HHSEARCH alignment of GI: 254780779 and SCOP domain: d2uubb1

Alignment
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=596.02  Aligned_cols=224  Identities=46%  Similarity=0.792  Sum_probs=217.0

Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf             89998608860754776578856210200188167538999999999999999861078816996078235799999986
Q gi|254780779|r    8 IRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAK   87 (278)
Q Consensus         8 ~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~   87 (278)
                      +++||+|||||||++++|||+|+|||||.|||+|||||++|+.+|++|++|++.++++||+|||||||++++++|+++|+
T Consensus         1 I~~ll~ag~H~Gh~~~~wnpkm~~yIyg~rngihIIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~i~~~A~   80 (234)
T d2uubb1           1 VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAE   80 (234)
T ss_dssp             CCCSSCTTSTTBCCCSCCCGGGGGGEEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCCEEEECCSSSSHHHHHHHHH
T ss_pred             CHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             96688678866677674798874500156199389869999999999999999987237823677266877899999999


Q ss_pred             HCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             339831423345873234266655567789988763-0121267746788766556777643443322113595799943
Q gi|254780779|r   88 RSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELL-NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVD  166 (278)
Q Consensus        88 ~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~-~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d  166 (278)
                      +||+||||+||+|||||||+||++|+++|++++.+. ++.++.+||||++.+.|++.||+++|||+++|+++||+|||+|
T Consensus        81 ~~~~~yv~~RWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~tkke~~~~~~~~~kl~k~~~Gi~~m~~~Pd~viv~d  160 (234)
T d2uubb1          81 RAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVD  160 (234)
T ss_dssp             SSSCCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHHSSTTGGGSCHHHHTHHHHHHHHHHHHSTTGGGCSSCCSEEEESC
T ss_pred             HHCCEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEC
T ss_conf             94998744435077223440000233206999987604752236558899888999999986222000110331688705


Q ss_pred             CCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88771232123433981454036776700115203215772689999999999999999997443
Q gi|254780779|r  167 TNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHS  231 (278)
Q Consensus       167 ~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~  231 (278)
                      |..|++||+||.+|||||||||||||||+.|||||||||||++||+||++.+++||++|++....
T Consensus       161 ~~~~~~Ai~Ea~~l~IPvIaivDTn~dp~~vdypIP~NDds~~sI~li~~~l~~ai~~gk~~~~~  225 (234)
T d2uubb1         161 PTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVE  225 (234)
T ss_dssp             TTTTHHHHHHHHHHTCCEEEEECTTSCGGGCSEEEESCSSCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             77428899988860987789963378966786787788865999999999999999998336676


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Thermus thermophilus [TaxId: 274]