HHSEARCH alignment of GI: 254780779 and SCOP domain: d1nria_

Alignment
>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus influenzae [TaxId: 727]}
Probab=94.04  E-value=0.17  Score=27.69  Aligned_cols=156  Identities=12%  Similarity=0.280  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999986107881699607823579999998633983142334587323-4266655567789988763
Q gi|254780779|r   45 LSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMT-NWKTVSQSIQKLRDLEELL  123 (278)
Q Consensus        45 L~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LT-N~~ti~~si~~l~~l~~~~  123 (278)
                      +.+.+..+..|...+.+...+||+|.|+|.--.+...+...++-...|......+.|..- .+..+..++.-        
T Consensus        39 v~~~l~~I~~av~~i~~~l~~gGrl~y~G~GtSgrla~~dA~E~~ptf~~~~~~v~~~iagg~~al~~~~e~--------  110 (248)
T d1nria_          39 IESCLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEG--------  110 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTT--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHEEEEECCCHHHHHHHHHH--------
T ss_conf             999799999999999999863985999826853028998998707756888034011001581888743641--------


Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHC
Q ss_conf             01212677467887665567776434433221135957999438877----123212343398145403677670--011
Q gi|254780779|r  124 NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLV  197 (278)
Q Consensus       124 ~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~i  197 (278)
                        ..+.+..     ..++...+     ++    .-=|++|.+-...+    .-|+++|++.|.++|+|+.....+  ...
T Consensus       111 --~ed~~~~-----~~~~l~~~-----~~----~~~DvvIgISaSG~Tp~vl~al~~Ak~~Ga~ti~i~~n~~s~l~~~a  174 (248)
T d1nria_         111 --AEDNTKA-----VLNDLQSI-----HF----SKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIA  174 (248)
T ss_dssp             --GGGCTTH-----HHHHHHHT-----TC----CTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHS
T ss_pred             --CCCCHHH-----HHHHHHHC-----CC----CCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHCCCCC
T ss_conf             --1565799-----99899864-----88----82317999825988633489999987628650798627830103233


Q ss_pred             CCEEEECC--C---------CHHHHHHHHHHHHHHHHH
Q ss_conf             52032157--7---------268999999999999999
Q gi|254780779|r  198 DYVIPGND--D---------SSRSIALFCDLVASAAID  224 (278)
Q Consensus       198 dypIP~ND--d---------s~~si~l~~~~i~~ai~~  224 (278)
                      |++|..+-  .         +--+-.++++.|+..+--
T Consensus       175 d~~I~~~~GpEv~~gstr~kagtaqK~iLn~isT~~mi  212 (248)
T d1nria_         175 DIAIETIVGPEILTGSSRLKSGTAQKMVLNMLTTASMI  212 (248)
T ss_dssp             SEEEECCCCSCSSTTCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             40366346737763343234668999999999999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein HI0754
species: Haemophilus influenzae [TaxId: 727]