL----V 197 (278)
Q Consensus 127 ~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp-~~----i 197 (278)
++. .+.|+ ++.+.+.-|+++++....++ .|++.|++.|+.+|+|+-.+..+ .. -
T Consensus 95 ~~~-------~f~~q----------l~~~~~~gDvli~iS~SGns~nvi~a~~~Ak~~g~~~i~ltg~~gg~l~~l~~~~ 157 (196)
T 2yva_A 95 HDE-------VYAKQ----------VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQ 157 (196)
T ss_dssp GGG-------HHHHH----------HHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTT
T ss_pred HHH-------HHHHH----------HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCCC
T ss_conf 889-------99999----------9973578977999848999743999999999869989999478884277615668
Q ss_pred CCEEEECCCCHHHHH----HHHHHHHHHH
Q ss_conf 520321577268999----9999999999
Q gi|254780779|r 198 DYVIPGNDDSSRSIA----LFCDLVASAA 222 (278)
Q Consensus 198 dypIP~NDds~~si~----l~~~~i~~ai 222 (278)
|+.|..+.++..-|+ +++..|++.|
T Consensus 158 Di~i~vps~~~~~iee~hl~i~H~l~~li 186 (196)
T 2yva_A 158 DVEIRIPSHRSARIQEMHMLTVNCLCDLI 186 (196)
T ss_dssp SEEEECSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 88999489981999999999999999999
No 12
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=95.90 E-value=0.11 Score=30.51 Aligned_cols=148 Identities=18% Similarity=0.239 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999986107881699607823579999998633983142334587-323426665556778998876301212
Q gi|254780779|r 50 PMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGG-MMTNWKTVSQSIQKLRDLEELLNKENQ 128 (278)
Q Consensus 50 ~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG-~LTN~~ti~~si~~l~~l~~~~~~~~~ 128 (278)
..+.+|+..+.+...+||+|+|.|....+...-.-.+.-.+.+.....=++. .|+.-...-..+. -+-+|+
T Consensus 29 ~~I~~aa~~i~~~~~~~~kI~~~GnGgSaa~A~h~a~dl~~~~~~~~~~l~~i~l~~~~~~~ta~~--------Nd~g~~ 100 (199)
T 1x92_A 29 PYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIA--------NDYSYN 100 (199)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHH--------HHTCGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHCC--------CCCCHH
T ss_conf 999999999999998799899997866277799999997330002544443577568813443202--------676699
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH----HHHHHHHCCCEEEEECCCCCCC-------HHC
Q ss_conf 67746788766556777643443322113595799943887712----3212343398145403677670-------011
Q gi|254780779|r 129 GFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKL----AIQEARRLRIPIVAVVDTNSNP-------DLV 197 (278)
Q Consensus 129 ~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~----Av~EA~kl~IPvIaivDTn~dp-------~~i 197 (278)
.. +.|+ ++...+.-|+++++....++- |+.-|++.|+.+|+++-.+.+. ..+
T Consensus 101 ~~-------f~~q----------l~~~~~~gDvli~iS~SG~S~nii~a~~~Ak~~g~~~i~ltG~~gg~~~~l~~~~Di 163 (199)
T 1x92_A 101 EV-------FSKQ----------IRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDV 163 (199)
T ss_dssp GT-------THHH----------HHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCE
T ss_pred HH-------HHHH----------HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHCCCCCCE
T ss_conf 99-------9999----------996378998899984799994578999999986996999981788517651566888
Q ss_pred CCEEEECCCCHHHH----HHHHHHHHHHHHH
Q ss_conf 52032157726899----9999999999999
Q gi|254780779|r 198 DYVIPGNDDSSRSI----ALFCDLVASAAID 224 (278)
Q Consensus 198 dypIP~NDds~~si----~l~~~~i~~ai~~ 224 (278)
-+.||.++ ..-| -+++..+++.|.+
T Consensus 164 ~i~vps~~--~~~iee~hl~i~H~l~~~i~~ 192 (199)
T 1x92_A 164 EIRVPSKI--TARIQEVHLLAIHCLCDLIDR 192 (199)
T ss_dssp EEECSCSC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCC--HHHHHHHHHHHHHHHHHHHHH
T ss_conf 99958997--299999999999999999999
No 13
>1nri_A Hypothetical protein HI0754; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=93.23 E-value=0.49 Score=26.26 Aligned_cols=156 Identities=13% Similarity=0.281 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999998610788169960782357999999863398314233458732-34266655567789988763
Q gi|254780779|r 45 LSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMM-TNWKTVSQSIQKLRDLEELL 123 (278)
Q Consensus 45 L~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~L-TN~~ti~~si~~l~~l~~~~ 123 (278)
+++.+..+.+|...+.+...+||+|.++|....+.-.+.-.++-..-|......+.|.. -.+..+..+..-
T Consensus 50 v~~~l~~I~~av~~i~~~l~~gGri~~~G~GtSG~la~~~a~e~~~tf~~~~~~~~~~iaggd~al~~~~e~-------- 121 (306)
T 1nri_A 50 IESCLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEG-------- 121 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHCCHHCCCCCHHHHHHHHH--------
T ss_conf 999899999999999999974985999768723999999999864656898221300026793887656651--------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHC
Q ss_conf 01212677467887665567776434433221135957999438877----123212343398145403677670--011
Q gi|254780779|r 124 NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLV 197 (278)
Q Consensus 124 ~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~i 197 (278)
.+.... ...++..++ ++ .--|++|.+-...+ ..++..|++.|+++|+++--...+ ...
T Consensus 122 ---~ed~~~----~~~~~~~~~-----~i----~~~DvvI~IS~SG~tp~vi~al~~Ak~~G~~ti~it~~~~s~l~~~a 185 (306)
T 1nri_A 122 ---AEDNTK----AVLNDLQSI-----HF----SKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIA 185 (306)
T ss_dssp ---GGGCTT----HHHHHHHHT-----TC----CTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHS
T ss_pred ---CCCCHH----HHHHHHHHH-----CC----CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHC
T ss_conf ---246488----999999995-----79----98884899968999645799999999726866999768875100217
Q ss_pred CCEEEECC-----------CCHHHHHHHHHHHHHHHHH
Q ss_conf 52032157-----------7268999999999999999
Q gi|254780779|r 198 DYVIPGND-----------DSSRSIALFCDLVASAAID 224 (278)
Q Consensus 198 dypIP~ND-----------ds~~si~l~~~~i~~ai~~ 224 (278)
|++|...- -+--+..++++.++-....
T Consensus 186 d~~I~~~~g~E~~~gs~r~~a~ta~k~iLn~ist~~~~ 223 (306)
T 1nri_A 186 DIAIETIVGPEILTGSSRLKSGTAQKMVLNMLTTASMI 223 (306)
T ss_dssp SEEEECCCCSCSSTTCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 76785488976456765748999999999999999999
No 14
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase, center for structural genomics of infectious diseases; 2.35A {Vibrio cholerae}
Probab=91.74 E-value=0.35 Score=27.22 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=16.7
Q ss_pred CCEEEEECCCCCCHHHH-HHHHCCCEEEEEC
Q ss_conf 95799943887712321-2343398145403
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQ-EARRLRIPIVAVV 188 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~-EA~kl~IPvIaiv 188 (278)
||+|+|.+=..+..|.. =|..++||++.+-
T Consensus 112 pD~VlV~GDr~e~la~a~aa~~~~ipi~Hie 142 (396)
T 3dzc_A 112 PDVVLVHGDTATTFAASLAAYYQQIPVGHVE 142 (396)
T ss_dssp CSEEEEETTSHHHHHHHHHHHTTTCCEEEET
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 9999995888622548999998299789997
No 15
>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583}
Probab=91.21 E-value=0.65 Score=25.50 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 359579994388771232123433981------4540367
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
..|++||+.+-.--..+++.++++|+- |+|+-|+
T Consensus 176 ~~~~ai~~~~d~~A~gv~~~l~~~g~~vP~dv~vig~d~~ 215 (277)
T 3cs3_A 176 TEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFDNS 215 (277)
T ss_dssp CSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSSCC
T ss_pred CCCEEEEECCHHHHHCHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf 8870787178788635589999749988984389998888
No 16
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=88.78 E-value=1.3 Score=23.44 Aligned_cols=62 Identities=15% Similarity=0.063 Sum_probs=38.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCCC----CCCHHCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 359579994388771232123433981------45403677----670011520321577268999999999
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDTN----SNPDLVDYVIPGNDDSSRSIALFCDLV 218 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDTn----~dp~~idypIP~NDds~~si~l~~~~i 218 (278)
..|+++|+.+-..-.-+++.+++.|+- +||+-|+. +.|..-++-+|...=+.+++++++..+
T Consensus 175 ~~~~ai~~~~d~~a~g~~~~l~~~g~~iP~dv~vvg~d~~~~~~~~~p~lttv~~~~~~ig~~av~~l~~~i 246 (280)
T 3gyb_A 175 PEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYDNTPLAQTRLINLTTIDDNSIGVGYNAALLLLSML 246 (280)
T ss_dssp TTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCCHHHHSTTTCCCEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 998389956889999999999987998998769999898189870489825998599999999999999996
No 17
>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396}
Probab=88.68 E-value=1.4 Score=23.40 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=14.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCE----EEEE
Q ss_conf 9579994388771232123433981----4540
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIP----IVAV 187 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IP----vIai 187 (278)
++++|+.+-..-.-+++.++..|++ ++|+
T Consensus 188 ~~ai~~~~d~~a~g~~~a~~~~g~~~~i~vvg~ 220 (276)
T 3ksm_A 188 IDGLFTPNESTTIGALVAIRQSGMSKQFGFIGF 220 (276)
T ss_dssp CCEEECCSHHHHHHHHHHHHHTTCTTSSEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 504423782999999999997699998189987
No 18
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=87.34 E-value=1.6 Score=22.87 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=32.7
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHCCCEEE
Q ss_conf 957999438877----123212343398145403677670--01152032
Q gi|254780779|r 159 PDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVIP 202 (278)
Q Consensus 159 P~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~idypIP 202 (278)
=|++|++....+ .-+++.|++.|++||+|.+...+| ...||.|.
T Consensus 80 ~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~ 129 (186)
T 1m3s_A 80 GDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIR 129 (186)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEE
T ss_conf 99999983897514699999999987995999979999967996899999
No 19
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485}
Probab=87.01 E-value=0.75 Score=25.07 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=19.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 359579994388771232123433981------4540367
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
..|+++|+.+-..-.-+++.+..+|+- ++|+-|+
T Consensus 187 ~~~~ai~~~~d~~A~gv~~~l~~~g~~vp~disvig~d~~ 226 (287)
T 3bbl_A 187 RRPTAIMTLNDTMAIGAMAAARERGLTIGTDLAIIGFDDA 226 (287)
T ss_dssp TSCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEECCCCH
T ss_conf 9975999887788899999999859998865023303876
No 20
>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=84.05 E-value=2.4 Score=21.85 Aligned_cols=142 Identities=19% Similarity=0.280 Sum_probs=68.1
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHCCCEECCC-------CCCCCCCCCHHHHH-
Q ss_conf 16753899999999999999986107-8816996078235799999986339831423-------34587323426665-
Q gi|254780779|r 40 THIIDLSQTVPMLQKALQVISDTVAR-GGRILFVATKSQASDCVMEAAKRSAQYCVNS-------KWLGGMMTNWKTVS- 110 (278)
Q Consensus 40 ihIIdL~kT~~~L~~A~~~i~~i~~~-gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~-------RWlGG~LTN~~ti~- 110 (278)
+...|++. ..|+....+.+.+++. |..+=|..|--- +.|. .|.-||.. |.-||..--|.+--
T Consensus 46 l~L~Did~--~rL~~~~~l~~~~~~~~~~~~~v~~Ttdr------~eAl-~gADfVi~~i~~~~~Rvg~~~~r~~ded~~ 116 (483)
T 1vjt_A 46 IYMMDVHE--RRLNASYILARKYVEELNSPVKIVKTSSL------DEAI-DGADFIINTAYPYDPRYHDSGSQRWDEVTK 116 (483)
T ss_dssp EEEECSCH--HHHHHHHHHHHHHHHHHTCCCEEEEESCH------HHHH-TTCSEEEECCCCCCTTTCSSHHHHHHHHHH
T ss_pred EEEECCCH--HHHHHHHHHHHHHHHHCCCCEEEEEECCH------HHHH-CCCCEEEEEEEECCCCCCCCCCCCCCCEEC
T ss_conf 99968998--99999999999999961989089997899------9997-699999980310556546766433331232
Q ss_pred --HHHHHHHHHHHHHHCCCCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH-
Q ss_conf --5567789988763012126774--------67887665567776434433221135957999438877123212343-
Q gi|254780779|r 111 --QSIQKLRDLEELLNKENQGFTK--------KERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARR- 179 (278)
Q Consensus 111 --~si~~l~~l~~~~~~~~~~~tk--------Ke~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~k- 179 (278)
..+.-...+-.|+.++..+|.+ +..+.+-|..+++- |+|.++==++-- ..|.||-+
T Consensus 117 Ip~K~gl~~gv~gQet~G~GG~~~alRtip~ipv~leia~di~e~~------------P~AwliNyTNP~-~ivt~Av~~ 183 (483)
T 1vjt_A 117 VGEKHGYYRGIDSQELNMVSTYTYVLSSYPDMKLALEIAEKMKKMA------------PKAYLMQTANPV-FEITQAVRR 183 (483)
T ss_dssp HHHHTTCTTCTTCBTTBCCTTSCSTTTCHHHHHHHHHHHHHHHHHC------------TTCEEEECSSCH-HHHHHHHHH
T ss_pred CCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC------------CCEEEEECCCHH-HHHHHHHHH
T ss_conf 4312150025456526787655131025630299999999999769------------980899807888-999999985
Q ss_pred -CCCEEEEECCC-----------CCCCHHCCCEEEE
Q ss_conf -39814540367-----------7670011520321
Q gi|254780779|r 180 -LRIPIVAVVDT-----------NSNPDLVDYVIPG 203 (278)
Q Consensus 180 -l~IPvIaivDT-----------n~dp~~idypIP~ 203 (278)
-++++|||||+ +.+|+.|+|-..|
T Consensus 184 ~~~~k~vGLC~~~~~~~~~~~~lgv~~~~v~~~~~G 219 (483)
T 1vjt_A 184 WTGANIVGFCHGVAGVYEVFEKLDLDPEEVDWQVAG 219 (483)
T ss_dssp HSCCCEEECCCGGGGHHHHHHHTTCCGGGEEEEEEE
T ss_pred CCCCCEEEECCCHHHHHHHHHHCCCCHHHEEEEEEE
T ss_conf 269988996897277999999819998893899994
No 21
>3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=84.01 E-value=2.4 Score=21.84 Aligned_cols=114 Identities=16% Similarity=0.253 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999861078816996078235799999986339831423345873234266655567789988763012126
Q gi|254780779|r 50 PMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQG 129 (278)
Q Consensus 50 ~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~ 129 (278)
..+.+|...+.+...++|+|++.|....+. +-.+++.+.+......++....++-......+ ..++. ...
T Consensus 26 ~~i~~aa~~ia~~i~~~~rI~i~G~G~S~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~e~-----~~~ 95 (243)
T 3cvj_A 26 QAIIKGAHLVSEAVMNGGRFYVFGSGHSHM-IAEEIYNRAGGLALVTAILPPELMLHERPNKS----TYLER-----IEG 95 (243)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESGGGHH-HHHHTSSSTTCBTTEEECCCGGGSSSSSTTHH----HHHTT-----CTT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH----HHHHH-----HHH
T ss_conf 999999999999997599899992784127-79999998478876552235421245524566----67664-----556
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CHHHHHHHHCCCEEEEECC
Q ss_conf 77467887665567776434433221135957999438877----1232123433981454036
Q gi|254780779|r 130 FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE----KLAIQEARRLRIPIVAVVD 189 (278)
Q Consensus 130 ~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e----~~Av~EA~kl~IPvIaivD 189 (278)
+ ....+ ....+ +-=|++|++....+ --|+++|++.|+|||+|..
T Consensus 96 ~---~~~~~---------~~~~i----~~~DvvI~iS~SG~t~~vi~a~~~AK~~G~~vIaIT~ 143 (243)
T 3cvj_A 96 L---SKSYL---------KLHQV----TNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTS 143 (243)
T ss_dssp H---HHHHH---------HHTTC----CTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred H---HHHHH---------HHHCC----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 8---99999---------98079----9999999977899999999999999987994999808
No 22
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=83.89 E-value=2.4 Score=21.81 Aligned_cols=63 Identities=8% Similarity=0.020 Sum_probs=32.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCCCC----CCHHCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 1359579994388771232123433981------454036776----70011520321577268999999999
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDTNS----NPDLVDYVIPGNDDSSRSIALFCDLV 218 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDTn~----dp~~idypIP~NDds~~si~l~~~~i 218 (278)
...|+++|+.+-..-.-+++.++..|+. ++|+-|+.. .|..-++-.|...-+.+++++++..+
T Consensus 186 ~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~dv~iigfd~~~~~~~~~p~ltti~~~~~~~g~~a~~~l~~~i 258 (288)
T 3gv0_A 186 SDRPDGIVSISGSSTIALVAGFEAAGVKIGEDVDIVSKQSAEFLNWIKPQIHTVNEDIKLAGRELAKALLARI 258 (288)
T ss_dssp SSCCSEEEESCHHHHHHHHHHHHTTTCCTTTSCEEEEEESSTTHHHHCTTSEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 2577523446669999999999984998898518999778289982699846999799999999999999997
No 23
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=83.56 E-value=2 Score=22.29 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=27.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHCC----CEEEEECCCCCCCHH--------CCCEEEECCCCHHHHHHHHHHH
Q ss_conf 95799943887712321234339----814540367767001--------1520321577268999999999
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLR----IPIVAVVDTNSNPDL--------VDYVIPGNDDSSRSIALFCDLV 218 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~----IPvIaivDTn~dp~~--------idypIP~NDds~~si~l~~~~i 218 (278)
+++||+.+-.--.-|++-++..| |.++|+=++..+.+. ++.-|.-+.-+..+++++..++
T Consensus 189 i~aI~~~nD~~a~Ga~~Al~~~G~~~~i~vvG~D~~~~~~~~l~~i~~g~i~atv~q~~~G~~av~~~~~~l 260 (325)
T 2x7x_A 189 IDAVYAHNDRIAPGAYQAAKMAGREKEMIFVGIDALPGKGNGLELVLDSVLDATFIYPTNGDKVLQLAMDIL 260 (325)
T ss_dssp CCEEEESSTTHHHHHHHHHHHTTCTTSSEEEEEECCCSTTSHHHHHHTTSCSEEEECCCCHHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 877985683899999999997699999399998997457999999874885599968189999999999997
No 24
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=83.36 E-value=2.5 Score=21.67 Aligned_cols=47 Identities=19% Similarity=0.303 Sum_probs=34.5
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHCCCEE--EECC
Q ss_conf 957999438877----123212343398145403677670--0115203--2157
Q gi|254780779|r 159 PDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVI--PGND 205 (278)
Q Consensus 159 P~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~idypI--P~ND 205 (278)
-|++|++....+ ..+++.|++.|+|+|+|.|...+| ...||.| |++.
T Consensus 90 ~DvvI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~~ 144 (200)
T 1vim_A 90 QDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKM 144 (200)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSSC
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEEECCCC
T ss_conf 9989985799774216999999998799699997999997899599999938987
No 25
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815}
Probab=82.25 E-value=2.4 Score=21.84 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=29.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCC--E----EEEECCCCC----CCHHCCCEEEECCCCHHHHHHHH
Q ss_conf 35957999438877123212343398--1----454036776----70011520321577268999999
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRI--P----IVAVVDTNS----NPDLVDYVIPGNDDSSRSIALFC 215 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~I--P----vIaivDTn~----dp~~idypIP~NDds~~si~l~~ 215 (278)
..|+++|+.+-..-.-+++-+..+|+ | +||+-|+.. .|..-++-+|...=+..+++++.
T Consensus 188 ~~~~ai~~~~d~~a~g~~~al~~~g~~vP~dv~vig~d~~~~~~~~~p~ltti~~~~~~~g~~av~~L~ 256 (290)
T 2rgy_A 188 APFTGLFCANDTMAVSALARFQQLGISVPGDVSVIGYDDDYSAAYAAPALTSVHIPTAELTQNAVRWLI 256 (290)
T ss_dssp CCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTTSTTSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 676338853738888899999986998999618999798389982489945999499999999999999
No 26
>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum}
Probab=81.83 E-value=2.7 Score=21.49 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=11.2
Q ss_pred EEEECCHHHHHHHHHHHHHCCCEECC
Q ss_conf 99607823579999998633983142
Q gi|254780779|r 70 LFVATKSQASDCVMEAAKRSAQYCVN 95 (278)
Q Consensus 70 LFVgTk~~~~~~i~~~A~~~~~~yV~ 95 (278)
++..+...+....-+.+.+.|.|.|.
T Consensus 69 ii~~~~~~~~~~~l~~~~~~giPVV~ 94 (293)
T 3l6u_A 69 FITTLDDVYIGSAIEEAKKAGIPVFA 94 (293)
T ss_dssp EEECSCTTTTHHHHHHHHHTTCCEEE
T ss_pred EEECCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 99433220138999999986997997
No 27
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=80.08 E-value=2.7 Score=21.52 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=23.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 1359579994388771232123433981------4540367
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
...|++||+.+...-.-+++.+.++|+. ++|+=|+
T Consensus 178 ~~~~~aii~~~d~~a~g~~~al~~~g~~vp~~i~vvg~D~~ 218 (276)
T 2h0a_A 178 ASPPLNVFAGADQVALGVLEEAVRLGLTPGRDVRVLGFDGH 218 (276)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTSCTTTTSEEEEEESCC
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEECCCC
T ss_conf 56776899677799999999999869988965311422783
No 28
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=79.30 E-value=1.7 Score=22.81 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=31.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCCC----CCCHHCCCEEEECCCCHHHHHHHHHH
Q ss_conf 59579994388771232123433981------45403677----67001152032157726899999999
Q gi|254780779|r 158 LPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDTN----SNPDLVDYVIPGNDDSSRSIALFCDL 217 (278)
Q Consensus 158 lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDTn----~dp~~idypIP~NDds~~si~l~~~~ 217 (278)
.|+++|+.+-..-.-+++.+.+.|+. ++++-|+. .+|..-+.-+|...=+.+++++++..
T Consensus 185 ~~~ai~~~~d~~a~~~~~~l~~~gl~iP~dv~vi~~d~~~~~~~~~p~lttv~~~~~~~g~~av~~l~~~ 254 (290)
T 3clk_A 185 DLTGIIAASDMTAIGILNQASSFGIEVPKDLSIVSIDGTEMCKITRPQLTSISQDFFQMGVTGVQQIHQS 254 (290)
T ss_dssp CCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTHHHHSSSCCEEEECCHHHHHHHHHHHHHHH
T ss_pred CCEEECCCCHHHHHCHHHHHHHHHCCCCCCCHHCCCCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 1104414776765343899987405686310001558768998328995499809999999999999999
No 29
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=79.26 E-value=3.4 Score=20.87 Aligned_cols=37 Identities=14% Similarity=0.305 Sum_probs=19.9
Q ss_pred CCEEEEEC---CCCCCHHHHHHHHCCCEEEEECCCCCCCHHCC
Q ss_conf 95799943---88771232123433981454036776700115
Q gi|254780779|r 159 PDLMFVVD---TNREKLAIQEARRLRIPIVAVVDTNSNPDLVD 198 (278)
Q Consensus 159 P~~iiv~d---~~~e~~Av~EA~kl~IPvIaivDTn~dp~~id 198 (278)
+++|++.+ ...-..|++++.+-.|+++|+ |+.|..++
T Consensus 204 ~~~i~~~~d~~a~g~~~al~~~g~~~i~v~g~---D~~~~~~~ 243 (309)
T 2fvy_A 204 IEVVIANNDAMAMGAVEALKAHNKSSIPVFGV---DALPEALA 243 (309)
T ss_dssp CCEEEESSHHHHHHHHHHHHHTTCTTSCEECS---BCCHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCCEEEEE---CCCHHHHH
T ss_conf 64476268578899999999829999769997---79899999
No 30
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=79.21 E-value=1 Score=24.22 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=12.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHCC----CEEEEECC
Q ss_conf 95799943887712321234339----81454036
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLR----IPIVAVVD 189 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~----IPvIaivD 189 (278)
+++||..+-.--.-+++-+...| |.++|+-+
T Consensus 190 ~daI~~~~d~~a~ga~~A~~~~g~~~~i~vvg~D~ 224 (303)
T 3d02_A 190 LKAVVSFGSNGPIGAGRAVKEKRAKNKVAVYGMMI 224 (303)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCTTTCEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 72999889779999999999769999829999998
No 31
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=78.55 E-value=3.7 Score=20.61 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=38.5
Q ss_pred CCEEEEECCCCCCH----HHHHHHHCCCEEEEECCCCCCC--HHCCCEEEEC---CCCHHHHHHHH
Q ss_conf 95799943887712----3212343398145403677670--0115203215---77268999999
Q gi|254780779|r 159 PDLMFVVDTNREKL----AIQEARRLRIPIVAVVDTNSNP--DLVDYVIPGN---DDSSRSIALFC 215 (278)
Q Consensus 159 P~~iiv~d~~~e~~----Av~EA~kl~IPvIaivDTn~dp--~~idypIP~N---Dds~~si~l~~ 215 (278)
.++||.+.+..+.. |++.|++.|.++|+|++....| ...|+.|+.+ +.++-+...|.
T Consensus 92 ~~lvI~iSqSG~T~etv~al~~ak~~g~~~i~itn~~~S~la~~ad~~i~~~~g~E~~~~~Tk~~~ 157 (344)
T 3fj1_A 92 RALCLAVSQSGKSPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAHTIDIHAGPELSVAATKTFV 157 (344)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEECCCCCCCSTTCHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 818999956889759999999986659949998447898600135644114568741156687899
No 32
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=78.52 E-value=3.7 Score=20.61 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=13.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 95799943887712321234339814540
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
|+.++.+.......+...|..++||++.+
T Consensus 97 ~~~i~~~~~~~~~~~~~~a~~~~ip~~~~ 125 (364)
T 1f0k_A 97 PDVVLGMGGYVSGPGGLAAWSLGIPVVLH 125 (364)
T ss_dssp CSEEEECSSTTHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCEEEE
T ss_conf 77799846755686999975358878998
No 33
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=77.51 E-value=4 Score=20.42 Aligned_cols=109 Identities=12% Similarity=0.187 Sum_probs=67.8
Q ss_pred CCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH----HHHHHHHHHHHCC---CEECCC
Q ss_conf 657885621020018816753899999999999999986107881699607823----5799999986339---831423
Q gi|254780779|r 24 LWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQ----ASDCVMEAAKRSA---QYCVNS 96 (278)
Q Consensus 24 ~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~----~~~~i~~~A~~~~---~~yV~~ 96 (278)
.-+|...++. + .-+.+|...|.+-+.++.+|++.|---. +.-+..++....| .|||.+
T Consensus 45 ~l~p~l~~~~--------l-------~dm~~Av~ri~~Ai~~~ekI~I~GDYDvDGiTStaIL~~~L~~lg~~v~~yIP~ 109 (666)
T 2zxr_A 45 DLDPPLALLP--------L-------KGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPH 109 (666)
T ss_dssp GTSCCCCCCC--------C-------TTHHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEECCC-
T ss_pred HHCCCCCCCC--------C-------CCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9595544377--------4-------489999999999997699899997468416899999999999889965998889
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCHHHH
Q ss_conf 345873234266655567789988763012126774678876655677764344332211359579994388-7712321
Q gi|254780779|r 97 KWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTN-REKLAIQ 175 (278)
Q Consensus 97 RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~-~e~~Av~ 175 (278)
|.--|-=-|-. . |..+.+-+++||.+|.. ...-+|.
T Consensus 110 R~~eGYGl~~~----~---------------------------------------i~~~~eg~~LiITvDcGi~a~e~i~ 146 (666)
T 2zxr_A 110 RLEEGYGVLME----R---------------------------------------VPEHLEASDLFLTVDCGITNHAELR 146 (666)
T ss_dssp --------------------------------------------------------------CCEEEESCCC--------
T ss_pred CCCCCCCCCHH----H---------------------------------------HHHHHHCCCEEEEECCCCCCHHHHH
T ss_conf 76568886999----9---------------------------------------9998608998999648823399999
Q ss_pred HHHHCCCEEEEECCCC
Q ss_conf 2343398145403677
Q gi|254780779|r 176 EARRLRIPIVAVVDTN 191 (278)
Q Consensus 176 EA~kl~IPvIaivDTn 191 (278)
.|+.+||-||- .|-.
T Consensus 147 ~a~~~GidvIV-tDHH 161 (666)
T 2zxr_A 147 ELLENGVEVIV-TDHH 161 (666)
T ss_dssp ------CEEEE-ECCC
T ss_pred HHHHCCCEEEE-ECCC
T ss_conf 88867998999-4989
No 34
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=77.16 E-value=4 Score=20.36 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=87.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-EEEE----CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHH
Q ss_conf 8860754776578856210200188-1675----389999999999999998610788169960782357999999-863
Q gi|254780779|r 15 GVQFGHRNFLWNPKMERYIFCERNN-THII----DLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEA-AKR 88 (278)
Q Consensus 15 g~H~Gh~~~~wnPkM~~yI~g~rng-ihII----dL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~-A~~ 88 (278)
+.+.|-.|. -+.+-.++.|.+.| +.|| ..-||...+..|++ .+.+|+.++|+..--...++.... |..
T Consensus 175 ~~~~gi~TG--~~~LD~~~gG~~~G~L~viaarpg~GKT~~al~la~~----~~~~g~~v~~~SlEMs~~el~~R~~s~~ 248 (444)
T 3bgw_A 175 GNITGVPSG--FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN----MSDNDDVVNLHSLEMGKKENIKRLIVTA 248 (444)
T ss_dssp SSCCSBCCS--CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH----HHHTTCEEEEECSSSCTTHHHHHHHHHH
T ss_pred CCCCEEECC--CCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH----HHCCCCCHHCCHHHCCHHHHHHHHHHHH
T ss_conf 997612248--7565777148788876998507998747999999997----5312551310514178879999999985
Q ss_pred CCCEECCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 3983142334587323--42666555677899887630121267746788766556777643443322113595799943
Q gi|254780779|r 89 SAQYCVNSKWLGGMMT--NWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVD 166 (278)
Q Consensus 89 ~~~~yV~~RWlGG~LT--N~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d 166 (278)
++.++-.-|--.+.++ .|..+...+..+..+.-... .....+--+.....| ++.+..+| .|++||| |
T Consensus 249 s~v~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~---~~~~~~~~------~~~~vvi-D 317 (444)
T 3bgw_A 249 GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIF-DKAGQSVNYIWSKTR---QTKRKNPG------KRVIVMI-D 317 (444)
T ss_dssp SCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEE-CCSSCBHHHHHHHHH---HHHHHSCS------SCEEEEE-E
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHH---HHHHHCCC------CCCEEEE-E
T ss_conf 48986777630122348999999999878862876345-787654699999998---77650489------7638996-0
Q ss_pred C-------CC-C--CHHHHH--------HHHCCCEEEEECCCCCCCHHCCCEEEECCC
Q ss_conf 8-------87-7--123212--------343398145403677670011520321577
Q gi|254780779|r 167 T-------NR-E--KLAIQE--------ARRLRIPIVAVVDTNSNPDLVDYVIPGNDD 206 (278)
Q Consensus 167 ~-------~~-e--~~Av~E--------A~kl~IPvIaivDTn~dp~~idypIP~NDd 206 (278)
- .. + ..+|.+ |..++||||.++-.|-+...-+-..|.-.|
T Consensus 318 yl~l~~~~~~~~~~~~~~~~i~~~Lk~lA~e~~v~vi~lsQlnR~~~~r~~~~P~lsd 375 (444)
T 3bgw_A 318 YLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSD 375 (444)
T ss_dssp CSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGG
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHH
T ss_conf 7654367888878999999999999999998099689963368531114789877776
No 35
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343}
Probab=76.55 E-value=4.2 Score=20.25 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=12.2
Q ss_pred EEEEECCHHHHHHHHHHHHHCCCEEC
Q ss_conf 69960782357999999863398314
Q gi|254780779|r 69 ILFVATKSQASDCVMEAAKRSAQYCV 94 (278)
Q Consensus 69 ILFVgTk~~~~~~i~~~A~~~~~~yV 94 (278)
|+++.+.......+-+.+...|.|.|
T Consensus 73 Iii~~~~~~~~~~~i~~~~~~gipvv 98 (304)
T 3gbv_A 73 VMFAPTVPQYTKGFTDALNELGIPYI 98 (304)
T ss_dssp EEECCSSGGGTHHHHHHHHHHTCCEE
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEE
T ss_conf 99946651405999999997599399
No 36
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=75.09 E-value=3.1 Score=21.13 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCEEEEECCCCCCCHHCC
Q ss_conf 71232123433981454036776700115
Q gi|254780779|r 170 EKLAIQEARRLRIPIVAVVDTNSNPDLVD 198 (278)
Q Consensus 170 e~~Av~EA~kl~IPvIaivDTn~dp~~id 198 (278)
-...+.||.-+|+|+|-+=|+..-|..++
T Consensus 282 Sss~i~Ea~~lg~P~I~ir~~~eRqeg~~ 310 (376)
T 1v4v_A 282 SGGLQEEGAALGVPVVVLRNVTERPEGLK 310 (376)
T ss_dssp CHHHHHHHHHTTCCEEECSSSCSCHHHHH
T ss_pred CCHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf 82199999981997898178766888997
No 37
>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125}
Probab=74.23 E-value=4.8 Score=19.87 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=16.5
Q ss_pred CCEEEEECCCCC---CHHHHHHHHC-CCEEEEECCCCCCCHHCCC
Q ss_conf 957999438877---1232123433-9814540367767001152
Q gi|254780779|r 159 PDLMFVVDTNRE---KLAIQEARRL-RIPIVAVVDTNSNPDLVDY 199 (278)
Q Consensus 159 P~~iiv~d~~~e---~~Av~EA~kl-~IPvIaivDTn~dp~~idy 199 (278)
+++||+.+-..- ..|++++.+. .|++||+ +++|..+.+
T Consensus 188 ~~~I~~~~d~~a~g~~~al~~~g~~~~v~vvg~---d~~~~~~~~ 229 (305)
T 3g1w_A 188 LAGIFATEANGGVGVGDAVRLESRAGEIQIISF---DTDKGTLDL 229 (305)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEE---SCCHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEE---CCCHHHHHH
T ss_conf 607995584899999999997599998299994---898999999
No 38
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} SCOP: c.93.1.1 PDB: 1tm2_A 3ejw_A*
Probab=73.82 E-value=4.9 Score=19.81 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=14.5
Q ss_pred CCEEEEECCCCC---CHHHHHHHHCCCEEEEE
Q ss_conf 957999438877---12321234339814540
Q gi|254780779|r 159 PDLMFVVDTNRE---KLAIQEARRLRIPIVAV 187 (278)
Q Consensus 159 P~~iiv~d~~~e---~~Av~EA~kl~IPvIai 187 (278)
|++||..+-.-- ..|++++.+-.+.++++
T Consensus 190 ~daI~~~~d~~a~ga~~Al~~~g~~~~~~v~~ 221 (316)
T 1tjy_A 190 LDAIIAPDANALPAAAQAAENLKRNNLAIVGF 221 (316)
T ss_dssp CCEEEECSTTHHHHHHHHHHHTTCCSCEEEEB
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 84899898689999999999679899889998
No 39
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=73.39 E-value=5 Score=19.74 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=35.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCC------EEEEECCCC----CCCHHCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 35957999438877123212343398------145403677----670011520321577268999999999
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRI------PIVAVVDTN----SNPDLVDYVIPGNDDSSRSIALFCDLV 218 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~I------PvIaivDTn----~dp~~idypIP~NDds~~si~l~~~~i 218 (278)
..|+++|+.+-.--.-+++.+..+|+ .|+|+-|+. ..|..-++-+|...=+..++++++..+
T Consensus 191 ~~~~aii~~~d~~a~g~~~~l~~~g~~ip~dv~vvg~d~~~~~~~~~p~ltti~~~~~~~g~~av~~L~~~i 262 (295)
T 3hcw_A 191 NIKQAIISLDAMLHLAILSVLYELNIEIPKDVMTATFNDSYLTEIASPPQTCIDIKPRMLGQQAGSAILNIL 262 (295)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHTTCCTTTTEEEEEECCSHHHHTSSSCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 776434557789999999999986998894614441488689971389936999799999999999999997
No 40
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367}
Probab=72.19 E-value=5.4 Score=19.56 Aligned_cols=35 Identities=9% Similarity=-0.023 Sum_probs=22.9
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCC
Q ss_conf 1359579994388771232123433981------4540367
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDT 190 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDT 190 (278)
...|+++|+.+..--..+++-++.+|+. |+|+-|+
T Consensus 179 ~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~di~vi~~d~~ 219 (276)
T 3jy6_A 179 NDQKTVAFALKERWLLEFFPNLIISGLIDNQTVTATGFADT 219 (276)
T ss_dssp SSSCEEEEESSHHHHHHHSHHHHHSSSCCSSSEEEEEBCCC
T ss_pred CCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCH
T ss_conf 01433010066799999999999869999994799998884
No 41
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=71.48 E-value=5.1 Score=19.70 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=31.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCC--CE----EEEECCCCC----CCHHCCCEEEECCCCHHHHHHHHHH
Q ss_conf 3595799943887712321234339--81----454036776----7001152032157726899999999
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLR--IP----IVAVVDTNS----NPDLVDYVIPGNDDSSRSIALFCDL 217 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~--IP----vIaivDTn~----dp~~idypIP~NDds~~si~l~~~~ 217 (278)
..|+++|+.+-..-.-+++.+...| || |+|+-|+.. +|..-++-+|...=+.+++++++..
T Consensus 196 ~~~~ai~~~~d~~a~g~~~al~~~g~~vp~dv~vig~d~~~~~~~~~p~ltti~~~~~~~g~~a~~~L~~~ 266 (303)
T 3kke_A 196 DGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIVGINTTWVSDTVYPALTTVRLPLQRLGEVAADVLMEH 266 (303)
T ss_dssp TSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCCHHHHHSSSCCEEEECCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 79848996677889999999998398655561699757878997248995699829999999999999999
No 42
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=70.79 E-value=5.8 Score=19.36 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=12.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 95799943887712321234339814540
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
.+.++++....+..........++|+|.+
T Consensus 127 ~~~~ii~~~~~~~~~~~~~~~~~~p~v~v 155 (355)
T 3e3m_A 127 PEAMVLSYDGHTEQTIRLLQRASIPIVEI 155 (355)
T ss_dssp CSEEEEECSCCCHHHHHHHHHCCSCEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCE
T ss_conf 65421234654267899987427985100
No 43
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=70.74 E-value=4.4 Score=20.10 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=20.4
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 13595799943887712321234339814540
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
++.-+.+|+-+... .-++.|.++|||||.-
T Consensus 42 s~~t~~LV~g~~~g--sK~~kA~~~gI~Ii~e 71 (92)
T 1l7b_A 42 SRKTSYLVVGENPG--SKLEKARALGVPTLTE 71 (92)
T ss_dssp SSSCCCBEECSSSS--TTHHHHHCSSSCCEEH
T ss_pred ECCEEEEEECCCCC--HHHHHHHHHCCCEECH
T ss_conf 27760899889988--0999999909949639
No 44
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435}
Probab=70.00 E-value=4.3 Score=20.17 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=33.1
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHCCC--E----EEEECCCC----CCCHHCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 21135957999438877123212343398--1----45403677----670011520321577268999999999
Q gi|254780779|r 154 DMGGLPDLMFVVDTNREKLAIQEARRLRI--P----IVAVVDTN----SNPDLVDYVIPGNDDSSRSIALFCDLV 218 (278)
Q Consensus 154 ~m~~lP~~iiv~d~~~e~~Av~EA~kl~I--P----vIaivDTn----~dp~~idypIP~NDds~~si~l~~~~i 218 (278)
.....|+++|+.|-.--.-+++.++.+|+ | |||+-|+. ..|...++-+|...=+.+++++++..+
T Consensus 198 ~~~~~~~ai~~~~d~~A~g~~~al~~~g~~iP~Dv~vig~d~~~~~~~~~p~lttv~~~~~~~g~~av~~l~~~i 272 (305)
T 3huu_A 198 DASHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTSFLTENATPSQTSVNINPDVLGFTAGNTIIDVL 272 (305)
T ss_dssp ---CCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCSHHHHTSSSCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 579997655456647777799999984999887259982288589971489835998399999999999999997
No 45
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=69.26 E-value=6.2 Score=19.15 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 9999999861078816996078235799999986
Q gi|254780779|r 54 KALQVISDTVARGGRILFVATKSQASDCVMEAAK 87 (278)
Q Consensus 54 ~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~ 87 (278)
.|...+.+ ..|++||+||+...++...+..+.
T Consensus 11 ~a~~~~~~--~~~kkilvIGaG~~~~~~a~~L~~ 42 (144)
T 3oj0_A 11 IVYDIVRK--NGGNKILLVGNGMLASEIAPYFSY 42 (144)
T ss_dssp HHHHHHHH--HCCCEEEEECCSHHHHHHGGGCCT
T ss_pred HHHHHHHH--CCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 99999986--399999999978999999999985
No 46
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}
Probab=67.81 E-value=6.7 Score=18.96 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=31.5
Q ss_pred HHHHCCCC---CEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCH---HCCCEEE
Q ss_conf 32211359---579994388771232123433981454036776700---1152032
Q gi|254780779|r 152 IRDMGGLP---DLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPD---LVDYVIP 202 (278)
Q Consensus 152 i~~m~~lP---~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~---~idypIP 202 (278)
++.+.--| ++|+|=|.. .-|..|+.+||++|++.+.+.+.. ..||.|+
T Consensus 181 ~~~l~~~p~~~~~v~vgDs~---~Di~aA~~aG~~~i~v~~~~~~~~~~~~ad~vi~ 234 (250)
T 3l5k_A 181 AKRFSPPPAMEKCLVFEDAP---NGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLN 234 (250)
T ss_dssp HHTSSSCCCGGGEEEEESSH---HHHHHHHHTTCEEEECCCTTSCGGGSTTSSEECS
T ss_pred HHHHCCCCCCCEEEEECCCH---HHHHHHHHCCCEEEEECCCCCCHHHHCCCCEEEC
T ss_conf 99948598622389976878---8799999869989998899998778469999989
No 47
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=67.54 E-value=6.7 Score=18.93 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCE-EEEECCCCCCCHHCCCEEEEC
Q ss_conf 359579994388771232123433981-454036776700115203215
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIP-IVAVVDTNSNPDLVDYVIPGN 204 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IP-vIaivDTn~dp~~idypIP~N 204 (278)
..|+++|+.+-.-=.-+++.++..|++ -|.++-.+++|..+++.-++.
T Consensus 187 ~~~~ai~~~~D~~a~g~~~al~~~g~~~~i~v~g~d~~~~~~~~i~~g~ 235 (313)
T 3m9w_A 187 NKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGT 235 (313)
T ss_dssp TCCCEEEESSHHHHHHHHHHHHTTTCTTTSEECCCSCCHHHHHHHHHTS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCC
T ss_conf 5650899668589999999999779999856999789999999986599
No 48
>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A*
Probab=65.50 E-value=7.4 Score=18.67 Aligned_cols=33 Identities=9% Similarity=-0.015 Sum_probs=17.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCC---CEEEEECCC
Q ss_conf 595799943887712321234339---814540367
Q gi|254780779|r 158 LPDLMFVVDTNREKLAIQEARRLR---IPIVAVVDT 190 (278)
Q Consensus 158 lP~~iiv~d~~~e~~Av~EA~kl~---IPvIaivDT 190 (278)
.|+++|+.+-.--.-+++-++..| |+++|+-++
T Consensus 191 ~~~ai~~~~d~~a~g~~~al~~~g~~~i~i~g~d~~ 226 (290)
T 2fn9_A 191 EIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDGA 226 (290)
T ss_dssp TCCEEEESSHHHHHHHHHHHHHTTCTTCEEECCBCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 644999878299999999999849976746066797
No 49
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=64.83 E-value=7.6 Score=18.59 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=15.8
Q ss_pred CCEEEEECCCCCC---HHHHHHHHC-CCEEEEECCC
Q ss_conf 9579994388771---232123433-9814540367
Q gi|254780779|r 159 PDLMFVVDTNREK---LAIQEARRL-RIPIVAVVDT 190 (278)
Q Consensus 159 P~~iiv~d~~~e~---~Av~EA~kl-~IPvIaivDT 190 (278)
++++|..+-.--. .|++++.+. .|.++|+-++
T Consensus 183 i~~i~~~~d~~a~ga~~Al~~~g~~~~i~i~g~d~~ 218 (313)
T 2h3h_A 183 LDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTT 218 (313)
T ss_dssp CCEEEECSTTHHHHHHHHHHHTTCTTTSEEEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 848997784689999999997799989747995798
No 50
>3fkj_A Putative phosphosugar isomerases; NP_459564.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=64.81 E-value=7.6 Score=18.59 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=32.1
Q ss_pred CCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEEC
Q ss_conf 9579994388771----23212343398145403677670--0115203215
Q gi|254780779|r 159 PDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPGN 204 (278)
Q Consensus 159 P~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~N 204 (278)
.++||.+....+. .|++.|+..|.++|+|++.-..| ...|+.|+.+
T Consensus 90 ~tLVI~iSqSG~T~etv~al~~ak~~ga~~i~iT~~~~S~la~~ad~~i~~~ 141 (347)
T 3fkj_A 90 NSVVILASQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQ 141 (347)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECB
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEECCCCEEEEE
T ss_conf 9789998589998689999999998298366312568875102157237875
No 51
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.38 E-value=7.7 Score=18.54 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=21.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 113595799943887712321234339814540
Q gi|254780779|r 155 MGGLPDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 155 m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
+++.-|.||+=+ .....-++.|..+|||||.-
T Consensus 57 Vs~kT~~LV~G~-~~g~sK~~kA~~lgI~Ii~E 88 (112)
T 2ebu_A 57 VSKKTNYLVMGR-DSGQSKSDKAAALGTKIIDE 88 (112)
T ss_dssp CCSSCCEEEECS-SCCSHHHHHHHHHTCEEEEH
T ss_pred CCCCCCEEEECC-CCCHHHHHHHHHCCCCEECH
T ss_conf 566856899818-99978999999809968369
No 52
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=62.65 E-value=8.3 Score=18.34 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=19.2
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHCCCE
Q ss_conf 11359579994388771232123433981
Q gi|254780779|r 155 MGGLPDLMFVVDTNREKLAIQEARRLRIP 183 (278)
Q Consensus 155 m~~lP~~iiv~d~~~e~~Av~EA~kl~IP 183 (278)
....|++||+.+-..-.-+++.+..+|+-
T Consensus 185 ~~~~~~aii~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 185 LKNTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp SSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 17886543317849999999999987986
No 53
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=62.22 E-value=2.2 Score=22.12 Aligned_cols=135 Identities=10% Similarity=0.208 Sum_probs=65.5
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHH-----H
Q ss_conf 16753899999999999999986107881699607823579999998633983142334587323426665556-----7
Q gi|254780779|r 40 THIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSI-----Q 114 (278)
Q Consensus 40 ihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si-----~ 114 (278)
-+.+|.+|-+..|..-..-++....+.+. -+ ..+...+-.+..+.. +.+-.-||-|..++-+= .
T Consensus 12 ~~~LdFEkpI~eLe~kI~eL~~~~~~~~~-d~---~~ei~~Le~k~~~l~-------~~iy~~Ls~wq~Vq~ARhp~RP~ 80 (327)
T 2f9i_A 12 GSMLDFEKPLFEIRNKIESLKESQDKNDV-DL---QEEIDMLEASLERET-------KKIYTNLKPWDRVQIARLQERPT 80 (327)
T ss_dssp SCCCGGGHHHHHHHHHHHCC---------------CTTHHHHHHHHHHHH-------HHHHHSCCHHHHHHHHTBTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCC-CH---HHHHHHHHHHHHHHH-------HHHHCCCCHHHHHHHHHCCCCCC
T ss_conf 66567425799999999998745505678-77---999999999999999-------99870899999999974789997
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC--------------------HHH
Q ss_conf 789988763012126774678876655677764344332211359579994388771--------------------232
Q gi|254780779|r 115 KLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK--------------------LAI 174 (278)
Q Consensus 115 ~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~--------------------~Av 174 (278)
.+..++...+ .|..|.- .|....=..-++|+......|-+|+-.+..++. -++
T Consensus 81 ~~DyI~~ifd-df~eLhG------DR~~~dD~aii~g~a~~~g~~v~vig~~kg~~~~e~~~~nfGm~~pegyrKA~R~m 153 (327)
T 2f9i_A 81 TLDYIPYIFD-SFMELHG------DRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLM 153 (327)
T ss_dssp HHHHHHHHCE-EEEECCC------CSSSCCCTTEEEEEEEETTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CCEEEEC------CCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHHH
T ss_conf 7999987346-6478505------65567662244543540780589997505766541103228999979999999999
Q ss_pred HHHHHCCCEEEEECCCCC
Q ss_conf 123433981454036776
Q gi|254780779|r 175 QEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 175 ~EA~kl~IPvIaivDTn~ 192 (278)
+-|.++|+|||.++||-.
T Consensus 154 ~~Aekf~~Piit~IDTpG 171 (327)
T 2f9i_A 154 KQAEKFNRPIFTFIDTKG 171 (327)
T ss_dssp HHHHHTTCCEEEEEEESC
T ss_pred HHHHHCCCCEEEEECCCC
T ss_conf 999974997799842798
No 54
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=62.07 E-value=8.5 Score=18.27 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 5957999438877123212343398145403677670
Q gi|254780779|r 158 LPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNP 194 (278)
Q Consensus 158 lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp 194 (278)
.+|.++++........+.+....++|++.+.+.....
T Consensus 122 ~vdgii~~~~~~~~~~~~~l~~~~~p~v~~~~~~~~~ 158 (348)
T 3bil_A 122 GVDGIICVPNEECANQLEDLQKQGMPVVLVDRELPGD 158 (348)
T ss_dssp TCSCEEECCCGGGHHHHHHHHHC-CCEEEESSCCSCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 6033641473035678999986189868740123467
No 55
>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn}
Probab=61.72 E-value=8.2 Score=18.39 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=18.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCE-EEEECCCCCCCHHCCCE
Q ss_conf 9579994388771232123433981-45403677670011520
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIP-IVAVVDTNSNPDLVDYV 200 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IP-vIaivDTn~dp~~idyp 200 (278)
+++||..+-..=.-+++.++..|++ -|.++-.|++|..+++.
T Consensus 198 i~~I~~~nd~~a~g~~~al~~~g~~~~i~vvG~D~~~~~~~~i 240 (332)
T 2rjo_A 198 IKGVWAANDDMALGAIEALRAEGLAGQIPVTGMDGTQPGLVAI 240 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCBTTBCEECSBCCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH
T ss_conf 5199967978999999999976999992899989979999999
No 56
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=61.53 E-value=8.7 Score=18.21 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=35.0
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCC------EEEEECCCC----CCCHHCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 135957999438877123212343398------145403677----670011520321577268999999999
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRI------PIVAVVDTN----SNPDLVDYVIPGNDDSSRSIALFCDLV 218 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~I------PvIaivDTn----~dp~~idypIP~NDds~~si~l~~~~i 218 (278)
...|++||+.+-..-.-+++.+..+|+ .++++-|+. .+|..-++-+|..+=+.+++++++..+
T Consensus 190 ~~~~~ai~~~~d~~a~~~~~~l~~~g~~vP~di~v~g~d~~~~~~~~~p~ltti~~~~~~~g~~a~~~l~~~i 262 (292)
T 3k4h_A 190 QQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDVNIYQLGYEAAKALVDKV 262 (292)
T ss_dssp SSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCCHHHHHSSSCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 9998289973718789999999982898872033156686788971489943997199999999999999998
No 57
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=61.36 E-value=8.8 Score=18.19 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 595799943887712321234339814540367767001152032157726899999999999
Q gi|254780779|r 158 LPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVAS 220 (278)
Q Consensus 158 lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ 220 (278)
..|.++++........+.+....+||++.+...... ...++..+=| .++.++.+..+.+
T Consensus 124 ~~dg~Ii~~~~~~~~~~~~l~~~~~p~v~i~~~~~~-~~~~~V~~d~---~~~~~~a~~~L~~ 182 (344)
T 3kjx_A 124 RPSGVIIAGLEHSEAARAMLDAAGIPVVEIMDSDGK-PVDAMVGISH---RRAGREMAQAILK 182 (344)
T ss_dssp CCSEEEEECSCCCHHHHHHHHHCSSCEEEEEECSSC-CSSEEEEECH---HHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHCCCCCEEEEECCCCC-CCCCEEEECH---HHHHHHHHHHHHH
T ss_conf 887047751232113566652279868999267888-8786774078---9999999999998
No 58
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha chain; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=60.81 E-value=2.4 Score=21.86 Aligned_cols=138 Identities=16% Similarity=0.287 Sum_probs=59.1
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHH-----H
Q ss_conf 16753899999999999999986107881699607823579999998633983142334587323426665556-----7
Q gi|254780779|r 40 THIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSI-----Q 114 (278)
Q Consensus 40 ihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si-----~ 114 (278)
.+.+|-||-+.-|+.=..-++.....+.. .=+........+=++..+....-| +-||-|..++-+= .
T Consensus 23 ~~yLdFEkpi~eLe~kI~eL~~~~~~~~~-~~~d~~~ei~~Le~k~~~~~~~iy-------~~Lt~wq~Vq~ARhP~RP~ 94 (339)
T 2f9y_A 23 LNFLDFEQPIAELEAKIDSLTAGSRQDEK-LDINIDEEVHRLREKSVELTRKIF-------ADLGAWQIAQLARHPQRPY 94 (339)
T ss_dssp -CCCSTTHHHHHTTTTTTC----------------CCGGGGTHHHHHTTTTHHH-------HTCCHHHHHHHHTCTTCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHCCCCCC
T ss_conf 53357232799999999999866512653-468889999999999999999987-------3799999999971899965
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC--------------------CHHH
Q ss_conf 78998876301212677467887665567776434433221135957999438877--------------------1232
Q gi|254780779|r 115 KLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE--------------------KLAI 174 (278)
Q Consensus 115 ~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e--------------------~~Av 174 (278)
-+..++...+ .|..|-- .|....=..-.||+..+...|-+|+--+-..+ .-.+
T Consensus 95 ~~DyI~~lf~-df~eL~G------Dr~~~dD~aii~G~ar~~g~~v~vig~~kg~~~~~~~~~nfG~~~pegyrKA~R~m 167 (339)
T 2f9y_A 95 TLDYVRLAFD-EFDELAG------DRAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLM 167 (339)
T ss_dssp HHHHHHHHCE-EEEECCC------CSSSCCCTTEEEEEEEETTEEEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCC-CEEEECC------CCCCCCCHHHHHHEEEEECCEEEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 7999975467-4699315------76556544243120365055379986226776232100268888879999999999
Q ss_pred HHHHHCCCEEEEECCCCC
Q ss_conf 123433981454036776
Q gi|254780779|r 175 QEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 175 ~EA~kl~IPvIaivDTn~ 192 (278)
+-|.+.|||||.+|||-.
T Consensus 168 ~laekf~iPIit~vDTpG 185 (339)
T 2f9y_A 168 QMAERFKMPIITFIDTPG 185 (339)
T ss_dssp HHHHHTTCCEEEEEEESC
T ss_pred HHHHHCCCCEEEEEECCC
T ss_conf 999973996699852798
No 59
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.07 E-value=4.4 Score=20.12 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHCCCEEEE
Q ss_conf 8771232123433981454
Q gi|254780779|r 168 NREKLAIQEARRLRIPIVA 186 (278)
Q Consensus 168 ~~e~~Av~EA~kl~IPvIa 186 (278)
.....-++.|+.+|||||.
T Consensus 58 ~~~~~K~~kA~~~gI~iV~ 76 (113)
T 2cok_A 58 EKMNKKMEEVKEANIRVVS 76 (113)
T ss_dssp HHCCHHHHHHHHTTCCEEC
T ss_pred CCCCHHHHHHHHCCCEEEE
T ss_conf 3666799999987992961
No 60
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=59.18 E-value=9.5 Score=17.95 Aligned_cols=39 Identities=10% Similarity=0.255 Sum_probs=21.5
Q ss_pred HHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHCCCEECC
Q ss_conf 999986107881-699607823579999998633983142
Q gi|254780779|r 57 QVISDTVARGGR-ILFVATKSQASDCVMEAAKRSAQYCVN 95 (278)
Q Consensus 57 ~~i~~i~~~gg~-ILFVgTk~~~~~~i~~~A~~~~~~yV~ 95 (278)
..+..+..++-. |++..........+-+.|.+.|.|.|.
T Consensus 48 ~~i~~~i~~~vdgiIi~~~~~~~~~~~~~~a~~~giPvV~ 87 (306)
T 8abp_A 48 NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIA 87 (306)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEE
T ss_conf 9999999769998999468842249999999975997899
No 61
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=58.76 E-value=9.7 Score=17.91 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999861078816996078235799999986339831423345873234266655567789988763012
Q gi|254780779|r 47 QTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKE 126 (278)
Q Consensus 47 kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~ 126 (278)
.+--++......+..+...|.+||++.-....-++++.+....|..|. |.-|.+...-. .+ ........
T Consensus 106 ~~S~K~~~l~~ll~~~~~~~~kvlIfsq~~~~Ldlle~~l~~~~~~~~--rldG~t~~~~r-----~~----~~~~~~~~ 174 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIK--RYDGHSIKSAA-----AA----NDFSCTVH 174 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEE--ESSSCCC----------------CCSEEEE
T ss_pred HCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEE--EEECCCCHHHH-----HH----HHHHCCCC
T ss_conf 658209999999999874697599997868999999999997797089--96499977888-----88----87602865
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------CHHHHHHHHCC----CEEEEECCCCC
Q ss_conf ---12677467887665567776434433221135957999438877-------12321234339----81454036776
Q gi|254780779|r 127 ---NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE-------KLAIQEARRLR----IPIVAVVDTNS 192 (278)
Q Consensus 127 ---~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e-------~~Av~EA~kl~----IPvIaivDTn~ 192 (278)
+..-++. .--|+- + .-+|.||++|+.-| .+|..-|.+.| +||+-++=+|+
T Consensus 175 ~~~~l~s~~~--------------~~~gln-l-~~ad~VI~~D~~wNP~~~~~~~qa~~r~~R~Gq~k~v~V~RLv~~~T 238 (328)
T 3hgt_A 175 LFSSEGINFT--------------KYPIKS-K-ARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp EEESSCCCTT--------------TSCCCC-C-SCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CHHHHHHHHC--------------CCCCCC-C-CCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCC
T ss_conf 0279989861--------------787776-6-44888999589889897469999998763368984558999970899
Q ss_pred CCHHCCCEEEE
Q ss_conf 70011520321
Q gi|254780779|r 193 NPDLVDYVIPG 203 (278)
Q Consensus 193 dp~~idypIP~ 203 (278)
-+.+.|..|.
T Consensus 239 -iEh~~l~~~~ 248 (328)
T 3hgt_A 239 -IDHCRLFFGK 248 (328)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHCC
T ss_conf -9999998112
No 62
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initiative; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2
Probab=58.32 E-value=9.9 Score=17.86 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=35.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHC--CCEEEEECCC------------CCCCHHCCCEEEE-CC
Q ss_conf 59579994388771232123433--9814540367------------7670011520321-57
Q gi|254780779|r 158 LPDLMFVVDTNREKLAIQEARRL--RIPIVAVVDT------------NSNPDLVDYVIPG-ND 205 (278)
Q Consensus 158 lP~~iiv~d~~~e~~Av~EA~kl--~IPvIaivDT------------n~dp~~idypIP~-ND 205 (278)
-|+++|+.=++--.+...-+.+. ++++||+|++ .-+|+.|++-+.| |-
T Consensus 143 ~P~A~lln~TNP~~i~t~a~~r~~p~~kviGlC~~~~~~r~~lA~~Lgv~~~~v~~~~~GiNH 205 (450)
T 1s6y_A 143 CPDAWLINFTNPAGMVTEAVLRYTKQEKVVGLCNVPIGMRMGVAKLLGVDADRVHIDFAGLNH 205 (450)
T ss_dssp CTTCEEEECSSSHHHHHHHHHHHCCCCCEEECCSHHHHHHHHHHHHHTSCGGGEEEEEEEETT
T ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCCCHHHCEEEEECCCC
T ss_conf 998499997886899999999868998777117751999999999949897765432556787
No 63
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=57.26 E-value=8.6 Score=18.25 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=33.4
Q ss_pred HHHHHHHHHH--HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 6778998876--30121267746788766556777643443322113595799
Q gi|254780779|r 113 IQKLRDLEEL--LNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMF 163 (278)
Q Consensus 113 i~~l~~l~~~--~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ii 163 (278)
+.++++|... ..|+.-.-+-...-.+..++.||.+.+||= +|++.|.--|
T Consensus 13 ldKiREY~~Ksk~~Gg~vDa~Pe~~kel~~el~kL~~~YGgg-Dmt~FP~FkF 64 (77)
T 2cly_C 13 VDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGKA-DMNTFPNFTF 64 (77)
T ss_dssp HHHHHHHHHHHTCCSSSSSCCTHHHHHHHHHHHHHHHHHCSS-CTTSCCCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CHHHCCCCCC
T ss_conf 999999997514789977899899999999999999996788-5523868677
No 64
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=56.68 E-value=10 Score=17.68 Aligned_cols=29 Identities=21% Similarity=0.083 Sum_probs=11.0
Q ss_pred CCEEEEECCCCCC---HHHHHHHHCCCEEEEE
Q ss_conf 9579994388771---2321234339814540
Q gi|254780779|r 159 PDLMFVVDTNREK---LAIQEARRLRIPIVAV 187 (278)
Q Consensus 159 P~~iiv~d~~~e~---~Av~EA~kl~IPvIai 187 (278)
++++|+.+-.--. .|++++.+-.+.++|+
T Consensus 192 ~~~i~~~~d~~a~g~~~al~~~g~~dv~vvg~ 223 (291)
T 3l49_A 192 VGAIWACWDVPMIGATQALQAAGRTDIRTYGV 223 (291)
T ss_dssp CCEEEESSHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 77699668789999999999839998569999
No 65
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=56.05 E-value=6 Score=19.24 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=23.7
Q ss_pred CCCCCEEEEECCCCCCHHHHHHH----HCCCEEEEECCC
Q ss_conf 13595799943887712321234----339814540367
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEAR----RLRIPIVAVVDT 190 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~----kl~IPvIaivDT 190 (278)
..+||+++|=.-..--.++.++. .++||+|||+--
T Consensus 80 ~~~PDLilIDGGkgQl~~a~~~l~~~~~~~i~ii~iaK~ 118 (226)
T 3c65_A 80 LPLPDLIIIDGGKGHLSAVRDVLENELGLDVPLAGLAKD 118 (226)
T ss_dssp CCCCSEEEESSCHHHHHHHHHHHHHTSCCCCCEEEC---
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 999998997898899999999999747888544430245
No 66
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=55.87 E-value=7.5 Score=18.62 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=26.6
Q ss_pred CCEEEEECCCCCC---HHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 9579994388771---23212343398145403677670
Q gi|254780779|r 159 PDLMFVVDTNREK---LAIQEARRLRIPIVAVVDTNSNP 194 (278)
Q Consensus 159 P~~iiv~d~~~e~---~Av~EA~kl~IPvIaivDTn~dp 194 (278)
.+-|+|.+...+. ..+++|..+|..|+-+.|.-+..
T Consensus 120 i~~liv~G~~t~~CV~~Ta~~a~~~G~~v~vv~Da~~s~ 158 (180)
T 1im5_A 120 VKRVYICGVATEYCVRATALDALKHGFEVYLLRDAVKGI 158 (180)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECS
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 998999861777569999999997799899965234799
No 67
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=55.48 E-value=11 Score=17.56 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=10.7
Q ss_pred CHHHHHHHHCCCEEEEECCC
Q ss_conf 12321234339814540367
Q gi|254780779|r 171 KLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 171 ~~Av~EA~kl~IPvIaivDT 190 (278)
...+.||--+|+|+|-+-|.
T Consensus 291 ss~i~Ea~~lg~P~Inlr~~ 310 (375)
T 3beo_A 291 GGVQEEAPSLGVPVLVLRDT 310 (375)
T ss_dssp HHHHHHHHHHTCCEEECSSC
T ss_pred HHHHHHHHHHCCCEEEECCC
T ss_conf 44788799709988980787
No 68
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile 630}
Probab=54.64 E-value=11 Score=17.47 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=34.1
Q ss_pred CCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEEC
Q ss_conf 9579994388771----23212343398145403677670--0115203215
Q gi|254780779|r 159 PDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPGN 204 (278)
Q Consensus 159 P~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~N 204 (278)
.+++|.+....+. .|++.|+..|.++|+|+++...| ...|+.|+.+
T Consensus 83 ~~lvI~iS~SG~T~eti~a~~~a~~~ga~~iaiT~~~~S~la~~ad~~i~~~ 134 (352)
T 3g68_A 83 NTLVVGVSQGGSSYSTYNAMKLAEDKGCKIASMAGCKNALIDEISDYILTVN 134 (352)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCSEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 9789997899997899999999987797165244777782110056421025
No 69
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=53.61 E-value=12 Score=17.37 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=30.5
Q ss_pred CCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCCH-HCCCEEEEC
Q ss_conf 9579994388771----232123433981454036776700-115203215
Q gi|254780779|r 159 PDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNPD-LVDYVIPGN 204 (278)
Q Consensus 159 P~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp~-~idypIP~N 204 (278)
-|++|++....+. .+++.|++.|+|+|+|.+.++++. ..|+.||..
T Consensus 83 ~Dv~i~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~~~~~l~~~aD~~l~~~ 133 (180)
T 1jeo_A 83 DDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGNVVEFADLTIPLE 133 (180)
T ss_dssp TCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCGGGGGCSEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCEEEECC
T ss_conf 998999759998089999999999759979999699997577777888625
No 70
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=53.53 E-value=8.6 Score=18.24 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCE-EEEECCCCCCCHHCCC
Q ss_conf 9579994388771232123433981-4540367767001152
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIP-IVAVVDTNSNPDLVDY 199 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IP-vIaivDTn~dp~~idy 199 (278)
++++|+.+-.--.-+++.++..|+| -|.++-.+.+|...++
T Consensus 194 ~~~i~~~~d~~a~g~~~al~~~g~~~dv~i~g~d~~~~~~~~ 235 (288)
T 1gud_A 194 IKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKM 235 (288)
T ss_dssp CCEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
T ss_conf 605753598899999999997699998499998984999998
No 71
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=52.84 E-value=12 Score=17.29 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=29.3
Q ss_pred HHCCCCCEEEEEC-----CCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 2113595799943-----887712321234339814540367
Q gi|254780779|r 154 DMGGLPDLMFVVD-----TNREKLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 154 ~m~~lP~~iiv~d-----~~~e~~Av~EA~kl~IPvIaivDT 190 (278)
.+...||+++|=. |..=-+|-.-.-.+++|+||+.-+
T Consensus 105 ~L~~~PDvllvDG~Gi~HPR~~GlA~HlGv~l~~PtIGVAK~ 146 (246)
T 3ga2_A 105 KLETEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIAKT 146 (246)
T ss_dssp HCSSCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEESS
T ss_pred HCCCCCCEEEECCCCCCCCCCCCHHHHEEEECCCCEEEEECC
T ss_conf 567899999992862106877645331000039887644133
No 72
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis}
Probab=51.97 E-value=12 Score=17.20 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=36.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 3595799943887712321234339814540367767001152032157726899999999999
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVAS 220 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ 220 (278)
..++.+++.+.......+....+.++|++. +|+++.+...++.-+ |...+..+.+..|.+
T Consensus 118 ~~~~g~i~~~~~~~~~~~~~~~~~~~p~v~-~~~~~~~~~~~~v~~---D~~~~~~~a~~~L~~ 177 (332)
T 2o20_A 118 KQVDGIVYMGSSLDEKIRTSLKNSRTPVVL-VGTIDGDKEIPSVNI---DYHLAAYQSTKKLID 177 (332)
T ss_dssp TTCSEEEECSSCCCHHHHHHHHHHCCCEEE-ESCCCTTSCSCEEEC---CHHHHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCHHHHHHHHCCCCCEEE-ECCCCCCCCCCEEEE---CHHHHHHHHHHHHHH
T ss_conf 497667404555547889987356985898-167678988987985---689999999999998
No 73
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen synthase two rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=51.62 E-value=13 Score=17.16 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=26.6
Q ss_pred CCEEEEECC-CCCCHHHHHHHHCCCEEEEECCCCCCCHH----CCCEEEECC
Q ss_conf 957999438-87712321234339814540367767001----152032157
Q gi|254780779|r 159 PDLMFVVDT-NREKLAIQEARRLRIPIVAVVDTNSNPDL----VDYVIPGND 205 (278)
Q Consensus 159 P~~iiv~d~-~~e~~Av~EA~kl~IPvIaivDTn~dp~~----idypIP~ND 205 (278)
-|+++.... ..-..++.||-..|.|||+- |....++. .-|.++.+|
T Consensus 116 adi~v~ps~~E~~~~~~~EAma~G~pvi~~-~~~g~~e~i~~~~g~l~~~~~ 166 (200)
T 2bfw_A 116 VDFVIIPSYFEPFGLVALEAMCLGAIPIAS-AVGGLRDIITNETGILVKAGD 166 (200)
T ss_dssp CSEEEECCSCCSSCHHHHHHHHTTCEEEEE-SCHHHHHHCCTTTCEEECTTC
T ss_pred CCCCEECCCCCCCCHHHHHHHHCCCCEEEE-CCCCCCEEEECCCEEEECCCC
T ss_conf 476240567678986899999889849996-499871478588579977999
No 74
>2r79_A Periplasmic binding protein; heme transport, transport protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=51.41 E-value=13 Score=17.14 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=22.9
Q ss_pred HHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 86107881699607823579999998633983142334587323426665556778998
Q gi|254780779|r 61 DTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119 (278)
Q Consensus 61 ~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l 119 (278)
.++.-.-.+.|........+. .+.....+.+.+..-+ -.++..+...+..+-++
T Consensus 54 ~i~~l~PDlIi~~~~~~~~~~-~~~~~~~~i~~~~~~~----~~~~~~~~~~i~~~g~~ 107 (283)
T 2r79_A 54 GVLALRPDILIGTEEMGPPPV-LKQLEGAGVRVETLSA----KPDLEALESNLKKLGDW 107 (283)
T ss_dssp HHHTTCCSEEEECTTCCCHHH-HHHHHHTTCCEEECCC----CSSHHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEECCCCCHHH-HHHHHHCCCCEEEECC----CCCHHHHHHHHHHHHHH
T ss_conf 997249996995045453056-7777623871477247----89878888999999998
No 75
>3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=51.39 E-value=13 Score=17.14 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=32.0
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEE
Q ss_conf 957999438877----123212343398145403677670--011520321
Q gi|254780779|r 159 PDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPG 203 (278)
Q Consensus 159 P~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~ 203 (278)
-|++|++....+ ..+++.|++.|+|+|+|.+...+| ...|+.++.
T Consensus 93 ~Dv~I~iS~SG~t~e~i~~~~~ak~~g~~vI~IT~~~~s~la~~ad~~l~~ 143 (201)
T 3fxa_A 93 EDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPV 143 (201)
T ss_dssp TCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEC
T ss_conf 888998789999578999999999839808998368999753447867865
No 76
>2etv_A Iron(III) ABC transporter, periplasmic iron- binding protein, putative; TM0189, structural genomics; HET: MLY; 1.70A {Thermotoga maritima MSB8} SCOP: c.92.2.4
Probab=51.14 E-value=13 Score=17.12 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=11.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 95799943887712321234339814540
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
||+||+.+... .........+|||++.+
T Consensus 97 PDlVi~~~~~~-~~~~~~l~~~gipvv~~ 124 (346)
T 2etv_A 97 PDVVFITYVDR-XTAXDIQEXTGIPVVVL 124 (346)
T ss_dssp CSEEEEESCCH-HHHHHHHHHHTSCEEEE
T ss_pred CCEEEECCCCC-HHHHHHHHHCCCCEEEE
T ss_conf 97999578774-03666765228973651
No 77
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=50.70 E-value=11 Score=17.56 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=21.0
Q ss_pred CCCEEEEEC----CCCCCHHHHHHHH---CCCEEEEEC
Q ss_conf 595799943----8877123212343---398145403
Q gi|254780779|r 158 LPDLMFVVD----TNREKLAIQEARR---LRIPIVAVV 188 (278)
Q Consensus 158 lP~~iiv~d----~~~e~~Av~EA~k---l~IPvIaiv 188 (278)
-||.||+.+ |..-..++...++ -+||+.|||
T Consensus 231 ~pDgi~lS~GPG~P~~~~~~i~~i~~~~~~~~PilGIC 268 (379)
T 1a9x_B 231 NPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGIC 268 (379)
T ss_dssp CCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEET
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99989966999995155689999999981699889974
No 78
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=49.48 E-value=14 Score=16.95 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=14.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCEE---EEECCCCCCCH
Q ss_conf 5799943887712321234339814---54036776700
Q gi|254780779|r 160 DLMFVVDTNREKLAIQEARRLRIPI---VAVVDTNSNPD 195 (278)
Q Consensus 160 ~~iiv~d~~~e~~Av~EA~kl~IPv---IaivDTn~dp~ 195 (278)
++||+.+-.--.-+++.++..|+.+ |.++--|.+|.
T Consensus 193 ~ai~~~~d~~a~g~~~al~~~G~~~~~di~i~g~D~~~~ 231 (306)
T 2vk2_A 193 CMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPD 231 (306)
T ss_dssp CEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEEECCHH
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHH
T ss_conf 158735829999999999983999999579999998299
No 79
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=48.38 E-value=14 Score=16.84 Aligned_cols=74 Identities=8% Similarity=0.069 Sum_probs=42.3
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 88169960782357999999863398314233458732342666555677899887630121267746788766556777
Q gi|254780779|r 66 GGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKL 145 (278)
Q Consensus 66 gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl 145 (278)
.++||+|----|...+|.+.-+.+|.+..--+| .+....+ +
T Consensus 24 ~~~I~iiDfGsq~~~lI~R~lrelgv~~eI~p~--------~~~~~~i---~---------------------------- 64 (218)
T 2vpi_A 24 EGAVVILDAGAQYGKVIDRRVRELFVQSEIFPL--------ETPAFAI---K---------------------------- 64 (218)
T ss_dssp TTCEEEEECSTTTTHHHHHHHHHTTCCEEEECT--------TCCHHHH---H----------------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC--------CCCHHHH---H----------------------------
T ss_conf 898999989964889999998716966999889--------9998999---8----------------------------
Q ss_pred HHHHHHHHHHCCCCCEEEEEC-CC-----CCCHHHHHHHHCCCEEEEEC
Q ss_conf 643443322113595799943-88-----77123212343398145403
Q gi|254780779|r 146 KRALDGIRDMGGLPDLMFVVD-TN-----REKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 146 ~k~lgGi~~m~~lP~~iiv~d-~~-----~e~~Av~EA~kl~IPvIaiv 188 (278)
. .-||.||+.. |. .......+....++|+.|||
T Consensus 65 --------~--~~~dgIIlSgGP~~~~~~~~~~~~~~~~~~~~PILGIC 103 (218)
T 2vpi_A 65 --------E--QGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVLGIC 103 (218)
T ss_dssp --------H--HTCSEEEEEC---------CCCCCGGGGTSSCCEEEET
T ss_pred --------H--CCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEH
T ss_conf --------5--39898999099997012433311099983899878717
No 80
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1}
Probab=47.11 E-value=15 Score=16.72 Aligned_cols=64 Identities=6% Similarity=0.003 Sum_probs=39.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCC------EEEEECCCCC----CCHHCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 135957999438877123212343398------1454036776----700115203215772689999999999
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRI------PIVAVVDTNS----NPDLVDYVIPGNDDSSRSIALFCDLVA 219 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~I------PvIaivDTn~----dp~~idypIP~NDds~~si~l~~~~i~ 219 (278)
...|+++|+.+-.--.-+++.+.+.|+ .++++-|+.. +|..-+.-+|...=+..++++++..+.
T Consensus 183 ~~~~~ai~~~~d~~A~g~~~~l~~~g~~ip~dv~vi~~d~~~~~~~~~p~ltti~~~~~~~g~~av~~ll~~i~ 256 (289)
T 3k9c_A 183 PTPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYDDSRLARIPHVQMTTISQDATHMAEAAVDGALAQIS 256 (289)
T ss_dssp SSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTTTTCTTTCCEEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHC
T ss_conf 45866012145899999999999859999975442024877888623898359995999999999999999970
No 81
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=45.81 E-value=13 Score=17.19 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=28.9
Q ss_pred CCCCCEEEEECCCCCC-----HHHHHHHHCCCEEEEECCCCCC--CHHCCCEEEECCCCHHHHH
Q ss_conf 1359579994388771-----2321234339814540367767--0011520321577268999
Q gi|254780779|r 156 GGLPDLMFVVDTNREK-----LAIQEARRLRIPIVAVVDTNSN--PDLVDYVIPGNDDSSRSIA 212 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~-----~Av~EA~kl~IPvIaivDTn~d--p~~idypIP~NDds~~si~ 212 (278)
..+||+++ +|-..-+ -+++|.. +.||+|+++-.+-. ...-.+.+|-|+.+.+.++
T Consensus 77 ~~lPDLil-IDGGkgQL~~a~~~l~~~~-~~i~~i~laK~~~~~~~~~~~~~l~~~~~~l~lLq 138 (159)
T 2nrr_A 77 HPLPNLLF-VDGGIGQVNAAIEALKEIG-KDCPVVGLAKKEETVVFENREIHLPHDHPVLRLLV 138 (159)
T ss_dssp SCCCSEEE-ESSCHHHHHHHHHHHHHTT-CCCCEEEEC----CEEETTEEECCCTTCHHHHHHH
T ss_pred CCCCCEEE-ECCCHHHHHHHHHHHHHCC-CCCCCCCCCCCCHHHCCCCCEECCCCCCHHHHHHH
T ss_conf 99985899-8099899999999999849-96631233452110023686123799998999999
No 82
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=45.46 E-value=16 Score=16.55 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=28.3
Q ss_pred HCCCCCEEEEEC-----CCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 113595799943-----887712321234339814540367
Q gi|254780779|r 155 MGGLPDLMFVVD-----TNREKLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 155 m~~lP~~iiv~d-----~~~e~~Av~EA~kl~IPvIaivDT 190 (278)
+...||+++|=. |..=-+|-.-...+|+|+||+.-+
T Consensus 100 L~~~PdvilvDG~G~~HPR~~GlA~HlGv~l~~PtIGVAK~ 140 (225)
T 2w36_A 100 LRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKS 140 (225)
T ss_dssp CCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEESS
T ss_pred CCCCCCEEEECCCEEECCCCCCHHHEEEEECCCCEEEEECC
T ss_conf 57899999984853336876644220034229887633334
No 83
>3hu5_A Isochorismatase family protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.50A {Desulfovibrio vulgaris str}
Probab=45.34 E-value=12 Score=17.36 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=26.2
Q ss_pred CCEEEEECCCCCC---HHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 9579994388771---232123433981454036776700
Q gi|254780779|r 159 PDLMFVVDTNREK---LAIQEARRLRIPIVAVVDTNSNPD 195 (278)
Q Consensus 159 P~~iiv~d~~~e~---~Av~EA~kl~IPvIaivDTn~dp~ 195 (278)
-+-|+|.+...+. ..++.|..+|..|+-+-|.-++.+
T Consensus 126 i~~vii~G~~T~~CV~~Ta~da~~~G~~V~vv~Da~as~~ 165 (204)
T 3hu5_A 126 VDTLLVSGTQYPNCIRGTAVDAFALDYDVVVVTDACSART 165 (204)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 8328998308776799999999978998999663348999
No 84
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis}
Probab=45.30 E-value=16 Score=16.54 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=39.3
Q ss_pred HHHHHCCCC---CCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 999860886---07547765788562102001881675389999999999999998610788169960782357999999
Q gi|254780779|r 9 RQLLESGVQ---FGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEA 85 (278)
Q Consensus 9 ~~Ll~ag~H---~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~ 85 (278)
+-|++-|+- .|--...+.|...+-+-..-+ ..=+|+++ +.+-.-.+.|+... .......+.
T Consensus 14 e~l~aLG~~~~ivg~~~~~~~P~~~~~~~~vg~-~~~~n~E~--------------i~~l~PDlIi~~~~-~~~~~~~~~ 77 (255)
T 3md9_A 14 EIAYALGAGDEIVARDSTSQQPQAAQKLPDVGY-MRTLNAEG--------------ILAMKPTMLLVSEL-AQPSLVLTQ 77 (255)
T ss_dssp HHHHHTTCGGGEEEECTTCCCSGGGGGSCBCCC-TTSCCHHH--------------HHTTCCSEEEEETT-CSCHHHHHH
T ss_pred HHHHHCCCCCEEEEEECCCCCHHHHHCCCCCCC-CCCCCHHH--------------HHCCCCCEEEECCC-CCCHHHHHH
T ss_conf 999976998848998368778588832880068-88999999--------------94669988996464-441567778
Q ss_pred HHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8633983142334587323426665556778998
Q gi|254780779|r 86 AKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119 (278)
Q Consensus 86 A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l 119 (278)
....+.+++.... .+++..+...+..+-.+
T Consensus 78 ~~~~~~~~~~~~~----~~~~~~~~~~i~~~g~~ 107 (255)
T 3md9_A 78 IASSGVNVVTVPG----QTTPESVAMKINAVATA 107 (255)
T ss_dssp HHHTTCEEEEECC----CCSHHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEECC----CCCHHHHHHHHHHHHHH
T ss_conf 8760783364047----79878988999898786
No 85
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: YES; 1.60A {Streptomyces avermitilis ma-4680}
Probab=43.88 E-value=17 Score=16.40 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEC-----CCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 556777643443322113595799943-----887712321234339814540367
Q gi|254780779|r 140 RKRDKLKRALDGIRDMGGLPDLMFVVD-----TNREKLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 140 r~~~kl~k~lgGi~~m~~lP~~iiv~d-----~~~e~~Av~EA~kl~IPvIaivDT 190 (278)
||..=+...|..+ ...||+++|=. |..--+|-.=.-.+++|+||+.-+
T Consensus 92 RE~p~~l~al~~l---~~~PdlllvDG~Gi~HPR~~GlAsHlGv~l~~PtIGVAK~ 144 (237)
T 3goc_A 92 REIPTVLAALDAL---PCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVAKN 144 (237)
T ss_dssp GTHHHHHHHHHTS---SSCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHHHHHHHHC---CCCCCEEEECCCEEECCCCCCHHHEEEECCCCCEEEEECC
T ss_conf 2018999999856---7899999982860227876664220321059886754144
No 86
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocy_A 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=43.51 E-value=17 Score=16.36 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=34.1
Q ss_pred HHHHHHHHHHCCCCEEEEEECCHHH--HHHHHHHHHHCCCEECCC
Q ss_conf 9999999861078816996078235--799999986339831423
Q gi|254780779|r 54 KALQVISDTVARGGRILFVATKSQA--SDCVMEAAKRSAQYCVNS 96 (278)
Q Consensus 54 ~A~~~i~~i~~~gg~ILFVgTk~~~--~~~i~~~A~~~~~~yV~~ 96 (278)
-|..|+..+...|..|.||..+.+. .....+--...|.|++..
T Consensus 105 Gal~f~~~a~~~Gv~VffVTnR~~~~~~~aT~~NL~~~G~p~~~~ 149 (262)
T 3ocu_A 105 GAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNGVEE 149 (262)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHHHHTCSCCSG
T ss_pred HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 299999999986976999607860547999999998558985024
No 87
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=43.31 E-value=17 Score=16.34 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=12.0
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf 321234339814540367767001
Q gi|254780779|r 173 AIQEARRLRIPIVAVVDTNSNPDL 196 (278)
Q Consensus 173 Av~EA~kl~IPvIaivDTn~dp~~ 196 (278)
.+.||--+|+|+|-+-|+.--|..
T Consensus 312 ~~~EA~~lg~P~Inir~~tERqeg 335 (403)
T 3ot5_A 312 VQEEAPGMGVPVLVLRDTTERPEG 335 (403)
T ss_dssp HHHHGGGTTCCEEECCSSCSCHHH
T ss_pred HHHHHHHHCCCEEEECCCCCCHHH
T ss_conf 777788609978980787768736
No 88
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=42.73 E-value=17 Score=16.29 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=75.7
Q ss_pred CCCCCCCCC-EEEE----CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHCCCEECCCCCCCCCCC
Q ss_conf 210200188-1675----389999999999999998610788169960782357999999-8633983142334587323
Q gi|254780779|r 31 RYIFCERNN-THII----DLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEA-AKRSAQYCVNSKWLGGMMT 104 (278)
Q Consensus 31 ~yI~g~rng-ihII----dL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~-A~~~~~~yV~~RWlGG~LT 104 (278)
.++-|.+.| +.+| ..-||...+..|..... .+|..|||+..-....++.... |..++.++-.-| .|.++
T Consensus 192 ~~~~G~~~g~l~vi~a~pg~GKT~~~~~~a~~~a~---~~g~~v~~~slEm~~~~~~~r~~a~~~~i~~~~~~--~~~~~ 266 (444)
T 2q6t_A 192 QLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL---KEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVR--LGQLT 266 (444)
T ss_dssp HHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCC--GGGCC
T ss_pred HHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH---HCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHH--CCCCC
T ss_conf 88468788848999830466621888878999999---77994999858899999999999875288821222--37762
Q ss_pred --CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-------------
Q ss_conf --42666555677899887630121267746788766556777643443322113595799943887-------------
Q gi|254780779|r 105 --NWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNR------------- 169 (278)
Q Consensus 105 --N~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~------------- 169 (278)
.|..+......+..+.-. -.....+|--+....-|.. . . ..-|++||| |.-.
T Consensus 267 ~~~~~~~~~~~~~l~~~~l~-i~d~~~~t~~~i~~~~~~~---~-~-------~~~~~~vvi-Dyl~~~~~~~~~~~~~~ 333 (444)
T 2q6t_A 267 DRDFSRLVDVASRLSEAPIY-IDDTPDLTLMEVRARARRL---V-S-------QNQVGLIII-DYLQLMSGPGSGKSGEN 333 (444)
T ss_dssp HHHHHHHHHHHHHHHTSCEE-EECCTTCBHHHHHHHHHHH---H-H-------HSCCCEEEE-ECGGGCBCC-------C
T ss_pred HHHHHHHHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHH---H-H-------CCCCCEEEE-EEHHHHCCCCCCCCCCH
T ss_conf 77899999999998639879-9689999999999999986---6-5-------146785999-62454214556776420
Q ss_pred CCHHHHH--------HHHCCCEEEEECCCCCCCHHCCCEEEECCC
Q ss_conf 7123212--------343398145403677670011520321577
Q gi|254780779|r 170 EKLAIQE--------ARRLRIPIVAVVDTNSNPDLVDYVIPGNDD 206 (278)
Q Consensus 170 e~~Av~E--------A~kl~IPvIaivDTn~dp~~idypIP~NDd 206 (278)
...+|.+ |..++||||+++-.|-+...-+-..|...|
T Consensus 334 ~~~~i~~i~~~Lk~lA~~~~i~vi~~sqlnr~~~~r~~~~p~~~d 378 (444)
T 2q6t_A 334 RQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSD 378 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHH
T ss_conf 999999999999999997398799985148210227899967776
No 89
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 1xny_A* 1xnv_A* 1xo6_A
Probab=41.87 E-value=7.3 Score=18.72 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=30.9
Q ss_pred HHHHHHHCCCCCEEEEECCCCC------------CHHHHHHHHCCCEEEEECCCCC
Q ss_conf 4433221135957999438877------------1232123433981454036776
Q gi|254780779|r 149 LDGIRDMGGLPDLMFVVDTNRE------------KLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 149 lgGi~~m~~lP~~iiv~d~~~e------------~~Av~EA~kl~IPvIaivDTn~ 192 (278)
+.|+..+.+.|=.|+-.||... ...|+-|...|||+|.++||-.
T Consensus 323 vtg~arl~G~~VGviAn~p~~~~G~~~~~~a~Kaarfi~lcd~~~iPlv~lvDtpG 378 (530)
T 3iav_A 323 LTGFGRVEGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPG 378 (530)
T ss_dssp EEEEEEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred EEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 78899987758999755732236887855699999999998636996589974467
No 90
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=41.68 E-value=18 Score=16.18 Aligned_cols=112 Identities=12% Similarity=-0.007 Sum_probs=54.1
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEE-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHH
Q ss_conf 78816996078235799999986339831-423345873234266655567789988763012--126774678876655
Q gi|254780779|r 65 RGGRILFVATKSQASDCVMEAAKRSAQYC-VNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKE--NQGFTKKERLNIERK 141 (278)
Q Consensus 65 ~gg~ILFVgTk~~~~~~i~~~A~~~~~~y-V~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~--~~~~tkKe~~~~~r~ 141 (278)
.|.+|.+||...-.+.+.+ .+...|+-. ...++.. ..+..-......+.++-+..+=. .--+|....-.+.++
T Consensus 145 ~gk~vgIiG~G~IG~~va~-~l~~fg~~V~~~d~~~~---~~~~~~~~~~~~l~~ll~~aDiv~~~lPlt~~T~~li~~~ 220 (333)
T 1j4a_A 145 RDQVVGVVGTGHIGQVFMQ-IMEGFGAKVITYDIFRN---PELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDE 220 (333)
T ss_dssp GGSEEEEECCSHHHHHHHH-HHHHTTCEEEEECSSCC---HHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHH
T ss_pred CCCEEEEEECCCCCHHHHH-HHCCCCCCEEEECCCCC---CCHHCCCCCCCCHHHHHHHCCEEEEECCCCCCHHCEECHH
T ss_conf 2888999924651474887-63366770110078777---1021056003879999864998999168985112010599
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEC---CCCCCHHHHHHHHCCCEEEEECCCC
Q ss_conf 6777643443322113595799943---8877123212343398145403677
Q gi|254780779|r 142 RDKLKRALDGIRDMGGLPDLMFVVD---TNREKLAIQEARRLRIPIVAVVDTN 191 (278)
Q Consensus 142 ~~kl~k~lgGi~~m~~lP~~iiv~d---~~~e~~Av~EA~kl~IPvIaivDTn 191 (278)
. ++.|+ |+++||== ..-+..|+-+|-+-|.---+.+|.-
T Consensus 221 ~---------~~~mk--~~a~lIN~aRG~iVde~aL~~aL~~g~i~gaalDV~ 262 (333)
T 1j4a_A 221 S---------IAKMK--QDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVY 262 (333)
T ss_dssp H---------HHHSC--TTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred H---------HHHCC--CCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEC
T ss_conf 9---------95258--998899854540257799999998599258999608
No 91
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=41.29 E-value=18 Score=16.15 Aligned_cols=164 Identities=13% Similarity=0.149 Sum_probs=75.8
Q ss_pred CCCCCCCCCC-EEEE----CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHCCCEECCCCCCCCCC
Q ss_conf 6210200188-1675----38999999999999999861078816996078235799999-9863398314233458732
Q gi|254780779|r 30 ERYIFCERNN-THII----DLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVME-AAKRSAQYCVNSKWLGGMM 103 (278)
Q Consensus 30 ~~yI~g~rng-ihII----dL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~-~A~~~~~~yV~~RWlGG~L 103 (278)
-.++-|.+.| +.+| ..-||...+..|++ .+.+|..|||+..--...++... .+..++.++-.-|.-.+-+
T Consensus 59 D~~~gG~~~G~l~vi~g~pg~GKT~~~l~l~~~----~~~~g~~vl~~SlEm~~~~l~~R~~~~~~~v~~~~i~~~~~~~ 134 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN----MSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDF 134 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH----HHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHH
T ss_pred HHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHH----HHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCCC
T ss_conf 876469788808999957999999999999998----7416982999847688878999999998485455442134313
Q ss_pred C--CHHHHHHHHHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC----------C
Q ss_conf 3--42666555677899887630--12126774678876655677764344332211359579994388----------7
Q gi|254780779|r 104 T--NWKTVSQSIQKLRDLEELLN--KENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTN----------R 169 (278)
Q Consensus 104 T--N~~ti~~si~~l~~l~~~~~--~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~----------~ 169 (278)
+ -|..+... ...+..... ......+--+.....++ +.+..+ ..|++|| +|.. .
T Consensus 135 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~viv-iD~l~~~~~~~~~~~ 201 (315)
T 3bh0_A 135 ASEDWGKLSMA---IGEISNSNINIFDKAGQSVNYIWSKTRQ---TKRKNP------GKRVIVM-IDYLQLLEPAKANDS 201 (315)
T ss_dssp CSSCHHHHHHH---HHHHHTSCEEEECCSCCBHHHHHHHHHH---HHHTSS------SCCEEEE-EECGGGSBCSCTTSC
T ss_pred CHHHHHHHHHH---HHHHHCCCEEEECCCCCCHHHHHHHHHH---HHHHHC------CCCCHHH-HHHHHHHCCCCCCCC
T ss_conf 48899999999---9876418747854877534899999999---888634------7752105-779875036777878
Q ss_pred CCHHHHH--------HHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHH
Q ss_conf 7123212--------3433981454036776700115203215772689
Q gi|254780779|r 170 EKLAIQE--------ARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRS 210 (278)
Q Consensus 170 e~~Av~E--------A~kl~IPvIaivDTn~dp~~idypIP~NDds~~s 210 (278)
+..++.+ |..++||||.++-.|-+...=.--.|.-.|-.-|
T Consensus 202 ~~~~i~~i~~~Lk~lA~~~~i~ii~lsQlnr~~~~~~~~~p~~~dl~gS 250 (315)
T 3bh0_A 202 RTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRES 250 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 9999999999999999973997899975363201146887662223333
No 92
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Probab=40.85 E-value=9.7 Score=17.90 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=18.3
Q ss_pred CHHHHHHHHCCCEEEEECCCCC
Q ss_conf 1232123433981454036776
Q gi|254780779|r 171 KLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 171 ~~Av~EA~kl~IPvIaivDTn~ 192 (278)
...|+-|.+.|||+|.|+||-.
T Consensus 396 arfi~lcd~~~iPlv~lvD~pG 417 (587)
T 1pix_A 396 NEFVTLCARDRLPIVWIQDTTG 417 (587)
T ss_dssp HHHHHHHHHTTCCEEEEECCCE
T ss_pred HHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999987642996689715888
No 93
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structural genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=40.00 E-value=19 Score=16.02 Aligned_cols=44 Identities=25% Similarity=0.191 Sum_probs=35.8
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCH
Q ss_conf 10788169960782357999999863398314233458732342
Q gi|254780779|r 63 VARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNW 106 (278)
Q Consensus 63 ~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~ 106 (278)
...|++||.||....+.++....+..+...+...|.-++.+.++
T Consensus 209 ~f~gk~VlVVG~g~Sg~Dia~~l~~~a~~~~~~s~~~~~~~~~~ 252 (447)
T 2gv8_A 209 LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNE 252 (447)
T ss_dssp GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCBCS
T ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCC
T ss_conf 20467599989877799999999986786799982488765785
No 94
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=38.95 E-value=11 Score=17.60 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=17.5
Q ss_pred HHHHHHHHCCCEEEEECCCCC
Q ss_conf 232123433981454036776
Q gi|254780779|r 172 LAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 172 ~Av~EA~kl~IPvIaivDTn~ 192 (278)
..|+-|.+.|||+|.++||-.
T Consensus 399 rfi~lcd~f~lPlv~lvD~pG 419 (588)
T 3gf3_A 399 EFVTLCARDRIPLIWLQDTTG 419 (588)
T ss_dssp HHHHHHHHTTCCEEEEECCCE
T ss_pred HHHHHHCCCCCCEEEEECCCC
T ss_conf 999851547987699935788
No 95
>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6- phosphate transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=38.61 E-value=20 Score=15.88 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=31.6
Q ss_pred CCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEEC
Q ss_conf 9579994388771----23212343398145403677670--0115203215
Q gi|254780779|r 159 PDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPGN 204 (278)
Q Consensus 159 P~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~N 204 (278)
+++||++....+. -|++-|+..|.++|+++++...| ...||.|+.+
T Consensus 98 ~~lvI~iSqSG~T~etv~a~~~ak~~ga~~i~itn~~~S~l~~~~d~~i~~~ 149 (367)
T 2poc_A 98 DDTCVFVSQSGETADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVHIN 149 (367)
T ss_dssp TEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCEEEEC
T ss_conf 9869997499897899999999997599699996788856663367436646
No 96
>3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens}
Probab=38.11 E-value=12 Score=17.34 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.3
Q ss_pred HHHHHHHHCCCEEEEECCCCC
Q ss_conf 232123433981454036776
Q gi|254780779|r 172 LAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 172 ~Av~EA~kl~IPvIaivDTn~ 192 (278)
.+|+-|.+.|||+|.++||-.
T Consensus 448 rfI~lcd~~~lPLv~LvD~pG 468 (760)
T 3ff6_A 448 QAIKDFNREKLPLMIFANWRG 468 (760)
T ss_dssp HHHHHHHHTTCCEEEECCCCC
T ss_pred HHHHHHCCCCCCEEEEECCCC
T ss_conf 999984546998599954887
No 97
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=37.92 E-value=20 Score=15.81 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=21.4
Q ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHCCCE---------EC--CC--CCCCCCCCCHHHHHHHH
Q ss_conf 6107881699607823579999998633983---------14--23--34587323426665556
Q gi|254780779|r 62 TVARGGRILFVATKSQASDCVMEAAKRSAQY---------CV--NS--KWLGGMMTNWKTVSQSI 113 (278)
Q Consensus 62 i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~---------yV--~~--RWlGG~LTN~~ti~~si 113 (278)
.-.+||+|+-|||- +-+.++..+...|.. |+ -. |-.-|+||||..=+.++
T Consensus 246 ak~~g~rIiAVGTT--~~RaLEs~~~~~~~~~~~~g~T~lfI~Pgy~f~vvd~LlTNFHlPkSTL 308 (345)
T 1wdi_A 246 AKAEGRRVVAVGTT--VVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPRSTL 308 (345)
T ss_dssp HHHTTCCEEEESHH--HHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTTCHH
T ss_pred HHHCCCCEEEEECC--HHHHHHHHHHCCCCCCCCCCEECEEECCCCCCCEECEEEECCCCCCCHH
T ss_conf 99749929999240--8999999996189604678605859639898758176344573784589
No 98
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=37.70 E-value=21 Score=15.79 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=24.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 957999438877123212343398145403677670011520321577268999999999
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLV 218 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i 218 (278)
+|.++++........+......++|++.+ |.++++..+++..+ |-..+.++.+..+
T Consensus 117 vdgiii~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~---d~~~~~~~a~~~l 172 (332)
T 2hsg_A 117 VDGIIFMSGNVTEEHVEELKKSPVPVVLA-ASIESTNQIPSVTI---DYEQAAFDAVQSL 172 (332)
T ss_dssp SCCEEECCSSCCHHHHHHHTTSSSCEEEE-SCCCSCTTSCEEEE---CHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHCCCCEEEE-ECCCCCCCCCEEEE---CHHHHHHHHHHHH
T ss_conf 41999346779989999998559988985-11368888876874---5799999999999
No 99
>1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=37.36 E-value=8.2 Score=18.38 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 99999999999861078816996078235
Q gi|254780779|r 50 PMLQKALQVISDTVARGGRILFVATKSQA 78 (278)
Q Consensus 50 ~~L~~A~~~i~~i~~~gg~ILFVgTk~~~ 78 (278)
..+.....+++.....+.-||=|+---|.
T Consensus 77 p~~~~~~~li~~~~~~~~PiLGIClG~Ql 105 (239)
T 1o1y_A 77 PFLKYEFQLIEEILKKEIPFLGICLGSQM 105 (239)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 21299999999999769999998189999
No 100
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=36.72 E-value=21 Score=15.69 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=19.2
Q ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 610788169960782357999999863398314233458732342666555677899
Q gi|254780779|r 62 TVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRD 118 (278)
Q Consensus 62 i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~ 118 (278)
++.-.-.+.|.+..-.. ..........+.+.+..-+... .+..+...+..+-+
T Consensus 55 i~~l~PDlVi~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~lg~ 107 (256)
T 2r7a_A 55 ILSLRPDSVITWQDAGP-QIVLDQLRAQKVNVVTLPRVPA---TLEQMYANIRQLAK 107 (256)
T ss_dssp HHTTCCSEEEEETTCSC-HHHHHHHHHTTCEEEEECCCSC---CHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEECCCCC-HHHHHHHHHCCCEEEECCCCCC---CHHHHHHHHHHHHH
T ss_conf 97149981773145783-4667888744842786267678---99999999999998
No 101
>1mug_A Protein (G:T/U specific DNA glycosylase); hydrolase; 1.80A {Escherichia coli} SCOP: c.18.1.2 PDB: 1mtl_A 1mwi_A* 1mwj_A
Probab=36.37 E-value=6.7 Score=18.93 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=23.7
Q ss_pred HHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECC
Q ss_conf 9986107881699607823579999998633983142
Q gi|254780779|r 59 ISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVN 95 (278)
Q Consensus 59 i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~ 95 (278)
|.++...+-+|||||+.|...+ .+.|.||.+
T Consensus 2 ~~d~i~p~~~vlivG~~Pg~~s------~~~g~~y~~ 32 (168)
T 1mug_A 2 VEDILAPGLRVVFCGINPGLSS------AGTGFPFAH 32 (168)
T ss_dssp CCCBCCTTCSEEEEESSCCHHH------HHHSSTTCS
T ss_pred CCCCCCCCCCEEEEECCCCHHH------HHCCCCCCC
T ss_conf 8866699998899847989778------855998679
No 102
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=36.10 E-value=22 Score=15.63 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=22.8
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 078816996078235799999986339831
Q gi|254780779|r 64 ARGGRILFVATKSQASDCVMEAAKRSAQYC 93 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~i~~~A~~~~~~y 93 (278)
-+|++||+||..+.+..-++.+.+....-.
T Consensus 29 L~~k~VLVVGgG~vA~rKi~~Ll~~ga~Vt 58 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEGAAIT 58 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGCCCEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE
T ss_conf 399859998988999999999974899799
No 103
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str}
Probab=35.94 E-value=10 Score=17.76 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=29.3
Q ss_pred HHHHHHCCCCCEEEEECCCCC------------CHHHHHHHHCCCEEEEECCCCC
Q ss_conf 433221135957999438877------------1232123433981454036776
Q gi|254780779|r 150 DGIRDMGGLPDLMFVVDTNRE------------KLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 150 gGi~~m~~lP~~iiv~d~~~e------------~~Av~EA~kl~IPvIaivDTn~ 192 (278)
.|.--+.+.|-.|+--+|... .-.|+-|...|||+|.++||-.
T Consensus 317 tg~arl~G~~VGvvAn~p~~~~G~~~~~~a~Kaarfi~lcd~~~iPlv~lvDtpG 371 (522)
T 1x0u_A 317 VGFARIAGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDAFNIPLISLVDTPG 371 (522)
T ss_dssp EEEEEETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred EEEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 8888886926689777864467877737799999999733002754799842787
No 104
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, tetramere, structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3
Probab=35.86 E-value=22 Score=15.60 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=27.5
Q ss_pred CCEEEEECCCCC---CHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 957999438877---123212343398145403677670
Q gi|254780779|r 159 PDLMFVVDTNRE---KLAIQEARRLRIPIVAVVDTNSNP 194 (278)
Q Consensus 159 P~~iiv~d~~~e---~~Av~EA~kl~IPvIaivDTn~dp 194 (278)
.+-|++.+...+ ...+++|..+|.-|+-+-|.-+..
T Consensus 132 i~~lii~G~~T~~CV~~Ta~~a~~~Gy~v~vv~Da~~s~ 170 (199)
T 1j2r_A 132 IDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAA 170 (199)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEEBS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 764898525757289999999998798799977124799
No 105
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=35.57 E-value=22 Score=15.58 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=18.5
Q ss_pred EEEEECCHHH------HHHHHHHHHHCCCEECCCCCCCCCCCCHHHH
Q ss_conf 6996078235------7999999863398314233458732342666
Q gi|254780779|r 69 ILFVATKSQA------SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTV 109 (278)
Q Consensus 69 ILFVgTk~~~------~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti 109 (278)
|-|+|+...+ +...++.+.+.|.|-+. ++..+|....
T Consensus 113 I~~iGps~~~I~~~~Dr~~~r~~m~~~gvPv~~----s~~v~s~eea 155 (1073)
T 1a9x_A 113 VTMIGATADAIDKAEDRRRFDVAMKKIGLETAR----SGIAHTMEEA 155 (1073)
T ss_dssp CEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCS----EEEESSHHHH
T ss_pred CEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCC----CEEECCHHHH
T ss_conf 889889999999725999999999977999899----7220899999
No 106
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=35.48 E-value=22 Score=15.57 Aligned_cols=26 Identities=4% Similarity=0.035 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999999998610788169960
Q gi|254780779|r 48 TVPMLQKALQVISDTVARGGRILFVA 73 (278)
Q Consensus 48 T~~~L~~A~~~i~~i~~~gg~ILFVg 73 (278)
+...+.+++..+..+..+.--|++.|
T Consensus 24 ~~~~l~~~~~~i~~~~~~~D~vv~tG 49 (274)
T 3d03_A 24 VNAANADVVSQLNALRERPDAVVVSG 49 (274)
T ss_dssp HHHHHHHHHHHHHTCSSCCSEEEEES
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 99999999999983289999999887
No 107
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=35.48 E-value=13 Score=17.18 Aligned_cols=52 Identities=23% Similarity=0.185 Sum_probs=31.9
Q ss_pred CHHHHHHHHCCCEE-EEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 12321234339814-54036776700115203215772689999999999999999
Q gi|254780779|r 171 KLAIQEARRLRIPI-VAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDG 225 (278)
Q Consensus 171 ~~Av~EA~kl~IPv-IaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g 225 (278)
..|+.+|++.|.|| |++||.+.++- +..-..+-...|+++-...---++.-|
T Consensus 75 ~aAv~~A~~~G~~VsVaVVD~~G~ll---a~~RmDgA~~~s~eiA~~KA~TAa~~~ 127 (192)
T 3fpw_A 75 RAAVEAAEKDGRHVSVAVVDRNGNTL---VTLRGDGAGPQSYESAERKAFTAVSWN 127 (192)
T ss_dssp HHHHHHHHHTTCCCEEEEEETTSCEE---EEEECTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCEE---EEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999839937999997999999---999337886356999999999998627
No 108
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=35.23 E-value=23 Score=15.54 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECC
Q ss_conf 359579994388771232123433981------454036
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVD 189 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivD 189 (278)
..|+++|+.+...-.-+++.+...|+. |+|+=|
T Consensus 196 ~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~ivg~d~ 234 (301)
T 3miz_A 196 DRPTAIMSGNDEMAIQIYIAAMALGLRIPQDVSIVGFDD 234 (301)
T ss_dssp TCCSEEEESSHHHHHHHHHHHHTTTCCHHHHCEEECSBC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 999830038899999999999981998896300241277
No 109
>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp}
Probab=35.16 E-value=23 Score=15.53 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=33.2
Q ss_pred CCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEECC
Q ss_conf 9579994388771----23212343398145403677670--01152032157
Q gi|254780779|r 159 PDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPGND 205 (278)
Q Consensus 159 P~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~ND 205 (278)
.++||.+....+. -|++.|++.|.++|+|+.+-..| ...|+.|+.+-
T Consensus 98 ~tlvI~iSqSG~T~eti~Al~~ak~~ga~~i~iTn~~~S~la~~~d~~i~~~~ 150 (366)
T 3knz_A 98 KALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPC 150 (366)
T ss_dssp SEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSSSCGGGGGCSEECCCCC
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCCCCCCC
T ss_conf 81899992894988999999999972983783378886565512674320355
No 110
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotransferase; 16423107, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Salmonella typhimurium LT2}
Probab=34.66 E-value=23 Score=15.48 Aligned_cols=64 Identities=9% Similarity=0.152 Sum_probs=38.9
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEECC-CCHHHHHHHHHHHHHHH
Q ss_conf 957999438877----123212343398145403677670--01152032157-72689999999999999
Q gi|254780779|r 159 PDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPGND-DSSRSIALFCDLVASAA 222 (278)
Q Consensus 159 P~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~ND-ds~~si~l~~~~i~~ai 222 (278)
-+++|.+....+ -.|++.|+..|.++|+|+.....| ...||.||..- .+.....+.+..++-++
T Consensus 103 ~~lvi~iS~SG~t~e~~~a~~~a~~~g~~~i~it~~~~s~l~~~~d~~i~~~~~~~~~~~~~~~~~l~l~l 173 (355)
T 2a3n_A 103 DSVVITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMRHKNGVEYEYMLLYWLFFRV 173 (355)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEECCCSSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98899981899987999999999975984999851267203301332101245652027889999999999
No 111
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=34.26 E-value=23 Score=15.44 Aligned_cols=44 Identities=11% Similarity=0.253 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHH-HHHHHHHHHHCCCEECCC
Q ss_conf 99999999861078816996078235-799999986339831423
Q gi|254780779|r 53 QKALQVISDTVARGGRILFVATKSQA-SDCVMEAAKRSAQYCVNS 96 (278)
Q Consensus 53 ~~A~~~i~~i~~~gg~ILFVgTk~~~-~~~i~~~A~~~~~~yV~~ 96 (278)
--|..|+..+..+|..|.||..++.. .+...+-.++.|.|++..
T Consensus 104 pga~~f~~~a~~~Gv~VfyvTnR~~~~~~aT~~NL~~~G~p~~~~ 148 (258)
T 2i33_A 104 PGSIDFLKYTESKGVDIYYISNRKTNQLDATIKNLERVGAPQATK 148 (258)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHHHHHHHTCSSCST
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 569999999997597599963872567999999999859985236
No 112
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=34.02 E-value=18 Score=16.17 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 9999999999999861078816996078235
Q gi|254780779|r 48 TVPMLQKALQVISDTVARGGRILFVATKSQA 78 (278)
Q Consensus 48 T~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~ 78 (278)
.....+.|...+.++..+|+..++||---..
T Consensus 76 v~~f~~~a~~~i~~i~~~gk~PIiVGGTglY 106 (323)
T 3crm_A 76 AAEFRADALAAMAKATARGRIPLLVGGTMLY 106 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCHHH
T ss_conf 9999999999999998359940897561399
No 113
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X*
Probab=33.64 E-value=24 Score=15.38 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=32.3
Q ss_pred CEEEEECCCCC----CHHHHHHHHCC-CEEEEECCCCCCC--HHCCCEEEECC
Q ss_conf 57999438877----12321234339-8145403677670--01152032157
Q gi|254780779|r 160 DLMFVVDTNRE----KLAIQEARRLR-IPIVAVVDTNSNP--DLVDYVIPGND 205 (278)
Q Consensus 160 ~~iiv~d~~~e----~~Av~EA~kl~-IPvIaivDTn~dp--~~idypIP~ND 205 (278)
+++|.+.+..| .-|++.|+..| +|+|||++.-..| ...|++|+.+-
T Consensus 341 ~lvI~iSQSGeT~dti~Al~~ak~~G~~~ti~itn~~~S~l~~~aD~~i~~~~ 393 (608)
T 2bpl_A 341 SLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNA 393 (608)
T ss_dssp EEEEEEESSSCCHHHHHHHHHHHHTTCSEEEEEESSTTCHHHHHSSEEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCEEEEECC
T ss_conf 58999717899578999999999729982899953789878875061066446
No 114
>2a2l_A Unknown; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=33.62 E-value=14 Score=16.87 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=10.8
Q ss_pred HHHHHHHCCCEE-EEECCCCCCC
Q ss_conf 321234339814-5403677670
Q gi|254780779|r 173 AIQEARRLRIPI-VAVVDTNSNP 194 (278)
Q Consensus 173 Av~EA~kl~IPv-IaivDTn~dp 194 (278)
|+++|..+|.|| |++||.+.++
T Consensus 24 a~~~A~~~g~~v~iaVvD~~G~l 46 (145)
T 2a2l_A 24 VEKKATEINVAVVFSVVDRGGNT 46 (145)
T ss_dssp HHHHHHHTTCCCEEEEEETTSCE
T ss_pred HHHHHHHCCCCEEEEEECCCCCE
T ss_conf 99999981997899999799999
No 115
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=32.91 E-value=25 Score=15.30 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCEEEEECCCCCC---HHHHHHHHCCCEEEEECCC-----------CCCCHHCCCEEEE
Q ss_conf 9579994388771---2321234339814540367-----------7670011520321
Q gi|254780779|r 159 PDLMFVVDTNREK---LAIQEARRLRIPIVAVVDT-----------NSNPDLVDYVIPG 203 (278)
Q Consensus 159 P~~iiv~d~~~e~---~Av~EA~kl~IPvIaivDT-----------n~dp~~idypIP~ 203 (278)
|++.|+.=++--. .|+... .++++|||||+ +.+++.|+|-..|
T Consensus 144 P~A~iin~tNP~~ivt~a~~~~--~~~~~iGlC~~p~~~~~la~~Lgv~~~~v~~~~~G 200 (480)
T 1obb_A 144 PKAWYLQAANPIFEGTTLVTRT--VPIKAVGFCHGHYGVMEIVEKLGLEEEKVDWQVAG 200 (480)
T ss_dssp TTCEEEECSSCHHHHHHHHHHH--SCSEEEEECSGGGHHHHHHHHTTCCGGGEEEEEEE
T ss_pred CCEEEEEECCCHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHCCCHHHCEEEEEE
T ss_conf 9849999568169999998643--66528985798315899999949987895799986
No 116
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=32.70 E-value=25 Score=15.28 Aligned_cols=140 Identities=15% Similarity=0.091 Sum_probs=68.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCEEEECHHH-H----HHHHHHHHHHHHHHHC--------CCCEEEEEECCHHH--
Q ss_conf 886075477657885621020-018816753899-9----9999999999998610--------78816996078235--
Q gi|254780779|r 15 GVQFGHRNFLWNPKMERYIFC-ERNNTHIIDLSQ-T----VPMLQKALQVISDTVA--------RGGRILFVATKSQA-- 78 (278)
Q Consensus 15 g~H~Gh~~~~wnPkM~~yI~g-~rngihIIdL~k-T----~~~L~~A~~~i~~i~~--------~gg~ILFVgTk~~~-- 78 (278)
|.|--|.-..-.-+|.+.+.. .-.|-|+|+++. | ...|..|..+ +.... +|+.|-.+=-++..
T Consensus 3 ~~~~~~~~~~~~~~m~~~~~~~~~~gk~~l~~~d~s~~ei~~Ll~~A~~l-K~~~~~~~~~~~L~gK~v~llF~epSTRT 81 (359)
T 2w37_A 3 GSHHHHHHGDDDDKMTKDFRQNVFQGRSVLAEKDFSAAELEYLIDFGLHL-KALKKAGIPHHYLEGKNIALLFEKSSTRT 81 (359)
T ss_dssp ----------------CCCCCBTTTTCCBCCGGGSCHHHHHHHHHHHHHH-HHHHHHTCCCCTTTTCEEEEEESSCCHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCEEEEEECCCCCHH
T ss_conf 76545457750677747776377889880860118999999999999999-98875699874579998999956897106
Q ss_pred HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 79999998633983142334587323426665556778998876301212677467887665567776434433221135
Q gi|254780779|r 79 SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGL 158 (278)
Q Consensus 79 ~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~l 158 (278)
+-..+..+.+.|...++-.+ -..| +.|.| ....-++.|...
T Consensus 82 R~SFe~A~~~LGg~~i~l~~----------~~ss-----------------~~kgE------------s~~Dt~~~ls~y 122 (359)
T 2w37_A 82 RSAFTTASIDLGAHPEYLGQ----------NDIQ-----------------LGKKE------------STSDTAKVLGSM 122 (359)
T ss_dssp HHHHHHHHHHTTCEEEEECT----------TTCC-----------------TTTSS------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEECCC----------CCCC-----------------CCCCH------------HHHHHHHHHHHC
T ss_conf 99999999985996898887----------6565-----------------77742------------288999986404
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 9579994388771232123433981454036776700
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPD 195 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~ 195 (278)
-|++++--+.... .-.=|....||||.-.+...-|.
T Consensus 123 ~D~iv~R~~~~~~-~~~~a~~~~vPvIN~~~~~~HPt 158 (359)
T 2w37_A 123 FDGIEFRGFKQSD-AEILARDSGVPVWNGLTDEWHPT 158 (359)
T ss_dssp CSEEEEESSCHHH-HHHHHHHSSSCEEEEECSSCCHH
T ss_pred CCEEEEECCCHHH-HHHHHHHCCCCEECCCCCCCCHH
T ss_conf 6446551550556-99998614885665777745789
No 117
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=32.60 E-value=25 Score=15.27 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=32.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEECCC-CCCCHHCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 95799943887712321234339814540367-7670011520321577268999999999
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAVVDT-NSNPDLVDYVIPGNDDSSRSIALFCDLV 218 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIaivDT-n~dp~~idypIP~NDds~~si~l~~~~i 218 (278)
=|.+|++.-..-.....+-.+.+||+|++--| |.|-...|| =||=|-|++.+.-.+..+
T Consensus 95 Id~li~iGGdgs~~~a~~l~e~~~~vigIPkTIDNDl~~td~-s~Gf~TA~~~~~~~i~~i 154 (320)
T 1pfk_A 95 IDALVVIGGDGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDY-TIGFFTALSTVVEAIDRL 154 (320)
T ss_dssp CCEEEEEECHHHHHHHHHHHHTTCCEEEEEBCTTCCCTTCSC-CBTHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHHH
T ss_conf 988999369368999999764367433121122279988533-883788899999999998
No 118
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 1n4a_A* 1n4d_A
Probab=32.55 E-value=25 Score=15.26 Aligned_cols=13 Identities=8% Similarity=0.268 Sum_probs=5.7
Q ss_pred CCEEEEECCCCCC
Q ss_conf 9579994388771
Q gi|254780779|r 159 PDLMFVVDTNREK 171 (278)
Q Consensus 159 P~~iiv~d~~~e~ 171 (278)
||+||+.+...+.
T Consensus 188 PDvIi~~~~~~~~ 200 (245)
T 1n2z_A 188 PQAIVITGGPDQI 200 (245)
T ss_dssp CSEEEEESCGGGH
T ss_pred CCEEEEECCCCCH
T ss_conf 7999996997515
No 119
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4
Probab=32.48 E-value=13 Score=17.17 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=29.2
Q ss_pred HHHHHCCCCCEEEEECCCCC------------CHHHHHHHHCCCEEEEECCCCC
Q ss_conf 33221135957999438877------------1232123433981454036776
Q gi|254780779|r 151 GIRDMGGLPDLMFVVDTNRE------------KLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 151 Gi~~m~~lP~~iiv~d~~~e------------~~Av~EA~kl~IPvIaivDTn~ 192 (278)
|+.-+.+.|=.|+-.++... .-.|+=|.+.|||+|.|+||-.
T Consensus 323 g~arl~G~pVgviAn~~~~~~G~~~~~~a~Kaarfi~lcd~~~lPlv~lvDtpG 376 (527)
T 1vrg_A 323 GFARIQGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPG 376 (527)
T ss_dssp EEEEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred EEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 999999888889833663337887504789999999985145986699950688
No 120
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=32.43 E-value=18 Score=16.13 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=23.2
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 07881699607823579999998633983142334587323426665556778998
Q gi|254780779|r 64 ARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l 119 (278)
.-.-. |++++... ..-+.+..+..+.+++... ..++..+...+..+-++
T Consensus 58 ~l~PD-lIi~~~~~-~~~~~~~l~~~~i~~~~~~-----~~~~~~~~~~i~~lg~~ 106 (260)
T 2q8p_A 58 KLKPT-HVLSVSTI-KDEMQPFYKQLNMKGYFYD-----FDSLKGMQKSITQLGDQ 106 (260)
T ss_dssp HTCCS-EEEEEGGG-HHHHHHHHHHHTSCCEEEC-----CSSHHHHHHHHHHHHHH
T ss_pred HCCCC-EEEECCCC-CHHHHHHHHHCCCCEEECC-----CCCHHHHHHHHHHHHHH
T ss_conf 25998-89724886-0899999973256166369-----99999999999999887
No 121
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=32.01 E-value=25 Score=15.21 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=17.4
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEC
Q ss_conf 88169960782357999999863398314
Q gi|254780779|r 66 GGRILFVATKSQASDCVMEAAKRSAQYCV 94 (278)
Q Consensus 66 gg~ILFVgTk~~~~~~i~~~A~~~~~~yV 94 (278)
.+.++....-......+.+.|...|.|.|
T Consensus 62 ~~~~i~~~~~~~~~~~il~~a~~~gIpvv 90 (350)
T 3h75_A 62 KPDYLMLVNEQYVAPQILRLSQGSGIKLF 90 (350)
T ss_dssp CCSEEEEECCSSHHHHHHHHHTTSCCEEE
T ss_pred CEEEEEECCCCCCCHHHHHHHHHCCCEEE
T ss_conf 86999967832036999999998699499
No 122
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, JCSG, PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=31.95 E-value=25 Score=15.20 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=34.3
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHCCC--EEEECCCCHHH
Q ss_conf 957999438877----123212343398145403677670--01152--03215772689
Q gi|254780779|r 159 PDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDY--VIPGNDDSSRS 210 (278)
Q Consensus 159 P~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~idy--pIP~NDds~~s 210 (278)
.+++|.+....+ -.|++.|++.|.++|+|......| ...|| ++|+.+.++.+
T Consensus 101 ~~lvI~iSqSG~T~e~~~a~~~ak~~g~~~i~iT~~~~s~la~~~d~~i~~~~~ee~va~ 160 (342)
T 1j5x_A 101 RGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLVFPVREEAIVM 160 (342)
T ss_dssp SEEEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESCTTSHHHHHSSEEEECCCCCCSSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHH
T ss_conf 858999828999689999999998769808876235553000024606873367531133
No 123
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=31.87 E-value=13 Score=17.11 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=13.4
Q ss_pred HHHHHHHHHHCCCCEEEEEECC
Q ss_conf 9999999861078816996078
Q gi|254780779|r 54 KALQVISDTVARGGRILFVATK 75 (278)
Q Consensus 54 ~A~~~i~~i~~~gg~ILFVgTk 75 (278)
.+..+++.+.+.|+..+.+-..
T Consensus 29 i~~~yv~~l~~aGa~pv~ip~~ 50 (254)
T 3fij_A 29 TQQRYVDAIQKVGGFPIALPID 50 (254)
T ss_dssp -CHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEECCC
T ss_conf 9999999999869989997589
No 124
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=31.57 E-value=13 Score=17.02 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=30.0
Q ss_pred HHHHHHCCCCCEEEEECCCCC------------CHHHHHHHHCCCEEEEECCCCC
Q ss_conf 433221135957999438877------------1232123433981454036776
Q gi|254780779|r 150 DGIRDMGGLPDLMFVVDTNRE------------KLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 150 gGi~~m~~lP~~iiv~d~~~e------------~~Av~EA~kl~IPvIaivDTn~ 192 (278)
.|+.-+.+.|=.|+--+|... .-.|+=|...|||+|.|+||-.
T Consensus 339 tg~aRl~G~~VGviAn~~~~~~G~l~~~aa~Kaarfi~lcd~f~iPlv~lvD~pG 393 (548)
T 2bzr_A 339 VGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPG 393 (548)
T ss_dssp EEEEEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred EEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 8999976947999815641336787806789999999998743898169974898
No 125
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=31.53 E-value=26 Score=15.16 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCC------EEEEECCC
Q ss_conf 35957999438877123212343398------14540367
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRI------PIVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~I------PvIaivDT 190 (278)
..|+++|+.+-.--.-+++-+.++|+ -|||+-|+
T Consensus 237 ~~~~ai~~~~d~~A~g~~~~l~~~g~~vP~di~vig~d~~ 276 (349)
T 1jye_A 237 IVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDT 276 (349)
T ss_dssp CCCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEECSBCC
T ss_pred CCCCEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 9983564388499999999999818978998599996882
No 126
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans och 114}
Probab=31.42 E-value=13 Score=16.99 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHHHCCCCCEEEEECCCC------------CCHHHHHHHHCCCEEEEECCCCC
Q ss_conf 43322113595799943887------------71232123433981454036776
Q gi|254780779|r 150 DGIRDMGGLPDLMFVVDTNR------------EKLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 150 gGi~~m~~lP~~iiv~d~~~------------e~~Av~EA~kl~IPvIaivDTn~ 192 (278)
-|+.-+.+.|-.|+--|+.. -.-.|+=|.+.|||+|.++||-.
T Consensus 330 tg~aRi~G~~VGivAn~~~~~~G~~~~~~a~Kaarfi~lcd~f~iPlv~lvD~pG 384 (531)
T 3n6r_B 330 TGFIRLEGRTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPG 384 (531)
T ss_dssp EEEEEETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred EEEEEECCCEEEEECCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 6888986967999824511026873046899999999978752883699944888
No 127
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=30.81 E-value=27 Score=15.08 Aligned_cols=35 Identities=26% Similarity=0.205 Sum_probs=18.7
Q ss_pred CCCCEEEEECCCCCCH---HHHHHHHCCCEEEEECCCC
Q ss_conf 3595799943887712---3212343398145403677
Q gi|254780779|r 157 GLPDLMFVVDTNREKL---AIQEARRLRIPIVAVVDTN 191 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~---Av~EA~kl~IPvIaivDTn 191 (278)
..|+++|+.+-..-.- |++++..-.+.+||+-+++
T Consensus 182 ~~~~ai~~~~d~~a~~~~~~~~~~g~~dv~ivg~d~~~ 219 (283)
T 2ioy_A 182 PKIDAVFAQNDEMALGAIKAIEAANRQGIIVVGFDGTE 219 (283)
T ss_dssp SCCCEEEESSHHHHHHHHHHHHHTTCCCCEEEEEECCH
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCH
T ss_conf 89978996882999999999998099988899978968
No 128
>2l3f_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=30.68 E-value=23 Score=15.53 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=23.7
Q ss_pred HHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 8610788169960782357999999863398314233
Q gi|254780779|r 61 DTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSK 97 (278)
Q Consensus 61 ~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~R 97 (278)
.+...+-+|||+||.|.. .+...|+||-+-+
T Consensus 8 p~~~~~~~VLilGs~Pg~------~S~~~g~yYa~p~ 38 (166)
T 2l3f_A 8 AVLDENTEILILGSLPSD------ESIRKQQYYGNPG 38 (166)
T ss_dssp CBCCSSCSEEEEESSCCH------HHHHHTSGGGSTT
T ss_pred CCCCCCCCEEEEECCCCH------HHHHCCCCCCCCC
T ss_conf 966999868998528897------7886688757998
No 129
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5
Probab=30.47 E-value=27 Score=15.04 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=31.3
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 10788169960782357999999863398314233
Q gi|254780779|r 63 VARGGRILFVATKSQASDCVMEAAKRSAQYCVNSK 97 (278)
Q Consensus 63 ~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~R 97 (278)
-..|++|+.||+...+.+++-..|..+..-++..|
T Consensus 183 ~~~gK~V~ViG~G~Sa~qi~~~l~~~a~~v~~~~R 217 (542)
T 1w4x_A 183 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQR 217 (542)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEES
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEECC
T ss_conf 55787579991684234454777630332367526
No 130
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=30.46 E-value=27 Score=15.04 Aligned_cols=80 Identities=10% Similarity=0.132 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH------HHHHHHHHHHCC--CEECCCC
Q ss_conf 78856210200188167538999999999999999861078816996078235------799999986339--8314233
Q gi|254780779|r 26 NPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQA------SDCVMEAAKRSA--QYCVNSK 97 (278)
Q Consensus 26 nPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~------~~~i~~~A~~~~--~~yV~~R 97 (278)
.|.+...+..+++=.-.-| ....|.+++.-+.+--.+.+-|..++|-... ..+.++...+.+ .+-++-+
T Consensus 79 ~prf~ta~leE~Di~g~~~---~~~eL~r~i~~l~~~r~~Pk~IfV~sTC~seiIGdDl~~va~~l~~~~~~~v~v~~~~ 155 (437)
T 3aek_A 79 EPRFGTAVLEEQDLAGLAD---AHKELDREVAKLLERRPDIRQLFLVGSCPSEVLKLDLDRAAERLSGLHAPHVRVYSYT 155 (437)
T ss_dssp CCSEEEEECCGGGGSSSCC---HHHHHHHHHHHHHHTCTTCCEEEEEECHHHHHTTCCHHHHHHHHHHHSTTTCEEEEEE
T ss_pred CCCCEEEECCCCHHHCCCC---CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 7741466546136425576---2799999999999608998789997468388767789999999987208982499624
Q ss_pred CCCCCCCCHHHH
Q ss_conf 458732342666
Q gi|254780779|r 98 WLGGMMTNWKTV 109 (278)
Q Consensus 98 WlGG~LTN~~ti 109 (278)
.+|.-++|.+-
T Consensus 156 -~~g~~~~~~~G 166 (437)
T 3aek_A 156 -GSGLDTTFTQG 166 (437)
T ss_dssp -CCTTTCCTTHH
T ss_pred -CCCCCCCHHHH
T ss_conf -88745336799
No 131
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=29.62 E-value=15 Score=16.67 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=29.1
Q ss_pred HHHHHHCCCCCEEEEECCCCC------------CHHHHHHHHCCCEEEEECCCCC
Q ss_conf 433221135957999438877------------1232123433981454036776
Q gi|254780779|r 150 DGIRDMGGLPDLMFVVDTNRE------------KLAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 150 gGi~~m~~lP~~iiv~d~~~e------------~~Av~EA~kl~IPvIaivDTn~ 192 (278)
.|+--+.+.|=.|+-.||... .-.|+-|...|||+|.++||-.
T Consensus 318 tg~aRl~G~~VGviAn~p~~~~G~l~~~~a~Kaarfi~lcd~~~iPlv~lvD~pG 372 (523)
T 1on3_A 318 TAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPG 372 (523)
T ss_dssp EEEEEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 7877645955899924763236888706789999999988742877899942787
No 132
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=29.61 E-value=28 Score=14.95 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=33.8
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 45899986088607547765788562102001881675389999999999999998610788169960782357
Q gi|254780779|r 6 FTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQAS 79 (278)
Q Consensus 6 ~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~ 79 (278)
-++++|++ .|.|+-..|+-+.|+- ||... +++-..+++.|.++|.|.+-+|.+
T Consensus 8 ~~~~~~~~------------~~~~r~i~~~GKGGVG-----KTT~a----~~lA~~lA~~G~rVLlvd~DP~~s 60 (329)
T 2woo_A 8 GTLENLLE------------QTSLKWIFVGGKGGVG-----KTTTS----CSLAIQMSKVRSSVLLISTDPAHN 60 (329)
T ss_dssp CSTHHHHH------------CTTCCEEEEECSSSSS-----HHHHH----HHHHHHHHTSSSCEEEEECCTTCH
T ss_pred HHHHHHHC------------CCCCEEEEEECCCCCC-----HHHHH----HHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 13898745------------7771699996998682-----99999----999999996899189995899976
No 133
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=29.16 E-value=28 Score=14.90 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=24.4
Q ss_pred CHHHHHHHHCCCEEEEECCCCCCCHHCC--CEEEECCCC
Q ss_conf 1232123433981454036776700115--203215772
Q gi|254780779|r 171 KLAIQEARRLRIPIVAVVDTNSNPDLVD--YVIPGNDDS 207 (278)
Q Consensus 171 ~~Av~EA~kl~IPvIaivDTn~dp~~id--ypIP~NDds 207 (278)
...+.||--+|+|+|-+-|..--|..++ ..+-++.|.
T Consensus 291 ssgi~EA~~lg~P~Inir~~ter~~~~~~~~~i~v~~~~ 329 (384)
T 1vgv_A 291 GGIQEEAPSLGKPVLVMRDTTERPEAVTAGTVRLVGTDK 329 (384)
T ss_dssp STGGGTGGGGTCCEEEESSCCSCHHHHHHTSEEEECSSH
T ss_pred CCHHHHHHHHCCCEEECCCCCCCHHHHHCCEEEECCCCH
T ss_conf 418888987299789777876671144368059868999
No 134
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=29.15 E-value=16 Score=16.42 Aligned_cols=14 Identities=21% Similarity=0.048 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780779|r 210 SIALFCDLVASAAI 223 (278)
Q Consensus 210 si~l~~~~i~~ai~ 223 (278)
-+.=++..+++++.
T Consensus 244 ~~~~~a~~i~~al~ 257 (334)
T 2r85_A 244 DVIEAGERVVKAAE 257 (334)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999998
No 135
>3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET: TYD; 2.50A {Micromonospora echinospora}
Probab=28.95 E-value=29 Score=14.88 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 9999999999999861078816996078235
Q gi|254780779|r 48 TVPMLQKALQVISDTVARGGRILFVATKSQA 78 (278)
Q Consensus 48 T~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~ 78 (278)
|.-.+..++.+.+++++.|=.|-|+.+....
T Consensus 30 ~~GH~~p~l~la~~L~~rGH~V~v~t~~~~~ 60 (416)
T 3iaa_A 30 SHGLILPTLTVVTELVRRGHRVSYVTAGGFA 60 (416)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEECGGGH
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 5637999999999999788989999682367
No 136
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=28.66 E-value=29 Score=14.84 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCC
Q ss_conf 9999999999861078816996078---23579999998633983142334587323
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMT 104 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LT 104 (278)
.+.++...+. ....-++++|.. ..+.+.+.++|+++|.|.++.-.=.|.+-
T Consensus 194 ~i~~~~~~L~---~akrpvIi~G~~~~~~~~~~~l~~lae~~~~PV~~t~~~~g~~~ 247 (589)
T 2pgn_A 194 DVREAAAQLV---AAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFP 247 (589)
T ss_dssp HHHHHHHHHH---HCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECTTTTTSSC
T ss_pred HHHHHHHHHH---HCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 9999999998---57797575155222322699999999997979785456777668
No 137
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=28.32 E-value=29 Score=14.81 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHH-HHHCCCEEEE
Q ss_conf 5957999438877123212-3433981454
Q gi|254780779|r 158 LPDLMFVVDTNREKLAIQE-ARRLRIPIVA 186 (278)
Q Consensus 158 lP~~iiv~d~~~e~~Av~E-A~kl~IPvIa 186 (278)
.++.+++..|..=.-||.| ++.+|||++-
T Consensus 107 ~~~~iy~CGP~~M~~~v~~~l~~~GvP~~~ 136 (142)
T 3lyu_A 107 DWDLVFMVGPVGDQKQVFEVVKEYGVPMLE 136 (142)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHHTCCBC-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEE
T ss_conf 886999969999999999999981989880
No 138
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=28.19 E-value=29 Score=14.79 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=8.4
Q ss_pred CCCEEEEEECCHHHHHHHHH
Q ss_conf 78816996078235799999
Q gi|254780779|r 65 RGGRILFVATKSQASDCVME 84 (278)
Q Consensus 65 ~gg~ILFVgTk~~~~~~i~~ 84 (278)
++++||+||..+.+.+-++.
T Consensus 11 ~~~~vlvvGgG~vA~rK~~~ 30 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARL 30 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHH
T ss_conf 89839998998999999999
No 139
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open active site loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=28.07 E-value=23 Score=15.48 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=7.3
Q ss_pred HHHHHHHHHHCCCEECCC
Q ss_conf 799999986339831423
Q gi|254780779|r 79 SDCVMEAAKRSAQYCVNS 96 (278)
Q Consensus 79 ~~~i~~~A~~~~~~yV~~ 96 (278)
...+.+.++..+.|.++.
T Consensus 239 ~~~l~~la~~l~~Pv~~~ 256 (565)
T 2nxw_A 239 EAKVAELAQRLGVPVVTT 256 (565)
T ss_dssp HHHHHHHHHHHCSCEEEC
T ss_pred HHHHHHHHHHHCCCEEEC
T ss_conf 799999999867980203
No 140
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=27.91 E-value=30 Score=14.76 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=11.1
Q ss_pred HHHHHHHHCCCEEEEEC
Q ss_conf 23212343398145403
Q gi|254780779|r 172 LAIQEARRLRIPIVAVV 188 (278)
Q Consensus 172 ~Av~EA~kl~IPvIaiv 188 (278)
..+.++...++|+.|||
T Consensus 68 ~~i~~~~~~~~PiLGIC 84 (195)
T 1qdl_B 68 LDVIKYLGKRTPILGVC 84 (195)
T ss_dssp HHHHHHHTTTSCEEEET
T ss_pred HHHHHHHCCCCCEEEEC
T ss_conf 89999855899889982
No 141
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=27.72 E-value=30 Score=14.74 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 9999999999986107881699607823
Q gi|254780779|r 50 PMLQKALQVISDTVARGGRILFVATKSQ 77 (278)
Q Consensus 50 ~~L~~A~~~i~~i~~~gg~ILFVgTk~~ 77 (278)
-.+..++.+.+.+.+.|-.|.|+++...
T Consensus 24 GHv~p~l~la~~L~~rGH~V~v~~~~~~ 51 (424)
T 2iya_A 24 GHVNPSLGIVQELVARGHRVSYAITDEF 51 (424)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECGGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 3799999999999988898999968416
No 142
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp}
Probab=27.14 E-value=31 Score=14.67 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=36.8
Q ss_pred HHHHHHCCCCEEEEEECCHHH------HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999861078816996078235------7999999863398314233458732342666555677
Q gi|254780779|r 58 VISDTVARGGRILFVATKSQA------SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQK 115 (278)
Q Consensus 58 ~i~~i~~~gg~ILFVgTk~~~------~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~ 115 (278)
|....... .+-|+|+...+ +...++.+.+.|.|.+ +|..+..+++........+
T Consensus 95 ~a~~~~~~--gi~~iGps~~~i~~~~dK~~~k~~~~~~Gvpv~--~~~~~~~~~~ee~~~~a~~ 154 (446)
T 3ouz_A 95 FVEICAKH--NIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVI--PGSDGALAGAEAAKKLAKE 154 (446)
T ss_dssp HHHHHHHT--TCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC--SBCSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHC--CCEECCCCHHHHHHHHCCHHHHHHHHHCCCCCC--CCCCCCCCCHHHHHHHHHH
T ss_conf 99999985--996528989999975394989999998699660--4767567999999999997
No 143
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green chemistry, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A*
Probab=26.99 E-value=31 Score=14.66 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=29.8
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 10788169960782357999999863398314233
Q gi|254780779|r 63 VARGGRILFVATKSQASDCVMEAAKRSAQYCVNSK 97 (278)
Q Consensus 63 ~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~R 97 (278)
-..|++|+.||+...+.+++.+.|..+..-++..|
T Consensus 175 ~~~gKrV~ViG~G~Sa~qi~~~la~~a~~v~v~~R 209 (540)
T 3gwf_A 175 SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVR 209 (540)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEES
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHCCEEEEEEE
T ss_conf 35675268971586401121345642140344530
No 144
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP, structural genomics; HET: ATP; 2.50A {Thermococcus kodakarensis KOD1} SCOP: c.30.1.8 d.142.1.9
Probab=26.85 E-value=28 Score=14.97 Aligned_cols=23 Identities=4% Similarity=-0.099 Sum_probs=8.6
Q ss_pred EEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 03215772689999999999999
Q gi|254780779|r 200 VIPGNDDSSRSIALFCDLVASAA 222 (278)
Q Consensus 200 pIP~NDds~~si~l~~~~i~~ai 222 (278)
|.+..+...+-+.=+...+.++.
T Consensus 216 p~~l~~~~~~~i~e~a~~~~~a~ 238 (320)
T 2pbz_A 216 AIALRESLLPQLYDYGLAFVRTM 238 (320)
T ss_dssp ECEECGGGHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98999899999999999999997
No 145
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=26.56 E-value=31 Score=14.61 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=8.5
Q ss_pred HHHHHHCCCEEEEE
Q ss_conf 21234339814540
Q gi|254780779|r 174 IQEARRLRIPIVAV 187 (278)
Q Consensus 174 v~EA~kl~IPvIai 187 (278)
+.||-..|.|+|++
T Consensus 310 ~~Eal~~G~P~v~i 323 (402)
T 3ia7_A 310 VLEAFAAGVPLVLV 323 (402)
T ss_dssp HHHHHHTTCCEEEC
T ss_pred HHHHHHCCCCEEEE
T ss_conf 99999809998995
No 146
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1
Probab=26.15 E-value=29 Score=14.84 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
Q ss_conf 66556777643443322113595799943887712
Q gi|254780779|r 138 IERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKL 172 (278)
Q Consensus 138 ~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~ 172 (278)
+.+-...+.+.++.--.|++.|.+.|+.|...+..
T Consensus 66 L~~~~~~ir~~l~~~l~lr~~P~L~F~~D~s~e~~ 100 (116)
T 1pa4_A 66 FNQAKGVFSRVLAHNLYLAKAVQIHFVKDKAIDNA 100 (116)
T ss_dssp HHHTHHHHHHHHHTTCCCGGGCCCEECSSSTTSSC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH
T ss_conf 99989999999996768844987899978977899
No 147
>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo- enzyme, AMP, hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A
Probab=26.08 E-value=32 Score=14.55 Aligned_cols=98 Identities=21% Similarity=0.192 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHH--HHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999998610788169960782357--999999863398314233458732342666555677899887630121267
Q gi|254780779|r 53 QKALQVISDTVARGGRILFVATKSQAS--DCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGF 130 (278)
Q Consensus 53 ~~A~~~i~~i~~~gg~ILFVgTk~~~~--~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~ 130 (278)
--|..|+..+.++|..|.||..+.+.. ..++...+..|.|+++..=+- |+-. .-.+.
T Consensus 91 pga~efl~~~~~~Gv~IfyITnR~~~~~e~T~~nL~k~lg~p~~~~~~vl--l~~~-------------------~s~K~ 149 (211)
T 2b82_A 91 EVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVI--FAGD-------------------KPGQN 149 (211)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECSCCCSSCCHHHHHHHHTTCCTTTBCCCE--ECCC-------------------CTTCC
T ss_pred CCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEE--EECC-------------------CCCHH
T ss_conf 20999999999769859998088466689999999997299856767558--6269-------------------88738
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 746788766556777643443322113595799943887712321234339814540367
Q gi|254780779|r 131 TKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 131 tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDT 190 (278)
+++ ..++++ +| .+++=|.-.+..|-+||.--+|.++-.-++
T Consensus 150 ~rr---------~~ik~y--~I--------vl~~GD~l~Df~aa~eagi~~iRi~r~~ns 190 (211)
T 2b82_A 150 TKS---------QWLQDK--NI--------RIFYGDSDNDITAARDVGARGIRILRASNS 190 (211)
T ss_dssp CSH---------HHHHHT--TE--------EEEEESSHHHHHHHHHTTCEEEECCCCTTC
T ss_pred HHH---------HHHHHC--CE--------EEEECCCHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 899---------999980--95--------899659778888898769985466417887
No 148
>2wt9_A Nicotinamidase; hydrolase, pyrazinamidase; 1.65A {Acinetobacter baumannii} PDB: 2wta_A*
Probab=25.90 E-value=26 Score=15.13 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=25.7
Q ss_pred CCEEEEECCCCCC---HHHHHHHHCCCEEEEECCCCC
Q ss_conf 9579994388771---232123433981454036776
Q gi|254780779|r 159 PDLMFVVDTNREK---LAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 159 P~~iiv~d~~~e~---~Av~EA~kl~IPvIaivDTn~ 192 (278)
.+-|||.....+. ..+++|...|..|+-+.|.-+
T Consensus 167 i~~lii~G~~Td~CV~~Ta~dA~~~Gy~V~vv~Da~a 203 (235)
T 2wt9_A 167 IDTVYVVGIATDFCVAWTALDAVKQGFKTLVIEDACK 203 (235)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9989999846672898849999987996999587836
No 149
>3lqy_A Putative isochorismatase hydrolase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.75A {Oleispira antarctica}
Probab=25.47 E-value=33 Score=14.48 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=27.8
Q ss_pred CCEEEEECCCCCCH---HHHHHHHCCCEEEEECCCCCCC
Q ss_conf 95799943887712---3212343398145403677670
Q gi|254780779|r 159 PDLMFVVDTNREKL---AIQEARRLRIPIVAVVDTNSNP 194 (278)
Q Consensus 159 P~~iiv~d~~~e~~---Av~EA~kl~IPvIaivDTn~dp 194 (278)
-+-|+|+....+.. .+++|...|..++-+.|.-+..
T Consensus 113 i~~lvv~G~~T~~CV~~Ta~~a~~~gy~v~vv~Da~a~~ 151 (190)
T 3lqy_A 113 IKKLVIVGAMTHMAIDAVTRAAEDLGYECAVAHDACATL 151 (190)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHHHTCEEEEEEEEEEBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 775998521237079999999998799799977100788
No 150
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=25.35 E-value=33 Score=14.46 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCC---HHHHHHHHC-CCEEEEECCCC
Q ss_conf 59579994388771---232123433-98145403677
Q gi|254780779|r 158 LPDLMFVVDTNREK---LAIQEARRL-RIPIVAVVDTN 191 (278)
Q Consensus 158 lP~~iiv~d~~~e~---~Av~EA~kl-~IPvIaivDTn 191 (278)
-||.++++.|+--. ..-||..+- |||+|-|.|--
T Consensus 64 ~pDf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGG
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 89989997899889995679999974799879982786
No 151
>1wyw_A TDG, G/T mismatch-specific thymine DNA glycosylase; hydrolase; 2.10A {Homo sapiens} SCOP: c.18.1.2 PDB: 2d07_A 2rba_A*
Probab=25.29 E-value=31 Score=14.63 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=22.4
Q ss_pred HHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECC
Q ss_conf 86107881699607823579999998633983142
Q gi|254780779|r 61 DTVARGGRILFVATKSQASDCVMEAAKRSAQYCVN 95 (278)
Q Consensus 61 ~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~ 95 (278)
.+...+-+|||||+.|... +.++|.||.+
T Consensus 17 d~~~p~~~vLivG~~PG~~------S~~~G~~ya~ 45 (230)
T 1wyw_A 17 DILTFNLDIVIIGINPGLM------AAYKGHHYPG 45 (230)
T ss_dssp CBCCSSCSEEEEESSCCHH------HHHHTSSSCS
T ss_pred CCCCCCCCEEEEECCCCHH------HHHCCCCCCC
T ss_conf 8779999789984288966------7843888878
No 152
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=25.24 E-value=33 Score=14.45 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=19.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHCC---CEEEEECCC
Q ss_conf 113595799943887712321234339---814540367
Q gi|254780779|r 155 MGGLPDLMFVVDTNREKLAIQEARRLR---IPIVAVVDT 190 (278)
Q Consensus 155 m~~lP~~iiv~d~~~e~~Av~EA~kl~---IPvIaivDT 190 (278)
....|+++|+.+-..-.-+++.+...| +.++|+-++
T Consensus 179 ~~~~~~ai~~~~d~~a~g~~~a~~~~g~~~~~vig~d~~ 217 (271)
T 2dri_A 179 AHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT 217 (271)
T ss_dssp HCTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEEECC
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 467972899457599999999999858986828615798
No 153
>1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium} SCOP: c.56.1.2
Probab=25.22 E-value=17 Score=16.30 Aligned_cols=43 Identities=30% Similarity=0.519 Sum_probs=31.9
Q ss_pred CCCEEEEECCC--------------------------CCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC
Q ss_conf 59579994388--------------------------7712321234339814540367767001152032157
Q gi|254780779|r 158 LPDLMFVVDTN--------------------------REKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND 205 (278)
Q Consensus 158 lP~~iiv~d~~--------------------------~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND 205 (278)
.||+|+++|.- +...++.| ..|||||||| .=|+.||-+.-+||
T Consensus 186 kPDlVIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~-etLGVPVIAI----GVPTVVdAatI~~D 254 (371)
T 1c8b_A 186 NPDFIIAIDALAARSIERVNATIQISDSGIHPGSGVGNKRKEISY-ETLGIPVIAI----GIPTVVDAVSITSD 254 (371)
T ss_dssp CCSEEEEEEEECCSSGGGSSSEEEEETTCBCSCSSSSCCCCBSSS-CCC-------------CCCEEEEEEECC
T ss_pred CCCEEEEECHHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCH-HHCCCCEEEE----CCCCEECHHHHHHH
T ss_conf 899999942212586011467478768786888786765441598-7819988997----68806524999999
No 154
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=24.44 E-value=34 Score=14.36 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=13.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 957999438877123212343398
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRI 182 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~I 182 (278)
|+++|+.+-..-.-++..+...|+
T Consensus 232 ~~ai~~~~d~~a~g~~~~l~~~g~ 255 (330)
T 3ctp_A 232 YDGIFVFNDIAAATVMRALKKRGV 255 (330)
T ss_dssp SSEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCCCEECCHHHHHHHHHHHHHCCC
T ss_conf 985232378999999999998199
No 155
>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=23.81 E-value=35 Score=14.28 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=31.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC--E----EEEECCCCC----CCHHCCCEEEECCCCHHHHHHHHHH
Q ss_conf 5957999438877123212343398--1----454036776----7001152032157726899999999
Q gi|254780779|r 158 LPDLMFVVDTNREKLAIQEARRLRI--P----IVAVVDTNS----NPDLVDYVIPGNDDSSRSIALFCDL 217 (278)
Q Consensus 158 lP~~iiv~d~~~e~~Av~EA~kl~I--P----vIaivDTn~----dp~~idypIP~NDds~~si~l~~~~ 217 (278)
-|++||+.+-.--.-+++-++.+|+ | |+|+-|+.- .|..-++-.|.-.=+..++++++..
T Consensus 177 ~~~ai~~~~d~~A~g~~~al~~~g~~iP~di~vig~d~~~~~~~~~p~lttv~~~~~~~g~~Av~~l~~~ 246 (277)
T 3e61_A 177 SIDSIICSNDLLAINVLGIVQRYHFKVPAEIQIIGYDNIPFSEMTYPQITTIDQSAYHLGEIAVSQLLGL 246 (277)
T ss_dssp TCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCCGGGGTSSSCCBEEECCHHHHHHHHHHHHC--
T ss_pred CCCEEECCCHHHHCCHHHHHHHCCCCCCCEEEEEEECCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 9776760613655260799997499889558999978878998228995599829999999999999998
No 156
>2h0r_A Nicotinamidase; NAD+ salvage pathway, hydrolase; 2.90A {Saccharomyces cerevisiae}
Probab=23.66 E-value=36 Score=14.26 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=25.1
Q ss_pred CCEEEEECCCCCC---HHHHHHHHCCCEEEEECCCC
Q ss_conf 9579994388771---23212343398145403677
Q gi|254780779|r 159 PDLMFVVDTNREK---LAIQEARRLRIPIVAVVDTN 191 (278)
Q Consensus 159 P~~iiv~d~~~e~---~Av~EA~kl~IPvIaivDTn 191 (278)
-+-|+|.....+. ..+++|..+|..|+=+-|.-
T Consensus 154 i~~liv~G~~td~CV~~Ta~~a~~~G~~v~vv~Da~ 189 (216)
T 2h0r_A 154 TDEVYIVGVALEYCVKATAISAAELGYKTTVLLDYT 189 (216)
T ss_dssp CSEEEEEESCTTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECHHC
T ss_conf 986999627543399999999997799599970311
No 157
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=23.24 E-value=36 Score=14.21 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=19.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 95799943887712321234339814540367
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIaivDT 190 (278)
.+.++++.+..............+|+|.....
T Consensus 119 ~~g~Ii~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (339)
T 3h5o_A 119 PDGVLITGLSHAEPFERILSQHALPVVYMMDL 150 (339)
T ss_dssp CSEEEEECSCCCTTHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCCEEECCCC
T ss_conf 87157520443077899998538960102345
No 158
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=23.17 E-value=36 Score=14.20 Aligned_cols=62 Identities=10% Similarity=0.104 Sum_probs=30.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCE------EEEECCCC----CCCHHCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 359579994388771232123433981------45403677----670011520321577268999999999
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIP------IVAVVDTN----SNPDLVDYVIPGNDDSSRSIALFCDLV 218 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IP------vIaivDTn----~dp~~idypIP~NDds~~si~l~~~~i 218 (278)
.-|+++|+.+-..-.-+++-+...|+. ++|+=|+. ..|..-++-.|...=+.+++++++..+
T Consensus 180 ~~~~ai~~~~d~~A~g~~~~l~~~g~~iP~di~vvg~d~~~~~~~~~p~lttv~~~~~~~g~~av~~l~~~i 251 (275)
T 3d8u_A 180 SSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSMGEHAYPSLTSAEFDYERMGTKAAEKLLHAI 251 (275)
T ss_dssp TTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEESSCCHHHHTSSSCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 244322307889999999999973887886069999788188872589851998599999999999999996
No 159
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=22.99 E-value=23 Score=15.53 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCCCEEEEECC-CCCCHHHHHHHHCCCEEEEE
Q ss_conf 34433221135957999438-87712321234339814540
Q gi|254780779|r 148 ALDGIRDMGGLPDLMFVVDT-NREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 148 ~lgGi~~m~~lP~~iiv~d~-~~e~~Av~EA~kl~IPvIai 187 (278)
++.-+.++...||++++.-| ..-.-+++||..+|++.+.+
T Consensus 59 ~y~sl~dip~~iDlvvi~~p~~~~~~il~e~~~~g~k~v~~ 99 (138)
T 1y81_A 59 CYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWF 99 (138)
T ss_dssp CBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEE
T ss_conf 44420127875307999817888799999997569997896
No 160
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=22.44 E-value=38 Score=14.11 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=19.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHCCCEEEE
Q ss_conf 11359579994388771232123433981454
Q gi|254780779|r 155 MGGLPDLMFVVDTNREKLAIQEARRLRIPIVA 186 (278)
Q Consensus 155 m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIa 186 (278)
.++--|.+|+=+ .....-++.|.++|||||.
T Consensus 67 Vt~~t~~LV~G~-~~g~sK~~kA~~lgI~Ii~ 97 (109)
T 2k6g_A 67 VSKKTNYLVMGR-DSGQSKSDKAAALGTKIID 97 (109)
T ss_dssp CCTTCCEEEECB-CCCHHHHHHHHHHTCEEEC
T ss_pred CCCCCCEEEEEC-CCCHHHHHHHHHCCCCEEC
T ss_conf 146656899818-9997999999983996825
No 161
>1xww_A Low molecular weight phosphotyrosine protein phosphatase; hydrolase; 1.63A {Homo sapiens} PDB: 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A 5pnt_A*
Probab=22.40 E-value=38 Score=14.10 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=15.0
Q ss_pred CCCEEEEEECCHHHHHHHHHH
Q ss_conf 788169960782357999999
Q gi|254780779|r 65 RGGRILFVATKSQASDCVMEA 85 (278)
Q Consensus 65 ~gg~ILFVgTk~~~~~~i~~~ 85 (278)
.-++||||+|...++..+.+.
T Consensus 4 ~~k~VLfVCtgN~cRS~mAE~ 24 (157)
T 1xww_A 4 ATKSVLFVCLGNICRSPIAEA 24 (157)
T ss_dssp CCEEEEEEESSSSSHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHH
T ss_conf 888799991986899999999
No 162
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=22.08 E-value=33 Score=14.50 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=16.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45873234266655567789988763
Q gi|254780779|r 98 WLGGMMTNWKTVSQSIQKLRDLEELL 123 (278)
Q Consensus 98 WlGG~LTN~~ti~~si~~l~~l~~~~ 123 (278)
++=|||||+.. -.+.|.+..-++.
T Consensus 12 yI~GMLtN~~s--lpleRIh~mLkmf 35 (74)
T 1ldd_A 12 FIEGMLTNLGA--MKLHKIHSFLKIT 35 (74)
T ss_dssp HHHHHHHHHCS--EEHHHHHHHHHHH
T ss_pred HHHHHHHCCCC--CCHHHHHHHHHHH
T ss_conf 99999976787--8799999999987
No 163
>2c2q_A G/U mismatch-specific DNA glycosylase; radiation resistance, DNA repair enzymes, uracil-DNA glycosylase, MUG, hydrolase; 1.7A {Deinococcus radiodurans} PDB: 2c2p_A
Probab=21.92 E-value=38 Score=14.04 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=21.7
Q ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECC
Q ss_conf 6107881699607823579999998633983142
Q gi|254780779|r 62 TVARGGRILFVATKSQASDCVMEAAKRSAQYCVN 95 (278)
Q Consensus 62 i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~ 95 (278)
+...+-+|||||+.+... ..+.|.||++
T Consensus 21 ~~~p~~rilivG~aPG~~------s~~~G~~f~~ 48 (199)
T 2c2q_A 21 VLQPGLTLVLVGTAPSGI------SARARAYYAN 48 (199)
T ss_dssp BCCTTCSEEEEESCCCHH------HHHHTSSSCS
T ss_pred CCCCCCCEEEEECCCCHH------HHHCCCCCCC
T ss_conf 879999789982697988------9966985368
No 164
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1
Probab=21.84 E-value=21 Score=15.77 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=27.7
Q ss_pred CCEEEEECCCCCCHHHHHHHH-CCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 957999438877123212343-398145403677670011520321577268999999999999999
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARR-LRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAID 224 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~k-l~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~ 224 (278)
-|+|+++|...-.....-+-. ..-.+..+ + ++..|+=|.=++ |+.+.++-.+....++.++
T Consensus 80 aDlIl~M~~~~~~~l~~~~p~~~~~~~~~~-~---~~~~I~DPy~~~-~~f~~~~~~i~~~i~~ll~ 141 (146)
T 1p8a_A 80 FDVIAALDQSILSDINSMKPSNCRAKVVLF-N---PPNGVDDPYYSS-DGFPTMFASISKEMKPFLT 141 (146)
T ss_dssp CSEEEESSHHHHHHHHHHCCSSCSCEEEEC-S---CTTSSCCCSSSS-SSHHHHHHHHHHTTHHHHH
T ss_pred CCEEEECCHHHHHHHHHHCCCCCCEEEEEC-C---CCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHH
T ss_conf 899999188899999865673314078724-8---877899999986-6999999999999999999
No 165
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, hydrolase; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=21.69 E-value=39 Score=14.01 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEC------CH---HHHHHHHHHHHHCCCEE
Q ss_conf 999999999999986107881699607------82---35799999986339831
Q gi|254780779|r 48 TVPMLQKALQVISDTVARGGRILFVAT------KS---QASDCVMEAAKRSAQYC 93 (278)
Q Consensus 48 T~~~L~~A~~~i~~i~~~gg~ILFVgT------k~---~~~~~i~~~A~~~~~~y 93 (278)
|...|.+++.-|.....+.--|++-|= .. .+.+.+.....+.+.|+
T Consensus 49 ~~~~l~~~l~~i~~~~~~pD~vvitGDl~~~g~~~~y~~~~~~l~~~~~~~~~pv 103 (330)
T 3ib7_A 49 ADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAEL 103 (330)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 9999999999998229899999989877899999999999999999875249977
No 166
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=21.49 E-value=39 Score=13.99 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHH-HHCCCEEEEECCCC
Q ss_conf 9579994388771232123-43398145403677
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEA-RRLRIPIVAVVDTN 191 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA-~kl~IPvIaivDTn 191 (278)
.|.+|+..|..=..+|.|. +.+|||++.-+++.
T Consensus 113 ~d~vy~CGP~~Mm~~v~~~l~~~Gvp~~vsl~~~ 146 (158)
T 3lrx_A 113 WDLVFMVGPVGDQKQVFEVVKEYGVPMKVDLHPI 146 (158)
T ss_dssp CSEEEEESCHHHHHHHHHHHGGGTCCEEECC---
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9799999999999999999998699899966873
No 167
>3mcw_A Putative hydrolase; isochorismatase family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.06A {Chromobacterium violaceum}
Probab=21.45 E-value=39 Score=13.98 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=27.0
Q ss_pred CCEEEEECCCCCC---HHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 9579994388771---232123433981454036776700
Q gi|254780779|r 159 PDLMFVVDTNREK---LAIQEARRLRIPIVAVVDTNSNPD 195 (278)
Q Consensus 159 P~~iiv~d~~~e~---~Av~EA~kl~IPvIaivDTn~dp~ 195 (278)
-+-|+|.....+. ..+++|..+|.-|+-+-|.-++.+
T Consensus 113 i~~lii~Gv~T~~CV~~Ta~~a~~~G~~v~vv~Da~~s~~ 152 (198)
T 3mcw_A 113 WLELVVAGVSTSNSVEATVRMAGNLGFAVCLAEDGCFTFD 152 (198)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECBC
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 9889991225674389999999987997999675635577
No 168
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, thiamin thiazolone diphosphate, inhibitor; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=21.20 E-value=32 Score=14.56 Aligned_cols=20 Identities=15% Similarity=-0.036 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHCCCEECCC
Q ss_conf 35799999986339831423
Q gi|254780779|r 77 QASDCVMEAAKRSAQYCVNS 96 (278)
Q Consensus 77 ~~~~~i~~~A~~~~~~yV~~ 96 (278)
.+...+.+.+++++.|++..
T Consensus 215 ~~~~~~~~lae~l~~pv~~~ 234 (528)
T 1q6z_A 215 NANADCVMLAERLKAPVWVA 234 (528)
T ss_dssp TCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHHHHHCCCCEEC
T ss_conf 66767899999743773010
No 169
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A
Probab=21.01 E-value=34 Score=14.35 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=14.5
Q ss_pred HHHH-HHHCCCEEEEECCCC
Q ss_conf 3212-343398145403677
Q gi|254780779|r 173 AIQE-ARRLRIPIVAVVDTN 191 (278)
Q Consensus 173 Av~E-A~kl~IPvIaivDTn 191 (278)
+|+. |...|||+|.++||-
T Consensus 460 fI~~lcd~~~LPLv~LvDtp 479 (758)
T 3k8x_A 460 AINDFNNGEQLPMMILANWR 479 (758)
T ss_dssp HHHHHHHTSCCCEEECCCCC
T ss_pred HHHHHHHHCCCCEEEEEECC
T ss_conf 99999861288669997188
No 170
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=20.95 E-value=40 Score=13.91 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=27.7
Q ss_pred HHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHCCCEEEEE
Q ss_conf 34433221135957999438877-12321234339814540
Q gi|254780779|r 148 ALDGIRDMGGLPDLMFVVDTNRE-KLAIQEARRLRIPIVAV 187 (278)
Q Consensus 148 ~lgGi~~m~~lP~~iiv~d~~~e-~~Av~EA~kl~IPvIai 187 (278)
++..+.++..-||+++++-+... .-+++||..+|++.+.+
T Consensus 60 ~y~sl~~ip~~vDlvvi~~p~~~v~~~~~~~~~~g~k~v~~ 100 (145)
T 2duw_A 60 GYATLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWL 100 (145)
T ss_dssp CCSSTTTCSSCCSEEECCSCSTHHHHHHHHHHHHTCCEEEC
T ss_pred EECCHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 75246458998649999637325899999999749987873
No 171
>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens}
Probab=20.92 E-value=40 Score=13.91 Aligned_cols=168 Identities=13% Similarity=0.115 Sum_probs=76.3
Q ss_pred CCCCCCCHHHHHHCCCC-CCCCCCCCCCCCCCCCCCC-CCCEEEECHHH---HHHHHHHHHHHHHHHHCC-CCEE-EEEE
Q ss_conf 98662458999860886-0754776578856210200-18816753899---999999999999986107-8816-9960
Q gi|254780779|r 1 MALPQFTIRQLLESGVQ-FGHRNFLWNPKMERYIFCE-RNNTHIIDLSQ---TVPMLQKALQVISDTVAR-GGRI-LFVA 73 (278)
Q Consensus 1 m~m~~~t~~~Ll~ag~H-~Gh~~~~wnPkM~~yI~g~-rngihIIdL~k---T~~~L~~A~~~i~~i~~~-gg~I-LFVg 73 (278)
|+|..+ ++.|+++|+- +||. .+.. +..-+-||+.. .-..++..+..+.+...+ +..+ .+||
T Consensus 1 ~~~~~l-~~~L~d~~a~k~G~F-----------~l~SG~~S~~YiD~~~~l~~p~~~~~l~~~la~~i~~~~~~~d~Ivg 68 (205)
T 2wns_A 1 MALGPL-VTGLYDVQAFKFGDF-----------VLKSGLSSPIYIDLRGIVSRPRLLSQVADILFQTAQNAGISFDTVCG 68 (205)
T ss_dssp -CHHHH-HHHHHTTTCEEEEEE-----------ECTTSCEEEEEECGGGGGGSHHHHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred CCHHHH-HHHHHHCCCEEECCE-----------EECCCCCCCEEEECHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 987999-999988899687957-----------85775768867989677369999999999999988860888875871
Q ss_pred CCHHHHHHHHHHHHHCCCEECCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 782357999999863398314233---4587323426665556778998876301-212677467887665567776434
Q gi|254780779|r 74 TKSQASDCVMEAAKRSAQYCVNSK---WLGGMMTNWKTVSQSIQKLRDLEELLNK-ENQGFTKKERLNIERKRDKLKRAL 149 (278)
Q Consensus 74 Tk~~~~~~i~~~A~~~~~~yV~~R---WlGG~LTN~~ti~~si~~l~~l~~~~~~-~~~~~tkKe~~~~~r~~~kl~k~l 149 (278)
.-..+-.+-...|...+.|++.-| .-.|+..-+. ..+..=+.. -..+. ...+-|..+.+..-| ..
T Consensus 69 ~~~gGipla~~va~~l~~p~~~~RK~~k~~g~~~~~~---g~i~~g~~V-lIVDDvitTG~T~~~ai~~l~-------~~ 137 (205)
T 2wns_A 69 VPYTALPLATVICSTNQIPMLIRRKETKDYGTKRLVE---GTINPGETC-LIIEDVVTSGSSVLETVEVLQ-------KE 137 (205)
T ss_dssp CTTTTHHHHHHHHHHHTCCEEEECCTTTTSSSCCSEE---SCCCTTCBE-EEEEEEESSSHHHHHHHHHHH-------HT
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEC---CCCCCCCEE-EEEEEEHHCCCCHHHHHHHHH-------HC
T ss_conf 2022189989888753899346762036666311466---876666459-999610212706798999998-------68
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEE
Q ss_conf 4332211359579994388771232123433981454036776700115203
Q gi|254780779|r 150 DGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVI 201 (278)
Q Consensus 150 gGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypI 201 (278)
|+ ..-.+++++|-.. -+...-...|||+.++++-+ +.++|..
T Consensus 138 G~-----~v~~v~vivdr~~--~~~~~l~~~gi~~~sL~~l~---dl~~~~~ 179 (205)
T 2wns_A 138 GL-----KVTDAIVLLDREQ--GGKDKLQAHGIRLHSVCTLS---KMLEILE 179 (205)
T ss_dssp TC-----BCCEEEEEEECCS--SHHHHHHTTTCEEEEEEEHH---HHHHHHH
T ss_pred CC-----EEEEEEEEEECCC--CHHHHHHHCCCCEEEECCHH---HHHHHHH
T ss_conf 98-----8999999997761--65999997799499975099---9999999
No 172
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} PDB: 3e6r_A
Probab=20.91 E-value=40 Score=13.91 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-H----HHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 899999999999999986107881699607823-5----79999998633983142334587323426665556778998
Q gi|254780779|r 45 LSQTVPMLQKALQVISDTVARGGRILFVATKSQ-A----SDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119 (278)
Q Consensus 45 L~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~-~----~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l 119 (278)
..+..+.+..|..|+..+...||.+-|-..... . ..++. . +--.|...+++..++..+.++
T Consensus 43 ~~~a~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~~~~~~~~~-~-------------~~~al~~E~~v~~~~~~l~~~ 108 (168)
T 3e6s_A 43 LAESAEEREHGLGFVDFANKRNIPIELQAVPAPVSCAEWSSPED-V-------------WQSILELEQANTRSLLNLAEA 108 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCGGGTCCSHHH-H-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH-H-------------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 99989999999999999997458876666678875334487888-9-------------999999999999999999999
Q ss_pred HH-HHHCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 87-630121267746788-76655677764344332211359579994388
Q gi|254780779|r 120 EE-LLNKENQGFTKKERL-NIERKRDKLKRALDGIRDMGGLPDLMFVVDTN 168 (278)
Q Consensus 120 ~~-~~~~~~~~~tkKe~~-~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~ 168 (278)
-. ..+.....|-. +.+ .-..+..++...+.-++.+..-|.+++++|..
T Consensus 109 A~~~~D~~t~~fl~-~fl~eQ~ee~~~~~~~l~~l~~~~~~~~~l~~~D~e 158 (168)
T 3e6s_A 109 ASTCHDFAVMAFLN-PFHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVV 158 (168)
T ss_dssp HHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHS
T ss_pred HHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 98779985999999-999999999999999999999828983347774140
No 173
>3cf4_A Acetyl-COA decarbonylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri}
Probab=20.84 E-value=40 Score=13.90 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=24.6
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCC
Q ss_conf 13595799943887712321234339814540367
Q gi|254780779|r 156 GGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 156 ~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDT 190 (278)
++.||++++--+---.-...+|.+.++|+|+..|-
T Consensus 311 TGavDa~VvD~QCi~P~l~~~A~~~~tkvItTs~k 345 (807)
T 3cf4_A 311 SGMPDVIVVDEQCVRGDIVPEAQKLKIPVIASNPK 345 (807)
T ss_dssp HTCCSEEEECSSSCCTTHHHHHHHTTCCEEECSTT
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHCCEEEEECCH
T ss_conf 59975499865467876199999729839982511
No 174
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-binding, multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=20.74 E-value=17 Score=16.41 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=45.3
Q ss_pred CCCCCCCCCC------------------CCCCCCCCCCCCCCCCEEEECHHHHHHHHHH-------------------HH
Q ss_conf 0886075477------------------6578856210200188167538999999999-------------------99
Q gi|254780779|r 14 SGVQFGHRNF------------------LWNPKMERYIFCERNNTHIIDLSQTVPMLQK-------------------AL 56 (278)
Q Consensus 14 ag~H~Gh~~~------------------~wnPkM~~yI~g~rngihIIdL~kT~~~L~~-------------------A~ 56 (278)
-|+|.|||.= ..+|.=..|+...+....|.++++-...|.. |-
T Consensus 25 DGvHlGHq~Li~~~~~~A~~~~~~~~viTF~phP~~~~~~~~~~~~l~~~~ek~~~l~~~gid~~~~i~F~~~~a~ls~e 104 (338)
T 2x0k_A 25 DGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESFGIDGVLVIDFTRELSGTSPE 104 (338)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHTTCSEEEEECTTTSSSSCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCHH
T ss_conf 33248999999999999997299889999459899980976775012457999999875499889995027876327988
Q ss_pred HHHHHHHCC--CCEEEEEECCHH-------HHHHHHHHHHH
Q ss_conf 999986107--881699607823-------57999999863
Q gi|254780779|r 57 QVISDTVAR--GGRILFVATKSQ-------ASDCVMEAAKR 88 (278)
Q Consensus 57 ~~i~~i~~~--gg~ILFVgTk~~-------~~~~i~~~A~~ 88 (278)
.|+..+..+ +-+.++||..-. ..+..++++..
T Consensus 105 ~Fi~~il~~~l~~k~ivvG~Df~FG~~r~G~~~~L~~~~~~ 145 (338)
T 2x0k_A 105 KYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQS 145 (338)
T ss_dssp HHHHHCCCCCTCEEEEEEETTCEESGGGCEEHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHCCC
T ss_conf 89999987303733999945544430047769999985456
No 175
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis, hydrolase; 1.91A {Thermoanaerobacter tengcongensis MB4}
Probab=20.69 E-value=13 Score=17.06 Aligned_cols=36 Identities=11% Similarity=0.291 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHH
Q ss_conf 7765788562102001881675389999999999999
Q gi|254780779|r 22 NFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQV 58 (278)
Q Consensus 22 ~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~ 58 (278)
.+..+|.|+|.|++.|.+-.. -.+-|+..++.|+..
T Consensus 3 ~~~~~~~~~pliiaHRG~~~~-~pENTl~af~~a~~~ 38 (252)
T 2pz0_A 3 HHHHHHSMKTLVIAHRGDSKN-VPENTIAAFKRAMEL 38 (252)
T ss_dssp --------CCEEEEETTTTTT-SCTTSHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEECCCCCCC-CCCHHHHHHHHHHHC
T ss_conf 553556677179988999989-972079999999985
No 176
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=20.52 E-value=41 Score=13.86 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=16.2
Q ss_pred CCEEEEEC-C-----CCCCHHHHHHHHCCCEEEEEC
Q ss_conf 95799943-8-----877123212343398145403
Q gi|254780779|r 159 PDLMFVVD-T-----NREKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 159 P~~iiv~d-~-----~~e~~Av~EA~kl~IPvIaiv 188 (278)
||.||+.. | ..+...+..+...++|+.|||
T Consensus 48 ~dgiILsgGPg~p~~~~~~~~~~~~~~~~iPiLGIC 83 (192)
T 1i1q_B 48 NPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGIC 83 (192)
T ss_dssp SEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEET
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHHC
T ss_conf 696998199987143313379999985699814538
No 177
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=20.51 E-value=41 Score=13.86 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=38.9
Q ss_pred HHHHHHCCC--CCCCCCCCCC-----------CCCCCCCCC-CCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 899986088--6075477657-----------885621020-01881675389999999999999998610788169960
Q gi|254780779|r 8 IRQLLESGV--QFGHRNFLWN-----------PKMERYIFC-ERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVA 73 (278)
Q Consensus 8 ~~~Ll~ag~--H~Gh~~~~wn-----------PkM~~yI~g-~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVg 73 (278)
.++|-+.|+ ++||....|. |.-.|.+-. ...|+.|+.--. .+..++. ......|-.-|
T Consensus 50 ~~~L~~~Gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~l~~a~~~gi~v~~~~e------~~~~~~~--~~~~~~IaITG 121 (469)
T 1j6u_A 50 TAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDDNPEIVRARMERVPIENRLH------YFRDTLK--REKKEEFAVTG 121 (469)
T ss_dssp HHHHHHTTCCEESSCCTTSCCCCSEEEECTTCCTTCHHHHHHHHTTCCEEEHHH------HHHHHHH--HHCCCEEEEEC
T ss_pred HHHHHHCCCEEECCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEHHH------HHHHHHH--HCCCCEEEEEC
T ss_conf 999998889998898978879998999889689888999999985996871999------9998776--46676799968
Q ss_pred CCH--HHHHHHHHHHHHCCC
Q ss_conf 782--357999999863398
Q gi|254780779|r 74 TKS--QASDCVMEAAKRSAQ 91 (278)
Q Consensus 74 Tk~--~~~~~i~~~A~~~~~ 91 (278)
|+= .....+......+|.
T Consensus 122 TnGKTTTt~ml~~iL~~~g~ 141 (469)
T 1j6u_A 122 TDGKTTTTAMVAHVLKHLRK 141 (469)
T ss_dssp SSSHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHCCCCC
T ss_conf 99614699999998605454
No 178
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=20.45 E-value=41 Score=13.85 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH--HCCCEEEEECCCC
Q ss_conf 766556777643443322113595799943887712321234--3398145403677
Q gi|254780779|r 137 NIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEAR--RLRIPIVAVVDTN 191 (278)
Q Consensus 137 ~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~--kl~IPvIaivDTn 191 (278)
.+.++...|+..|..+ |+.|+++|+...-..++.|. -+|++-=-++-.+
T Consensus 16 aL~~s~~~l~~il~~~------~~gI~~~D~~g~i~~~N~~~~~~~g~~~~~~ig~~ 66 (152)
T 3mxq_A 16 AMAKSRLLLSELLDQL------SFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKN 66 (152)
T ss_dssp HHHHHHHHHHHHHHHH------CCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSB
T ss_pred HHHHHHHHHHHHHHHH------CHHEEEECCCCCEEEEECCCHHHHCCCHHHHCCCC
T ss_conf 9999999999999701------80419996998299992543577598899963887
No 179
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=20.43 E-value=36 Score=14.24 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECC----HHHHHHHHHHHHHCCCEECCCCC
Q ss_conf 99999999999861078816996078----23579999998633983142334
Q gi|254780779|r 50 PMLQKALQVISDTVARGGRILFVATK----SQASDCVMEAAKRSAQYCVNSKW 98 (278)
Q Consensus 50 ~~L~~A~~~i~~i~~~gg~ILFVgTk----~~~~~~i~~~A~~~~~~yV~~RW 98 (278)
..+.+|...|. ...+-+++||-. ..+.+.+.++|++++.|.++..-
T Consensus 277 ~~v~~a~~~L~---~AkrPvivvG~g~~~~~~~~~~l~~lae~l~~PV~~t~~ 326 (677)
T 1t9b_A 277 QSINKAADLIN---LAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQ 326 (677)
T ss_dssp HHHHHHHHHHH---TCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGG
T ss_pred HHHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEECCC
T ss_conf 99999999998---378988998576312057999999998873987897633
No 180
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=20.42 E-value=33 Score=14.48 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHCCCCCEEEEECCC----CCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEE-ECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 211359579994388----7712321234339814540367767001152032-157726899999999999999999
Q gi|254780779|r 154 DMGGLPDLMFVVDTN----REKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIP-GNDDSSRSIALFCDLVASAAIDGI 226 (278)
Q Consensus 154 ~m~~lP~~iiv~d~~----~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP-~NDds~~si~l~~~~i~~ai~~g~ 226 (278)
.+...|+++++.... .......-+...++|+++..|... ...+- +..-+...+.-....++..++.|.
T Consensus 189 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~v-----~~G~l~~~~~~~~~~G~~aa~~a~~iL~G~ 261 (302)
T 2qh8_A 189 AIAEKSDVIYALIDNTVASAIEGMIVAANQAKTPVFGAATSYV-----ERGAIASLGFDYYQIGVQTADYVAAILEGK 261 (302)
T ss_dssp HHGGGCSEEEECSCHHHHTTHHHHHHHHHHTTCCEEESSHHHH-----HTTCSEEEECCHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-----CCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 4546650899943423553689999987216986884010000-----357067762499999999999999997769
Done!