HHSEARCH alignment of GI: 254780779 and SCOP domain: d1vi6a_

Alignment
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=100.00  E-value=0  Score=453.34  Aligned_cols=175  Identities=26%  Similarity=0.350  Sum_probs=165.8

Q ss_pred             CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf             245899986088607547765788562102001-8816753899999999999999986107881699607823579999
Q gi|254780779|r    5 QFTIRQLLESGVQFGHRNFLWNPKMERYIFCER-NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVM   83 (278)
Q Consensus         5 ~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~r-ngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~   83 (278)
                      -|++++||+||+||||++++||  |+|||||.| ||+|||||++|+++|++|++|++.+  ++|+|||||||++++.+|+
T Consensus         5 lv~i~~ll~agvH~G~~~~~~~--M~~YIy~~r~ngi~IIdL~kT~~~L~~A~~~l~~~--~~~~ILfVgtk~~~~~~v~   80 (193)
T d1vi6a_           5 LVPPDDYLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY--EPSKILLVAARQYAHKPVQ   80 (193)
T ss_dssp             SSCHHHHHHHTTTBCCSCCCTT--TGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS--CGGGEEEEECSGGGHHHHH
T ss_pred             EEEHHHHHHHCEEECCCCCCCC--CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHH
T ss_conf             3359999972914587858887--71535140689868966999999999999999774--2675277622621678999


Q ss_pred             HHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             99863398314233458732342666555677899887630121267746788766556777643443322113595799
Q gi|254780779|r   84 EAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMF  163 (278)
Q Consensus        84 ~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ii  163 (278)
                      ++|++||+|||++||+|||||||.+.                                             +.+.|+++|
T Consensus        81 ~~A~~~g~~~v~~RWlgG~LTN~~~~---------------------------------------------~~~~P~~li  115 (193)
T d1vi6a_          81 MFSKVVGSDYIVGRFIPGTLTNPMLS---------------------------------------------EYREPEVVF  115 (193)
T ss_dssp             HHHHHHCCEEEESSCCTTTTTCTTST---------------------------------------------TCCCCSEEE
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHH---------------------------------------------HCCCCEEEE
T ss_conf             99986399854453457743316775---------------------------------------------205551899


Q ss_pred             EECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             94388771232123433981454036776700115203215772689999999999999999997
Q gi|254780779|r  164 VVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIAR  228 (278)
Q Consensus       164 v~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~  228 (278)
                      |+||..|++||+||.++||||||+|||||||+.|||||||||||++||+|++++|+++|++|++.
T Consensus       116 v~dp~~d~~ai~Ea~~l~IPvI~ivDTn~~p~~vdy~IP~Ndds~~Si~li~~~l~~ai~~~k~~  180 (193)
T d1vi6a_         116 VNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQ  180 (193)
T ss_dssp             ESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             97686107899999873897266731679985244688688873879999999999999998188


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]