Query gi|254780779|ref|YP_003065192.1| 30S ribosomal protein S2 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 278
No_of_seqs 150 out of 1435
Neff 5.3
Searched_HMMs 13730
Date Wed Jun 1 06:27:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780779.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uubb1 c.23.15.1 (B:7-240) Ri 100.0 0 0 596.0 16.7 224 8-231 1-225 (234)
2 d2gy9b1 c.23.15.1 (B:8-225) Ri 100.0 0 0 575.6 19.6 217 11-227 1-218 (218)
3 d1vi6a_ c.23.15.1 (A:) Ribosom 100.0 0 0 453.3 16.5 175 5-228 5-180 (193)
4 d1x94a_ c.80.1.3 (A:) Phosphoh 97.1 0.0017 1.3E-07 40.5 8.9 150 46-222 24-186 (191)
5 d1tk9a_ c.80.1.3 (A:) Phosphoh 96.7 0.023 1.7E-06 33.3 13.7 150 48-222 24-184 (188)
6 d1x92a_ c.80.1.3 (A:) Phosphoh 96.7 0.018 1.3E-06 34.0 11.0 149 50-223 26-188 (194)
7 d1nria_ c.80.1.3 (A:) Hypothet 94.0 0.17 1.2E-05 27.7 8.1 156 45-224 39-212 (248)
8 d1m3sa_ c.80.1.3 (A:) Hypothet 93.0 0.31 2.2E-05 26.1 9.7 44 159-202 80-129 (186)
9 d1ir6a_ c.107.1.2 (A:) Exonucl 92.2 0.39 2.9E-05 25.3 10.3 95 50-187 8-110 (385)
10 d1o6ca_ c.87.1.3 (A:) UDP-N-ac 89.5 0.69 5E-05 23.8 6.9 28 170-197 283-310 (377)
11 d1f0ka_ c.87.1.2 (A:) Peptidog 84.8 1.3 9.3E-05 22.0 7.5 16 172-187 259-274 (351)
12 d1jeoa_ c.80.1.3 (A:) Probable 79.2 2 0.00015 20.7 8.9 45 159-203 80-129 (177)
13 d1vima_ c.80.1.3 (A:) Hypothet 77.0 2.4 0.00017 20.3 13.8 45 159-203 83-133 (192)
14 d1l7ba_ c.15.1.2 (A:) NAD+-dep 71.1 2.5 0.00018 20.2 4.1 29 157-187 43-71 (92)
15 d1p3da1 c.5.1.1 (A:11-106) UDP 67.9 1.9 0.00014 21.0 2.9 89 64-185 6-95 (96)
16 d2jfga1 c.5.1.1 (A:1-93) UDP-N 67.6 3.9 0.00028 18.9 5.8 28 159-186 65-93 (93)
17 d1v4va_ c.87.1.3 (A:) UDP-N-ac 66.4 3.6 0.00026 19.1 4.1 29 169-197 278-306 (373)
18 d1f6da_ c.87.1.3 (A:) UDP-N-ac 65.5 3.6 0.00026 19.2 4.0 38 170-207 290-329 (376)
19 d1ovma1 c.31.1.3 (A:181-341) I 63.5 4.6 0.00034 18.4 9.0 125 51-205 14-142 (161)
20 d1a9xb2 c.23.16.1 (B:1653-1880 55.7 4.5 0.00033 18.5 3.1 30 159-188 81-117 (228)
21 d1j6ua1 c.5.1.1 (A:0-88) UDP-N 55.5 4.6 0.00033 18.5 3.1 87 67-186 2-89 (89)
22 d2dria_ c.93.1.1 (A:) D-ribose 51.8 7.2 0.00053 17.2 3.8 34 157-190 181-217 (271)
23 d2gv8a2 c.3.1.5 (A:181-287) Fl 51.0 6.3 0.00046 17.6 3.2 35 63-97 29-63 (107)
24 d8abpa_ c.93.1.1 (A:) L-arabin 49.4 7.9 0.00057 16.9 6.3 27 69-95 60-86 (305)
25 d2clyc1 f.45.1.1 (C:5-70) ATPa 49.4 7.3 0.00053 17.1 3.3 50 113-163 9-60 (66)
26 d2f9ya1 c.14.1.4 (A:4-319) Ace 48.5 2.9 0.00021 19.8 1.1 20 173-192 143-162 (316)
27 d1n2za_ c.92.2.2 (A:) Vitamin 41.4 10 0.00076 16.2 3.2 18 159-176 188-205 (245)
28 d1im5a_ c.33.1.3 (A:) Pyrazina 39.8 11 0.0008 16.0 3.2 36 159-194 119-157 (179)
29 d1c4ka1 c.23.1.4 (A:1-107) Orn 39.7 6.6 0.00048 17.4 1.9 61 160-223 34-100 (107)
30 d1guda_ c.93.1.1 (A:) D-allose 39.3 11 0.00082 16.0 4.8 42 158-199 193-235 (288)
31 d2nzug1 c.93.1.1 (G:58-332) Gl 36.9 12 0.00089 15.7 6.3 62 157-218 181-252 (275)
32 d2e1za1 c.55.1.2 (A:4-192) Pro 36.3 7.4 0.00054 17.1 1.6 32 172-203 121-158 (189)
33 d2etva1 c.92.2.4 (A:25-358) Pu 36.3 11 0.00078 16.1 2.5 14 82-95 98-111 (334)
34 d1kzyc2 c.15.1.4 (C:1867-1972) 36.0 13 0.00092 15.6 6.0 74 65-187 4-78 (106)
35 d1pixa3 c.14.1.4 (A:288-586) G 35.6 7.6 0.00055 17.0 1.6 10 179-188 154-163 (299)
36 d1b74a1 c.78.2.1 (A:1-105) Glu 35.4 3.3 0.00024 19.3 -0.2 34 157-190 61-95 (105)
37 d1pixa2 c.14.1.4 (A:1-287) Glu 33.9 14 0.001 15.4 4.4 63 149-211 95-170 (287)
38 d3d03a1 d.159.1.11 (A:1-271) G 33.7 14 0.001 15.4 5.2 26 48-73 24-49 (271)
39 d2ihta1 c.31.1.3 (A:198-374) C 32.5 14 0.001 15.3 5.9 46 49-97 6-54 (177)
40 d2bfwa1 c.87.1.8 (A:218-413) G 32.2 15 0.0011 15.2 9.3 39 159-198 112-151 (196)
41 d1muga_ c.18.1.2 (A:) G:T/U mi 31.8 5.1 0.00037 18.2 0.2 30 60-95 3-32 (165)
42 d1wdia_ e.53.1.1 (A:) Queuosin 31.4 15 0.0011 15.1 3.0 48 64-113 247-307 (344)
43 d2a2la1 d.110.9.1 (A:4-145) Dh 30.6 9.7 0.00071 16.4 1.5 48 172-222 21-69 (142)
44 d1tjya_ c.93.1.1 (A:) AI-2 rec 29.9 16 0.0012 15.0 7.2 29 159-187 190-221 (316)
45 d1pfka_ c.89.1.1 (A:) ATP-depe 29.3 16 0.0012 14.9 5.0 53 159-212 95-148 (320)
46 d1on3a2 c.14.1.4 (A:261-524) M 28.3 9.2 0.00067 16.5 1.0 18 173-190 94-111 (264)
47 d1c8ba_ c.56.1.2 (A:) Germinat 28.0 8.2 0.0006 16.8 0.8 53 158-219 186-264 (371)
48 d1xnya2 c.14.1.4 (A:268-530) P 27.7 9.8 0.00072 16.3 1.1 18 173-190 92-109 (263)
49 d1jyea_ c.93.1.1 (A:) Lac-repr 27.5 17 0.0013 14.7 6.7 27 157-183 176-202 (271)
50 d1g99a1 c.55.1.2 (A:1-197) Ace 27.4 12 0.00087 15.8 1.5 33 172-204 129-167 (197)
51 d1vjta1 c.2.1.5 (A:-1-191) Put 27.2 18 0.0013 14.7 2.4 33 157-190 151-185 (193)
52 d1pg5a1 c.78.1.1 (A:1-146) Asp 26.8 18 0.0013 14.6 7.5 42 152-195 88-131 (146)
53 d2a7sa2 c.14.1.4 (A:278-548) P 26.0 11 0.0008 16.0 1.1 21 172-192 96-116 (271)
54 d1gpma2 c.23.16.1 (A:3-207) GM 25.9 19 0.0014 14.5 7.1 30 159-188 49-84 (205)
55 d1gdha2 c.23.12.1 (A:2-100,A:2 25.8 19 0.0014 14.5 2.5 52 161-225 70-121 (129)
56 d1ldda_ a.4.5.34 (A:) Anaphase 25.8 14 0.0011 15.2 1.7 42 98-141 12-56 (74)
57 d2ji7a1 c.31.1.3 (A:195-369) O 25.4 19 0.0014 14.5 8.4 52 50-104 7-61 (175)
58 d1vrga2 c.14.1.4 (A:252-515) P 25.0 12 0.00086 15.8 1.1 14 177-190 98-111 (264)
59 d1p8aa_ c.44.1.1 (A:) Tyrosine 24.5 9.9 0.00072 16.3 0.6 20 63-82 1-20 (146)
60 d2ez9a1 c.31.1.3 (A:183-365) P 23.8 20 0.0015 14.3 9.3 118 51-204 19-143 (183)
61 d1jl3a_ c.44.1.1 (A:) Arsenate 23.8 20 0.0015 14.3 2.6 21 66-86 1-21 (137)
62 d2djia1 c.31.1.3 (A:187-363) P 23.7 21 0.0015 14.3 9.3 118 51-204 10-134 (177)
63 d1m1na_ c.92.2.3 (A:) Nitrogen 23.6 21 0.0015 14.3 6.2 53 50-103 126-184 (477)
64 d1mrza2 c.26.1.3 (A:2-158) FMN 23.3 6.4 0.00047 17.5 -0.5 13 175-187 112-124 (157)
65 d1saza1 c.55.1.2 (A:1-172) but 23.2 19 0.0014 14.5 1.9 32 172-204 112-147 (172)
66 d1josa_ d.52.7.1 (A:) Ribosome 22.5 22 0.0016 14.1 3.4 34 138-171 65-98 (100)
67 d1y81a1 c.2.1.8 (A:6-121) Hypo 22.1 18 0.0013 14.6 1.6 38 150-187 48-86 (116)
68 d1q7ra_ c.23.16.1 (A:) Hypothe 21.0 19 0.0014 14.5 1.5 14 208-221 182-195 (202)
69 d1ygya2 c.23.12.1 (A:3-98,A:28 20.3 24 0.0017 13.8 3.3 31 157-187 61-93 (130)
No 1
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=596.02 Aligned_cols=224 Identities=46% Similarity=0.792 Sum_probs=217.0
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 89998608860754776578856210200188167538999999999999999861078816996078235799999986
Q gi|254780779|r 8 IRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAK 87 (278)
Q Consensus 8 ~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~ 87 (278)
+++||+|||||||++++|||+|+|||||.|||+|||||++|+.+|++|++|++.++++||+|||||||++++++|+++|+
T Consensus 1 I~~ll~ag~H~Gh~~~~wnpkm~~yIyg~rngihIIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~i~~~A~ 80 (234)
T d2uubb1 1 VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAE 80 (234)
T ss_dssp CCCSSCTTSTTBCCCSCCCGGGGGGEEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCCEEEECCSSSSHHHHHHHHH
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 96688678866677674798874500156199389869999999999999999987237823677266877899999999
Q ss_pred HCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 339831423345873234266655567789988763-0121267746788766556777643443322113595799943
Q gi|254780779|r 88 RSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELL-NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVD 166 (278)
Q Consensus 88 ~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~-~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d 166 (278)
+||+||||+||+|||||||+||++|+++|++++.+. ++.++.+||||++.+.|++.||+++|||+++|+++||+|||+|
T Consensus 81 ~~~~~yv~~RWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~tkke~~~~~~~~~kl~k~~~Gi~~m~~~Pd~viv~d 160 (234)
T d2uubb1 81 RAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVD 160 (234)
T ss_dssp SSSCCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHHSSTTGGGSCHHHHTHHHHHHHHHHHHSTTGGGCSSCCSEEEESC
T ss_pred HHCCEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEC
T ss_conf 94998744435077223440000233206999987604752236558899888999999986222000110331688705
Q ss_pred CCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88771232123433981454036776700115203215772689999999999999999997443
Q gi|254780779|r 167 TNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHS 231 (278)
Q Consensus 167 ~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~~~~ 231 (278)
|..|++||+||.+|||||||||||||||+.|||||||||||++||+||++.+++||++|++....
T Consensus 161 ~~~~~~Ai~Ea~~l~IPvIaivDTn~dp~~vdypIP~NDds~~sI~li~~~l~~ai~~gk~~~~~ 225 (234)
T d2uubb1 161 PTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVE 225 (234)
T ss_dssp TTTTHHHHHHHHHHTCCEEEEECTTSCGGGCSEEEESCSSCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 77428899988860987789963378966786787788865999999999999999998336676
No 2
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=575.64 Aligned_cols=217 Identities=51% Similarity=0.872 Sum_probs=212.8
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 98608860754776578856210200188167538999999999999999861078816996078235799999986339
Q gi|254780779|r 11 LLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSA 90 (278)
Q Consensus 11 Ll~ag~H~Gh~~~~wnPkM~~yI~g~rngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~ 90 (278)
||+|||||||++++|||+|+|||||.|||+|||||++|+.+|++|++|+++++.+||+||||||++|++++|+++|++|+
T Consensus 1 ll~ag~H~Gh~~~~wnp~m~~yIyg~r~gi~IIdL~~T~~~L~~A~~~l~~~~~~~g~iLfVgTk~~~~~~i~~~a~~~~ 80 (218)
T d2gy9b1 1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCD 80 (218)
T ss_dssp SCCTTSSSCCCSSCCCGGGGGGBCCCBTTBCCBCHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSTTSHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 97655025766674698751400046499689829999999999999998864089869998356334499999998619
Q ss_pred CEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 83142334587323426665556778998876-30121267746788766556777643443322113595799943887
Q gi|254780779|r 91 QYCVNSKWLGGMMTNWKTVSQSIQKLRDLEEL-LNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNR 169 (278)
Q Consensus 91 ~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~-~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~ 169 (278)
+||||+||+|||||||+||++|+++|+.++.+ ..+.++.+||||.+.+.|++.||+++||||++|.++||+|||+|+..
T Consensus 81 ~~yvn~rWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~~~~~~Kke~~~~~~~~~kl~~~~~Gi~~m~~lPd~vii~d~~~ 160 (218)
T d2gy9b1 81 QFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADH 160 (218)
T ss_dssp CEEECSCCCTTTTTTHHHHHHHHHHHHHHHHHHSSTTSSSSCHHHHHHHHHHHHHHHHHSSSGGGCCCCCCEEEESCTTT
T ss_pred CCEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCC
T ss_conf 82303246568134443423477889998877514752456248899989999999986068567777871456416641
Q ss_pred CCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7123212343398145403677670011520321577268999999999999999999
Q gi|254780779|r 170 EKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIA 227 (278)
Q Consensus 170 e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~ 227 (278)
|++||+||.++||||||||||||||+.|||||||||||++||+||++.+++||++|+.
T Consensus 161 ~~~ai~Ea~~l~IP~I~ivDTn~dp~~idypIP~Ndds~~sI~li~~~l~~ai~~G~~ 218 (218)
T d2gy9b1 161 EHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRS 218 (218)
T ss_dssp THHHHHHHHHTTCCEEECCCSSSCGGGCTEECCSCSSCHHHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1899999987599779996479997657666536886799999999999999996459
No 3
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=100.00 E-value=0 Score=453.34 Aligned_cols=175 Identities=26% Similarity=0.350 Sum_probs=165.8
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 245899986088607547765788562102001-8816753899999999999999986107881699607823579999
Q gi|254780779|r 5 QFTIRQLLESGVQFGHRNFLWNPKMERYIFCER-NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVM 83 (278)
Q Consensus 5 ~~t~~~Ll~ag~H~Gh~~~~wnPkM~~yI~g~r-ngihIIdL~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~ 83 (278)
-|++++||+||+||||++++|| |+|||||.| ||+|||||++|+++|++|++|++.+ ++|+|||||||++++.+|+
T Consensus 5 lv~i~~ll~agvH~G~~~~~~~--M~~YIy~~r~ngi~IIdL~kT~~~L~~A~~~l~~~--~~~~ILfVgtk~~~~~~v~ 80 (193)
T d1vi6a_ 5 LVPPDDYLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY--EPSKILLVAARQYAHKPVQ 80 (193)
T ss_dssp SSCHHHHHHHTTTBCCSCCCTT--TGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS--CGGGEEEEECSGGGHHHHH
T ss_pred EEEHHHHHHHCEEECCCCCCCC--CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHH
T ss_conf 3359999972914587858887--71535140689868966999999999999999774--2675277622621678999
Q ss_pred HHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99863398314233458732342666555677899887630121267746788766556777643443322113595799
Q gi|254780779|r 84 EAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMF 163 (278)
Q Consensus 84 ~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ii 163 (278)
++|++||+|||++||+|||||||.+. +.+.|+++|
T Consensus 81 ~~A~~~g~~~v~~RWlgG~LTN~~~~---------------------------------------------~~~~P~~li 115 (193)
T d1vi6a_ 81 MFSKVVGSDYIVGRFIPGTLTNPMLS---------------------------------------------EYREPEVVF 115 (193)
T ss_dssp HHHHHHCCEEEESSCCTTTTTCTTST---------------------------------------------TCCCCSEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHH---------------------------------------------HCCCCEEEE
T ss_conf 99986399854453457743316775---------------------------------------------205551899
Q ss_pred EECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 94388771232123433981454036776700115203215772689999999999999999997
Q gi|254780779|r 164 VVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIAR 228 (278)
Q Consensus 164 v~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g~~~ 228 (278)
|+||..|++||+||.++||||||+|||||||+.|||||||||||++||+|++++|+++|++|++.
T Consensus 116 v~dp~~d~~ai~Ea~~l~IPvI~ivDTn~~p~~vdy~IP~Ndds~~Si~li~~~l~~ai~~~k~~ 180 (193)
T d1vi6a_ 116 VNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQ 180 (193)
T ss_dssp ESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 97686107899999873897266731679985244688688873879999999999999998188
No 4
>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]}
Probab=97.13 E-value=0.0017 Score=40.54 Aligned_cols=150 Identities=15% Similarity=0.249 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCC-CCCC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999986107881699607823579999998633983142334-5873-234266655567789988763
Q gi|254780779|r 46 SQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKW-LGGM-MTNWKTVSQSIQKLRDLEELL 123 (278)
Q Consensus 46 ~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RW-lGG~-LTN~~ti~~si~~l~~l~~~~ 123 (278)
+.....+.+|.+.+.+...++|+|+|.|....+...-. ++......+-..|. ++.. ++|-..+. .+..
T Consensus 24 ~~~~~~I~~aa~~i~~~~~~~~kI~~~G~GgSa~~A~h-~a~~~~~~~~~~~~~~~~~~~~~~~~~t-a~~n-------- 93 (191)
T d1x94a_ 24 DHNIAQIEAAAKLIADSFKQGGKVLSCGNGGSHCDAMH-FAEELTGRYRENRPGYPGIAISDPSHLS-CVSN-------- 93 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCEEEECSSSHHHHHHH-HHHHHHHHHCTTCSSCSEEEC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHH-HHHHCCCCCCCCCCCCCEECCCCHHHHH-HHHC--------
T ss_conf 54099999999999999986997999838987520757-8676025644223421011143166777-7650--------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHC
Q ss_conf 012126774678876655677764344332211359579994388771----23212343398145403677670--011
Q gi|254780779|r 124 NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLV 197 (278)
Q Consensus 124 ~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~i 197 (278)
+.+++.. +.++ ++.+.+--|++|++....+. .|++.|++.|++||+|+..+.++ ...
T Consensus 94 d~~~~~~-------~~~~----------l~~~~~~gDvli~iS~SG~s~~ii~a~~~Ak~~g~~~i~it~~~~~~l~~~~ 156 (191)
T d1x94a_ 94 DFGYDYV-------FSRY----------VEAVGAKGDVLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGKDGGKMAGLA 156 (191)
T ss_dssp ----CCH-------HHHH----------HHHHCCTTCEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTTS
T ss_pred CCCHHHH-------HHHH----------HHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 3660778-------8889----------9982899898999836875420012279998579769999568998423438
Q ss_pred CCEEEEC--CCCHH---HHHHHHHHHHHHH
Q ss_conf 5203215--77268---9999999999999
Q gi|254780779|r 198 DYVIPGN--DDSSR---SIALFCDLVASAA 222 (278)
Q Consensus 198 dypIP~N--Dds~~---si~l~~~~i~~ai 222 (278)
|+.|..+ +.+.+ ..-+++..+++.|
T Consensus 157 D~~I~vps~~~~~~iee~h~~i~h~l~~~i 186 (191)
T d1x94a_ 157 DVEIRVPHFGYADRIQEVHIKIIHIIIQLI 186 (191)
T ss_dssp SEEEEESCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 889996999951899999999999999999
No 5
>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]}
Probab=96.70 E-value=0.023 Score=33.32 Aligned_cols=150 Identities=19% Similarity=0.257 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999861078816996078235799999986339831423345873-234266655567789988763012
Q gi|254780779|r 48 TVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGM-MTNWKTVSQSIQKLRDLEELLNKE 126 (278)
Q Consensus 48 T~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~-LTN~~ti~~si~~l~~l~~~~~~~ 126 (278)
....+..+.+.+.+...+||+|+++|..-.+.....-.++-.+.+-...+=+++. |+.-..+...+.. +.+
T Consensus 24 ~~~~I~~~~~~i~~~l~~ggkI~~~GnGgSa~~A~h~a~el~~~~~~~r~~l~~i~l~~~~a~~ta~~n--------d~~ 95 (188)
T d1tk9a_ 24 LKGQIAKVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGN--------DYG 95 (188)
T ss_dssp GHHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHH--------HTC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCC
T ss_conf 199999999999999985998999878875223647777625876555444334257786122323235--------467
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHCCCE
Q ss_conf 126774678876655677764344332211359579994388771----23212343398145403677670--011520
Q gi|254780779|r 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLVDYV 200 (278)
Q Consensus 127 ~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~idyp 200 (278)
++. .+.|+. +...+--|+++++....++ .|++.|++.|+++|+++-.+.++ ...|+.
T Consensus 96 ~e~-------~f~~ql----------~~~~~~gDili~iS~SG~S~nii~a~~~Ak~~g~~ti~ltg~~~~~l~~~~D~~ 158 (188)
T d1tk9a_ 96 FEF-------VFSRQV----------EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHN 158 (188)
T ss_dssp GGG-------HHHHHH----------HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEE
T ss_pred HHH-------HHHHHH----------HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHCCEE
T ss_conf 799-------999999----------983688847999537988812688889998511538998079973568758998
Q ss_pred EEECCCCHHHHH----HHHHHHHHHH
Q ss_conf 321577268999----9999999999
Q gi|254780779|r 201 IPGNDDSSRSIA----LFCDLVASAA 222 (278)
Q Consensus 201 IP~NDds~~si~----l~~~~i~~ai 222 (278)
|-.+.+...-|+ +++..+++.|
T Consensus 159 i~i~s~~~~~iee~hl~i~H~l~~~i 184 (188)
T d1tk9a_ 159 LVVPSDDTARIQEMHILIIHTLCQII 184 (188)
T ss_dssp EEESCSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99799984899999999999999999
No 6
>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=96.68 E-value=0.018 Score=34.04 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999986107881699607823579999998633983142334587-323426665556778998876301212
Q gi|254780779|r 50 PMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGG-MMTNWKTVSQSIQKLRDLEELLNKENQ 128 (278)
Q Consensus 50 ~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG-~LTN~~ti~~si~~l~~l~~~~~~~~~ 128 (278)
..+.+|...+.+...+||+|+|.|..-.++..-.-.+.-.+.+.....=++. .|+.-..+-..+. -+-+++
T Consensus 26 ~~i~~a~~~i~~~~~~~~kif~~GnGgSas~A~h~a~dl~~~~~~~r~~~~~i~l~~~~s~~ta~~--------Nd~g~~ 97 (194)
T d1x92a_ 26 PYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIA--------NDYSYN 97 (194)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHH--------HHTCGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHC--------CCCCHH
T ss_conf 999999999999998599799987876278888888776420213443331222034246777640--------556799
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC-------HHC
Q ss_conf 6774678876655677764344332211359579994388771----23212343398145403677670-------011
Q gi|254780779|r 129 GFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP-------DLV 197 (278)
Q Consensus 129 ~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp-------~~i 197 (278)
.. +.|+ ++.+.+.-|+++++.+..++ .|++-|++.|+.+|+++-.+.+. ..+
T Consensus 98 ~~-------f~~q----------l~~~~~~gDvli~iS~SG~S~nvi~a~~~Ak~~g~~~i~ltG~~gg~~~~l~~~~Di 160 (194)
T d1x92a_ 98 EV-------FSKQ----------IRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDV 160 (194)
T ss_dssp GT-------THHH----------HHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCE
T ss_pred HH-------HHHH----------HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCCCCE
T ss_conf 99-------9999----------998568995899996688851357999998753846999982588307662467888
Q ss_pred CCEEEECCCC-HHHHH-HHHHHHHHHHH
Q ss_conf 5203215772-68999-99999999999
Q gi|254780779|r 198 DYVIPGNDDS-SRSIA-LFCDLVASAAI 223 (278)
Q Consensus 198 dypIP~NDds-~~si~-l~~~~i~~ai~ 223 (278)
.+.||.++-+ +..+. +++..+++.|.
T Consensus 161 ~i~ips~~~~~vee~hl~i~H~l~~~ie 188 (194)
T d1x92a_ 161 EIRVPSKITARIQEVHLLAIHCLCDLID 188 (194)
T ss_dssp EEECSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9995899729999999999999999999
No 7
>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus influenzae [TaxId: 727]}
Probab=94.04 E-value=0.17 Score=27.69 Aligned_cols=156 Identities=12% Similarity=0.280 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999986107881699607823579999998633983142334587323-4266655567789988763
Q gi|254780779|r 45 LSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMT-NWKTVSQSIQKLRDLEELL 123 (278)
Q Consensus 45 L~kT~~~L~~A~~~i~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LT-N~~ti~~si~~l~~l~~~~ 123 (278)
+.+.+..+..|...+.+...+||+|.|+|.--.+...+...++-...|......+.|..- .+..+..++.-
T Consensus 39 v~~~l~~I~~av~~i~~~l~~gGrl~y~G~GtSgrla~~dA~E~~ptf~~~~~~v~~~iagg~~al~~~~e~-------- 110 (248)
T d1nria_ 39 IESCLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEG-------- 110 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHEEEEECCCHHHHHHHHHH--------
T ss_conf 999799999999999999863985999826853028998998707756888034011001581888743641--------
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHC
Q ss_conf 01212677467887665567776434433221135957999438877----123212343398145403677670--011
Q gi|254780779|r 124 NKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLV 197 (278)
Q Consensus 124 ~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~i 197 (278)
..+.+.. ..++...+ ++ .-=|++|.+-...+ .-|+++|++.|.++|+|+.....+ ...
T Consensus 111 --~ed~~~~-----~~~~l~~~-----~~----~~~DvvIgISaSG~Tp~vl~al~~Ak~~Ga~ti~i~~n~~s~l~~~a 174 (248)
T d1nria_ 111 --AEDNTKA-----VLNDLQSI-----HF----SKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIA 174 (248)
T ss_dssp --GGGCTTH-----HHHHHHHT-----TC----CTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHS
T ss_pred --CCCCHHH-----HHHHHHHC-----CC----CCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHCCCCC
T ss_conf --1565799-----99899864-----88----82317999825988633489999987628650798627830103233
Q ss_pred CCEEEECC--C---------CHHHHHHHHHHHHHHHHH
Q ss_conf 52032157--7---------268999999999999999
Q gi|254780779|r 198 DYVIPGND--D---------SSRSIALFCDLVASAAID 224 (278)
Q Consensus 198 dypIP~ND--d---------s~~si~l~~~~i~~ai~~ 224 (278)
|++|..+- . +--+-.++++.|+..+--
T Consensus 175 d~~I~~~~GpEv~~gstr~kagtaqK~iLn~isT~~mi 212 (248)
T d1nria_ 175 DIAIETIVGPEILTGSSRLKSGTAQKMVLNMLTTASMI 212 (248)
T ss_dssp SEEEECCCCSCSSTTCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 40366346737763343234668999999999999999
No 8
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}
Probab=93.01 E-value=0.31 Score=26.05 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=32.3
Q ss_pred CCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC--HHCCCEEE
Q ss_conf 9579994388771----23212343398145403677670--01152032
Q gi|254780779|r 159 PDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP--DLVDYVIP 202 (278)
Q Consensus 159 P~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp--~~idypIP 202 (278)
-|++|++....+. .+++.|++.|+|||+|.+...+| ...||.|+
T Consensus 80 ~Dl~I~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~La~~ad~~i~ 129 (186)
T d1m3sa_ 80 GDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIR 129 (186)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCEEEE
T ss_conf 87899846741003238999999987997899955887455675888899
No 9
>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]}
Probab=92.15 E-value=0.39 Score=25.34 Aligned_cols=95 Identities=12% Similarity=0.178 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHH----HHHHHHHHHHHCCC---EECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999986107881699607823----57999999863398---3142334587323426665556778998876
Q gi|254780779|r 50 PMLQKALQVISDTVARGGRILFVATKSQ----ASDCVMEAAKRSAQ---YCVNSKWLGGMMTNWKTVSQSIQKLRDLEEL 122 (278)
Q Consensus 50 ~~L~~A~~~i~~i~~~gg~ILFVgTk~~----~~~~i~~~A~~~~~---~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~ 122 (278)
.-+++|...|.+.+.++.+|+++|-.-. +.-++..+-.+.|. +|+.+|.--|-=
T Consensus 8 ~~m~~A~~~i~~ai~~~e~I~I~gDyD~DGitS~aIl~~~L~~~g~~~~~~Ip~R~~eGyG------------------- 68 (385)
T d1ir6a_ 8 KGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYG------------------- 68 (385)
T ss_dssp TTHHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCCTTTSCSS-------------------
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-------------------
T ss_conf 5899999999999977997999927786067999999999998899759987786656998-------------------
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHCCCEEEEE
Q ss_conf 3012126774678876655677764344332211359579994388-7712321234339814540
Q gi|254780779|r 123 LNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTN-REKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 123 ~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~-~e~~Av~EA~kl~IPvIai 187 (278)
++... |..+..-++++|.+|.. ....+|.+|+..||.+|=+
T Consensus 69 -------l~~~~-----------------i~~~~~~~~LiItvD~G~~~~e~i~~~~~~gi~vIv~ 110 (385)
T d1ir6a_ 69 -------VLMER-----------------VPEHLEASDLFLTVDCGITNHAELRELLENGVEVIVT 110 (385)
T ss_dssp -------CCGGG-----------------HHHHHTTCSEEEESSCCTTCGGGHHHHTTSCCEEEEE
T ss_pred -------CCHHH-----------------HHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEECC
T ss_conf -------68999-----------------9998533776998236522036676676328723214
No 10
>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]}
Probab=89.52 E-value=0.69 Score=23.78 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=20.2
Q ss_pred CCHHHHHHHHCCCEEEEECCCCCCCHHC
Q ss_conf 7123212343398145403677670011
Q gi|254780779|r 170 EKLAIQEARRLRIPIVAVVDTNSNPDLV 197 (278)
Q Consensus 170 e~~Av~EA~kl~IPvIaivDTn~dp~~i 197 (278)
-...+.||.-+|+|+|-+-|+.--|..+
T Consensus 283 Sss~i~Ea~~lg~P~Inir~~tERqe~~ 310 (377)
T d1o6ca_ 283 SGGVQEEAPSLGKPVLVLRDTTERPEGV 310 (377)
T ss_dssp --CHHHHGGGGTCCEEEECSCCC---CT
T ss_pred CCHHHHHHHHHHCEEEEECCCCCCCCHH
T ss_conf 4046776666541489807887582200
No 11
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Probab=84.75 E-value=1.3 Score=22.04 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=9.4
Q ss_pred HHHHHHHHCCCEEEEE
Q ss_conf 2321234339814540
Q gi|254780779|r 172 LAIQEARRLRIPIVAV 187 (278)
Q Consensus 172 ~Av~EA~kl~IPvIai 187 (278)
..+.||-.+|+|+|.+
T Consensus 259 ~T~~Eal~~g~P~I~i 274 (351)
T d1f0ka_ 259 LTVSEIAAAGLPALFV 274 (351)
T ss_dssp HHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHCCCEEEE
T ss_conf 3778888717854654
No 12
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=79.19 E-value=2 Score=20.74 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=30.4
Q ss_pred CCEEEEECCCCCC----HHHHHHHHCCCEEEEECCCCCCC-HHCCCEEEE
Q ss_conf 9579994388771----23212343398145403677670-011520321
Q gi|254780779|r 159 PDLMFVVDTNREK----LAIQEARRLRIPIVAVVDTNSNP-DLVDYVIPG 203 (278)
Q Consensus 159 P~~iiv~d~~~e~----~Av~EA~kl~IPvIaivDTn~dp-~~idypIP~ 203 (278)
=|++|++....+. -+++.|++.|+|||+|...++++ ...|+.||.
T Consensus 80 ~Dl~I~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~~~~~l~~~aD~~l~~ 129 (177)
T d1jeoa_ 80 DDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGNVVEFADLTIPL 129 (177)
T ss_dssp TCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCGGGGGCSEEEEC
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCEEEE
T ss_conf 77688713330268999999999875994367736888679856836998
No 13
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=77.02 E-value=2.4 Score=20.33 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=32.5
Q ss_pred CCEEEEECCCCC----CHHHHHHHHCCCEEEEECCCCCCC--HHCCCEEEE
Q ss_conf 957999438877----123212343398145403677670--011520321
Q gi|254780779|r 159 PDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVIPG 203 (278)
Q Consensus 159 P~~iiv~d~~~e----~~Av~EA~kl~IPvIaivDTn~dp--~~idypIP~ 203 (278)
=|++|++....+ ..+++.|++.|+|||+|.+...+| ...||.+..
T Consensus 83 ~Dl~i~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~l~~~ad~~l~i 133 (192)
T d1vima_ 83 QDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVV 133 (192)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred CCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEE
T ss_conf 330002133111002588899987622441456512554444445569996
No 14
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]}
Probab=71.09 E-value=2.5 Score=20.18 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=20.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 3595799943887712321234339814540
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
+.-+.+|+-|... .-++.|.++|||||.-
T Consensus 43 ~~t~~LV~g~~~g--~K~~kA~~~gI~IisE 71 (92)
T d1l7ba_ 43 RKTSYLVVGENPG--SKLEKARALGVPTLTE 71 (92)
T ss_dssp SSCCCBEECSSSS--TTHHHHHCSSSCCEEH
T ss_pred CCEEEEEECCCCC--CHHHHHHHCCCCEECH
T ss_conf 6540899889998--3899999839918639
No 15
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=67.89 E-value=1.9 Score=20.98 Aligned_cols=89 Identities=13% Similarity=0.204 Sum_probs=49.2
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 07881699607823579999998633983142334587323426665556778998876301212677467887665567
Q gi|254780779|r 64 ARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRD 143 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~ 143 (278)
.+.++|.|+|-.--....+......-|. .|+.-=.. .| ....+ |.+.--..+.++...
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~---~~-----~~~~~---L~~~Gi~v~~g~~~~---------- 63 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIA---DG-----VVTQR---LAQAGAKIYIGHAEE---------- 63 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESC---CS-----HHHHH---HHHTTCEEEESCCGG----------
T ss_pred HHCCEEEEEEECHHHHHHHHHHHHHCCC-EEEEEECC---CC-----HHHHH---HHHCCCEEEECCCCC----------
T ss_conf 0077799998779999999999984897-79997088---78-----01268---997798577787434----------
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECC-CCCCHHHHHHHHCCCEEE
Q ss_conf 776434433221135957999438-877123212343398145
Q gi|254780779|r 144 KLKRALDGIRDMGGLPDLMFVVDT-NREKLAIQEARRLRIPIV 185 (278)
Q Consensus 144 kl~k~lgGi~~m~~lP~~iiv~d~-~~e~~Av~EA~kl~IPvI 185 (278)
++ .-+|+|++... ..++..+.+|++.|||||
T Consensus 64 ----~i-------~~~d~vV~S~AI~~~npel~~A~~~gipii 95 (96)
T d1p3da1 64 ----HI-------EGASVVVVSSAIKDDNPELVTSKQKRIPVI 95 (96)
T ss_dssp ----GG-------TTCSEEEECTTSCTTCHHHHHHHHTTCCEE
T ss_pred ----CC-------CCCCEEEECCCCCCCCHHHHHHHHCCCCEE
T ss_conf ----57-------899899988872998999999998599888
No 16
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=67.62 E-value=3.9 Score=18.94 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=21.7
Q ss_pred CCEEEEEC-CCCCCHHHHHHHHCCCEEEE
Q ss_conf 95799943-88771232123433981454
Q gi|254780779|r 159 PDLMFVVD-TNREKLAIQEARRLRIPIVA 186 (278)
Q Consensus 159 P~~iiv~d-~~~e~~Av~EA~kl~IPvIa 186 (278)
-|.+|+.- ...++..+++|.+.||||||
T Consensus 65 ~d~vi~SPGi~~~~~~~~~a~~~gi~iiG 93 (93)
T d2jfga1 65 ADLIVASPGIALAHPSLSAAADAGIEIVG 93 (93)
T ss_dssp CSEEEECTTSCTTSHHHHHHHHTTCEEEC
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCEEC
T ss_conf 87899889879999999999986997489
No 17
>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]}
Probab=66.36 E-value=3.6 Score=19.13 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHCCCEEEEECCCCCCCHHC
Q ss_conf 77123212343398145403677670011
Q gi|254780779|r 169 REKLAIQEARRLRIPIVAVVDTNSNPDLV 197 (278)
Q Consensus 169 ~e~~Av~EA~kl~IPvIaivDTn~dp~~i 197 (278)
.-...+.||--+|+|+|-+=|+..-|..+
T Consensus 278 nSssgi~Ea~~lg~P~Inir~~~eRqeg~ 306 (373)
T d1v4va_ 278 DSGGLQEEGAALGVPVVVLRNVTERPEGL 306 (373)
T ss_dssp SCHHHHHHHHHTTCCEEECSSSCSCHHHH
T ss_pred CCCHHHHCCHHHCCCEEEECCCCCCHHHH
T ss_conf 64122220032058689848876698789
No 18
>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]}
Probab=65.54 E-value=3.6 Score=19.15 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCHHHHHHHHCCCEEEEECCCCCCCHHCC--CEEEECCCC
Q ss_conf 71232123433981454036776700115--203215772
Q gi|254780779|r 170 EKLAIQEARRLRIPIVAVVDTNSNPDLVD--YVIPGNDDS 207 (278)
Q Consensus 170 e~~Av~EA~kl~IPvIaivDTn~dp~~id--ypIP~NDds 207 (278)
-+..+.||--+|+|+|-+-|..--|..++ ..|=++.|.
T Consensus 290 Sssgi~Ea~~lg~P~Inir~~ter~~~~~~g~~i~v~~~~ 329 (376)
T d1f6da_ 290 SGGIQEEAPSLGKPVLVMRDTTERPEAVTAGTVRLVGTDK 329 (376)
T ss_dssp SSGGGGTGGGGTCCEEECSSCCSCHHHHHHTSEEECCSSH
T ss_pred CCCHHHHHHHHCCCEEECCCCCCCCCCEECCEEEECCCCH
T ss_conf 8506766787489889727876576412368069878999
No 19
>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}
Probab=63.54 E-value=4.6 Score=18.44 Aligned_cols=125 Identities=9% Similarity=0.008 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHC-CCCEEEEEECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999998610-78816996078---235799999986339831423345873234266655567789988763012
Q gi|254780779|r 51 MLQKALQVISDTVA-RGGRILFVATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKE 126 (278)
Q Consensus 51 ~L~~A~~~i~~i~~-~gg~ILFVgTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~ 126 (278)
+|+.++.-+.+... ...-++++|.. ..+.+.+.+++++++.|+++...=-|.+-.-. ...-|.
T Consensus 14 ~l~a~~~~a~~~l~~AkrP~il~G~gv~~~~a~~~l~~l~e~~~iPv~tt~~gkg~i~e~~-------------p~~~G~ 80 (161)
T d1ovma1 14 CLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQ-------------AGFYGT 80 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSSCTTS-------------TTCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC-------------CCCCCC
T ss_conf 9999999999999828996899895937550699999999964965998477677660214-------------102356
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECC
Q ss_conf 1267746788766556777643443322113595799943887712321234339814540367767001152032157
Q gi|254780779|r 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGND 205 (278)
Q Consensus 127 ~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~ND 205 (278)
+.+...... ++.+-+--|+|+++++.-..... -......|-.-+++-+.||..+...++.+=
T Consensus 81 ~~G~~~~~~----------------~~~~i~~aDliL~iG~~l~~~~t-~~~~~~~~~~kiI~id~d~~~i~~~~~~~v 142 (161)
T d1ovma1 81 YSGSASTGA----------------VKEAIEGADTVLCVGTRFTDTLT-AGFTHQLTPAQTIEVQPHAARVGDVWFTGI 142 (161)
T ss_dssp CCGGGSCHH----------------HHHHHHTSSEEEEESCCCCTTTT-TTTCCCCCTTTEEEECSSEEEETTEEEESC
T ss_pred CCCCCCCHH----------------HHHHHHCCCEEEEECCCCCCCCC-CCCCCCCCCCEEEEEECCHHHHCCEEECCC
T ss_conf 677757599----------------99998538989997776453331-124546898549999489999299500696
No 20
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=55.70 E-value=4.5 Score=18.49 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=17.1
Q ss_pred CCEEEEEC----CCCCCH---HHHHHHHCCCEEEEEC
Q ss_conf 95799943----887712---3212343398145403
Q gi|254780779|r 159 PDLMFVVD----TNREKL---AIQEARRLRIPIVAVV 188 (278)
Q Consensus 159 P~~iiv~d----~~~e~~---Av~EA~kl~IPvIaiv 188 (278)
||.||+.+ |..... +++++...+||+.|||
T Consensus 81 pdgivlS~GPg~P~~~~~~~~~~~~~~~~~iPILGIC 117 (228)
T d1a9xb2 81 PDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGIC 117 (228)
T ss_dssp CSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEET
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999982887765321127899999981799889997
No 21
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=55.47 E-value=4.6 Score=18.47 Aligned_cols=87 Identities=18% Similarity=0.092 Sum_probs=46.1
Q ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 81699607823579999998633983142334587323426665556778998876301212677467887665567776
Q gi|254780779|r 67 GRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLK 146 (278)
Q Consensus 67 g~ILFVgTk~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~kl~ 146 (278)
-+|.|+|-.--....+...+...|.. |+. .=-++.. ...+ |+..--..+.++..
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~-VsG-----SD~~~~~---~t~~---L~~~Gi~i~~gh~~-------------- 55 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGND-VYG-----SNIEETE---RTAY---LRKLGIPIFVPHSA-------------- 55 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCE-EEE-----ECSSCCH---HHHH---HHHTTCCEESSCCT--------------
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCE-EEE-----EECCCCH---HHHH---HHHCCCEEEEEECC--------------
T ss_conf 68999957789999999999968996-998-----7277886---6899---99779868963110--------------
Q ss_pred HHHHHHHHHCCCCCEEEEECC-CCCCHHHHHHHHCCCEEEE
Q ss_conf 434433221135957999438-8771232123433981454
Q gi|254780779|r 147 RALDGIRDMGGLPDLMFVVDT-NREKLAIQEARRLRIPIVA 186 (278)
Q Consensus 147 k~lgGi~~m~~lP~~iiv~d~-~~e~~Av~EA~kl~IPvIa 186 (278)
.+. .-+|+||+... ..+..-+.+|+++||||..
T Consensus 56 ------~~i-~~~d~vV~SsAI~~~npel~~A~~~gIpv~~ 89 (89)
T d1j6ua1 56 ------DNW-YDPDLVIKTPAVRDDNPEIVRARMERVPIEN 89 (89)
T ss_dssp ------TSC-CCCSEEEECTTCCTTCHHHHHHHHTTCCEEE
T ss_pred ------CCC-CCCCEEEEECCCCCCCHHHHHHHHCCCCCCC
T ss_conf ------256-7997899825759989999999985998039
No 22
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=51.81 E-value=7.2 Score=17.18 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=14.1
Q ss_pred CCCCEEEEECCCCC---CHHHHHHHHCCCEEEEECCC
Q ss_conf 35957999438877---12321234339814540367
Q gi|254780779|r 157 GLPDLMFVVDTNRE---KLAIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e---~~Av~EA~kl~IPvIaivDT 190 (278)
..|+++|+.+-..= ..|++++..-.+.++|+-++
T Consensus 181 ~~~~ai~~~~d~~a~g~~~al~~~g~~di~iig~d~~ 217 (271)
T d2dria_ 181 PDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT 217 (271)
T ss_dssp TTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEEECC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 6850796156787889999999838998766777688
No 23
>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=50.97 E-value=6.3 Score=17.55 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=29.1
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 10788169960782357999999863398314233
Q gi|254780779|r 63 VARGGRILFVATKSQASDCVMEAAKRSAQYCVNSK 97 (278)
Q Consensus 63 ~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~~R 97 (278)
...|++||+||+.-.+.++....|..+...++..|
T Consensus 29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~ 63 (107)
T d2gv8a2 29 LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSL 63 (107)
T ss_dssp GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEEC
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEE
T ss_conf 15997699988898799999999975598999996
No 24
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=49.41 E-value=7.9 Score=16.94 Aligned_cols=27 Identities=4% Similarity=0.162 Sum_probs=13.9
Q ss_pred EEEEECCHHHHHHHHHHHHHCCCEECC
Q ss_conf 699607823579999998633983142
Q gi|254780779|r 69 ILFVATKSQASDCVMEAAKRSAQYCVN 95 (278)
Q Consensus 69 ILFVgTk~~~~~~i~~~A~~~~~~yV~ 95 (278)
|++..+...+...+-+.|...|.|.|.
T Consensus 60 iIi~~~~~~~~~~~~~~a~~~giPVV~ 86 (305)
T d8abpa_ 60 FVICTPDPKLGSAIVAKARGYDMKVIA 86 (305)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred EEECCCCCCCCHHHHHHHHHCCCCEEE
T ss_conf 998364333669999999965998899
No 25
>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus) [TaxId: 9913]}
Probab=49.41 E-value=7.3 Score=17.15 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=32.6
Q ss_pred HHHHHHHHHH--HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 6778998876--30121267746788766556777643443322113595799
Q gi|254780779|r 113 IQKLRDLEEL--LNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMF 163 (278)
Q Consensus 113 i~~l~~l~~~--~~~~~~~~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~ii 163 (278)
+.++++|... ..|+.-.-+-...-.+..++.||.+.+||= +|++.|..-|
T Consensus 9 ldKiREY~~Ks~~~Gg~vD~~Pe~~kel~~el~kl~~~YG~g-dm~~FP~FkF 60 (66)
T d2clyc1 9 VDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGKA-DMNTFPNFTF 60 (66)
T ss_dssp HHHHHHHHHHHTCCSSSSSCCTHHHHHHHHHHHHHHHHHCSS-CTTSCCCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CHHHCCCCCC
T ss_conf 999999997523679988898899999999999999997778-5523868788
No 26
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}
Probab=48.54 E-value=2.9 Score=19.79 Aligned_cols=20 Identities=35% Similarity=0.698 Sum_probs=16.4
Q ss_pred HHHHHHHCCCEEEEECCCCC
Q ss_conf 32123433981454036776
Q gi|254780779|r 173 AIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 173 Av~EA~kl~IPvIaivDTn~ 192 (278)
.++=|.+.|||+|.+|||-.
T Consensus 143 ~~~~a~~~~~Pii~~vDtpG 162 (316)
T d2f9ya1 143 LMQMAERFKMPIITFIDTPG 162 (316)
T ss_dssp HHHHHHHTTCCEEEEEEESC
T ss_pred HHHHHHHCCCCEEEEEECCC
T ss_conf 99999870840489874676
No 27
>d1n2za_ c.92.2.2 (A:) Vitamin B12 binding protein BtuF {Escherichia coli [TaxId: 562]}
Probab=41.43 E-value=10 Score=16.16 Aligned_cols=18 Identities=11% Similarity=0.278 Sum_probs=8.8
Q ss_pred CCEEEEECCCCCCHHHHH
Q ss_conf 957999438877123212
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQE 176 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~E 176 (278)
||+||+.+-..+...+..
T Consensus 188 PDvIi~~~~~~~~~~~~~ 205 (245)
T d1n2za_ 188 PQAIVITGGPDQIPKIKQ 205 (245)
T ss_dssp CSEEEEESCGGGHHHHHH
T ss_pred CCEEEEECCCCCHHHHHH
T ss_conf 999999589741477875
No 28
>d1im5a_ c.33.1.3 (A:) Pyrazinamidase/nicotinamidase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=39.81 E-value=11 Score=16.00 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=26.0
Q ss_pred CCEEEEECCCCCC---HHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 9579994388771---23212343398145403677670
Q gi|254780779|r 159 PDLMFVVDTNREK---LAIQEARRLRIPIVAVVDTNSNP 194 (278)
Q Consensus 159 P~~iiv~d~~~e~---~Av~EA~kl~IPvIaivDTn~dp 194 (278)
.+-|+|.+...+. ..+++|..+|.-|+-+-|.-++.
T Consensus 119 i~~liv~G~~t~~CV~~T~~~a~~~g~~V~vv~Da~~s~ 157 (179)
T d1im5a_ 119 VKRVYICGVATEYCVRATALDALKHGFEVYLLRDAVKGI 157 (179)
T ss_dssp CCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 998999873252448887999998699899966455789
No 29
>d1c4ka1 c.23.1.4 (A:1-107) Ornithine decarboxylase N-terminal "wing" domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=39.74 E-value=6.6 Score=17.43 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=43.0
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCEEEEECCCCC-CCH----HCCCEEE-ECCCCHHHHHHHHHHHHHHHH
Q ss_conf 579994388771232123433981454036776-700----1152032-157726899999999999999
Q gi|254780779|r 160 DLMFVVDTNREKLAIQEARRLRIPIVAVVDTNS-NPD----LVDYVIP-GNDDSSRSIALFCDLVASAAI 223 (278)
Q Consensus 160 ~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~-dp~----~idypIP-~NDds~~si~l~~~~i~~ai~ 223 (278)
.||++.|.....++--++..++||++-+++... .|. .|+-.|+ +|+. .+.++.+.|-.|..
T Consensus 34 aAVVvsD~~~g~l~~i~~TgF~IPvFv~~~~~~~~~~~~~~~i~gV~~l~~~~---~~~~y~rqlEaAA~ 100 (107)
T d1c4ka1 34 GAVIAMDYETDVIDAADATKFGIPVFAVTKDAQAISADELKKIFHIIDLENKF---DATVNAREIETAVN 100 (107)
T ss_dssp EEEEEETTCHHHHHHHHTTCSCCCEEEEESCSTTSCHHHHTTCCEEEECC--C---CSTTHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHCCCCCEEEECCCCC---CHHHHHHHHHHHHH
T ss_conf 89999714011899999628888889996688747944506464677314431---36688999999999
No 30
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=39.34 E-value=11 Score=15.95 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCE-EEEECCCCCCCHHCCC
Q ss_conf 59579994388771232123433981-4540367767001152
Q gi|254780779|r 158 LPDLMFVVDTNREKLAIQEARRLRIP-IVAVVDTNSNPDLVDY 199 (278)
Q Consensus 158 lP~~iiv~d~~~e~~Av~EA~kl~IP-vIaivDTn~dp~~idy 199 (278)
-|+++|..+-.--.-+++.++..|.| =+.++-.+.+|..+++
T Consensus 193 ~~~ai~~~~d~~a~g~~~al~~~g~~~di~ivg~D~~~~~~~~ 235 (288)
T d1guda_ 193 NIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKM 235 (288)
T ss_dssp TCCEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHH
T ss_pred CCCEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHH
T ss_conf 5213441487899999999997599987499955798999998
No 31
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=36.95 E-value=12 Score=15.71 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=33.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCC------CEEEEECCCCC----CCHHCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 3595799943887712321234339------81454036776----70011520321577268999999999
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLR------IPIVAVVDTNS----NPDLVDYVIPGNDDSSRSIALFCDLV 218 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~------IPvIaivDTn~----dp~~idypIP~NDds~~si~l~~~~i 218 (278)
..|+++|+.+-..=.-++..+..+| |.+||+-|+.. .|..-++-.|..+-+.+++++++..+
T Consensus 181 ~~~~ai~~~~d~~A~g~~~~l~~~g~~ip~di~vig~d~~~~~~~~~p~lttv~~~~~~~g~~av~~l~~~i 252 (275)
T d2nzug1 181 EKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYM 252 (275)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHTTTCCTTTTCEEEEEECCGGGGSSSSCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 997189846747777799987653998875404441268077884389955999399999999999999996
No 32
>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}
Probab=36.32 E-value=7.4 Score=17.14 Aligned_cols=32 Identities=38% Similarity=0.466 Sum_probs=23.1
Q ss_pred HHHHHHHHC--CCEEEEECCCC----CCCHHCCCEEEE
Q ss_conf 232123433--98145403677----670011520321
Q gi|254780779|r 172 LAIQEARRL--RIPIVAVVDTN----SNPDLVDYVIPG 203 (278)
Q Consensus 172 ~Av~EA~kl--~IPvIaivDTn----~dp~~idypIP~ 203 (278)
.+|+-|.++ ++|-|++.||- -+|.--.|+||-
T Consensus 121 ~~i~~~~~~~P~~p~va~FDTaFh~t~p~~a~~yalP~ 158 (189)
T d2e1za1 121 SGIDAARHLFPAVRQVAVFDTSFHQTLAPEAYLYGLPW 158 (189)
T ss_dssp HHHHHHHHHCTTSEEEEEETTGGGGGCCHHHHCCSSCH
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHCCCCH
T ss_conf 99999998789999799967811257878898728999
No 33
>d2etva1 c.92.2.4 (A:25-358) Putative iron(III) transporter TM0189 {Thermotoga maritima [TaxId: 2336]}
Probab=36.31 E-value=11 Score=16.10 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=7.2
Q ss_pred HHHHHHHCCCEECC
Q ss_conf 99998633983142
Q gi|254780779|r 82 VMEAAKRSAQYCVN 95 (278)
Q Consensus 82 i~~~A~~~~~~yV~ 95 (278)
.....++.|.|.+.
T Consensus 98 ~~~~l~~~gipv~~ 111 (334)
T d2etva1 98 AKDIQEKTGIPVVV 111 (334)
T ss_dssp HHHHHHHHTSCEEE
T ss_pred HHHHHHHCCCCEEE
T ss_conf 89998751897799
No 34
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.98 E-value=13 Score=15.62 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=49.6
Q ss_pred CCCEEEEEECCHH-HHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 7881699607823-579999998633983142334587323426665556778998876301212677467887665567
Q gi|254780779|r 65 RGGRILFVATKSQ-ASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERLNIERKRD 143 (278)
Q Consensus 65 ~gg~ILFVgTk~~-~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~~tkKe~~~~~r~~~ 143 (278)
+|=+||+|+.+++ +.+.......-+|.--|..-|.-+ .| ..
T Consensus 4 ~~l~vl~vs~~~~~F~e~Ws~IL~~~Ga~vV~~~~~~~--~~----------------------sd-------------- 45 (106)
T d1kzyc2 4 QNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSA--HN----------------------KD-------------- 45 (106)
T ss_dssp TTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSS--SC----------------------CC--------------
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCH--HH----------------------CC--------------
T ss_conf 66289998066401899999999967946864034650--22----------------------24--------------
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 77643443322113595799943887712321234339814540
Q gi|254780779|r 144 KLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 144 kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
... +.=| ++|+|+..-....+-|..+|||+|..
T Consensus 46 ----~~~------~~~D-VvvTD~scp~~vl~~a~~~~ipvVS~ 78 (106)
T d1kzyc2 46 ----IAL------GVFD-VVVTDPSCPASVLKCAEALQLPVVSQ 78 (106)
T ss_dssp ----SCG------GGCS-EEEECTTCCHHHHHHHHHHTCCEECH
T ss_pred ----CCC------CCCC-EEEECCCCCHHHHHHHHHCCCCEEEH
T ss_conf ----764------4365-89967989899999988719967668
No 35
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}
Probab=35.58 E-value=7.6 Score=17.05 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=4.6
Q ss_pred HCCCEEEEEC
Q ss_conf 3398145403
Q gi|254780779|r 179 RLRIPIVAVV 188 (278)
Q Consensus 179 kl~IPvIaiv 188 (278)
.+.+|.|+++
T Consensus 154 ~~~VP~isvi 163 (299)
T d1pixa3 154 TSHIPQFEIT 163 (299)
T ss_dssp TCCCCEEEEE
T ss_pred HHCCEEEEEE
T ss_conf 5032047999
No 36
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=35.36 E-value=3.3 Score=19.35 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=22.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHH-HCCCEEEEECCC
Q ss_conf 3595799943887712321234-339814540367
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEAR-RLRIPIVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~-kl~IPvIaivDT 190 (278)
+-|++++|-.=.-...|+.+-+ +.++|+||+++.
T Consensus 61 ~~~~~iViACNTaS~~al~~lr~~~~~PiiGvi~P 95 (105)
T d1b74a1 61 KGVDIIVVACNTASAYALERLKKEINVPVFGVIEP 95 (105)
T ss_dssp TTCSEEEECCHHHHHHHHHHHHHHSSSCEEESHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 49998998057178999999998789999993228
No 37
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}
Probab=33.87 E-value=14 Score=15.40 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=35.6
Q ss_pred HHHHHHHCCCCCEEEEECCCCC------------CHHHHHHHHCCCEEEEECCCCC-CCHHCCCEEEECCCCHHHH
Q ss_conf 4433221135957999438877------------1232123433981454036776-7001152032157726899
Q gi|254780779|r 149 LDGIRDMGGLPDLMFVVDTNRE------------KLAIQEARRLRIPIVAVVDTNS-NPDLVDYVIPGNDDSSRSI 211 (278)
Q Consensus 149 lgGi~~m~~lP~~iiv~d~~~e------------~~Av~EA~kl~IPvIaivDTn~-dp~~idypIP~NDds~~si 211 (278)
..|+-.+.+.|=+|+.-|.... .-++.=|.+.++|+|.++||-. .+..-+...|..+..-+.+
T Consensus 95 V~G~g~i~G~~v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~lP~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~ 170 (287)
T d1pixa2 95 VKGLGRVNGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPF 170 (287)
T ss_dssp EEEEEEETTEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGGGHHHHSSSTTSTTHHH
T ss_pred EEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCHHHHHHHH
T ss_conf 4798631561589997436345664325588999988876653479789996477666775103213124678999
No 38
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]}
Probab=33.68 E-value=14 Score=15.38 Aligned_cols=26 Identities=4% Similarity=0.035 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999999999998610788169960
Q gi|254780779|r 48 TVPMLQKALQVISDTVARGGRILFVA 73 (278)
Q Consensus 48 T~~~L~~A~~~i~~i~~~gg~ILFVg 73 (278)
+...++.++..+.....+.--|++.|
T Consensus 24 ~~~~l~~~~~~i~~~~~~~D~vv~~G 49 (271)
T d3d03a1 24 VNAANADVVSQLNALRERPDAVVVSG 49 (271)
T ss_dssp HHHHHHHHHHHHHTCSSCCSEEEEES
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 99999999999983589999999895
No 39
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=32.47 E-value=14 Score=15.25 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECC---HHHHHHHHHHHHHCCCEECCCC
Q ss_conf 999999999999861078816996078---2357999999863398314233
Q gi|254780779|r 49 VPMLQKALQVISDTVARGGRILFVATK---SQASDCVMEAAKRSAQYCVNSK 97 (278)
Q Consensus 49 ~~~L~~A~~~i~~i~~~gg~ILFVgTk---~~~~~~i~~~A~~~~~~yV~~R 97 (278)
-..+.+|...|.+ ..+-+++||.. ..+.+.+.++|+++|.|+++..
T Consensus 6 ~~~i~~a~~lL~~---AkrPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~ 54 (177)
T d2ihta1 6 QKAADQAAALLAE---AKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTY 54 (177)
T ss_dssp HHHHHHHHHHHHH---CSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECS
T ss_pred HHHHHHHHHHHHH---CCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 9999999999980---799799999682534269999997531558999605
No 40
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=32.20 E-value=15 Score=15.23 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=24.4
Q ss_pred CCEEEEECC-CCCCHHHHHHHHCCCEEEEECCCCCCCHHCC
Q ss_conf 957999438-8771232123433981454036776700115
Q gi|254780779|r 159 PDLMFVVDT-NREKLAIQEARRLRIPIVAVVDTNSNPDLVD 198 (278)
Q Consensus 159 P~~iiv~d~-~~e~~Av~EA~kl~IPvIaivDTn~dp~~id 198 (278)
=|+++.... ..-...+.||...|+|||+- |..+.++.++
T Consensus 112 ~di~v~ps~~e~~~~~~~Eam~~G~pvI~~-~~~~~~e~i~ 151 (196)
T d2bfwa1 112 VDFVIIPSYFEPFGLVALEAMCLGAIPIAS-AVGGLRDIIT 151 (196)
T ss_dssp CSEEEECCSCCSSCHHHHHHHHTTCEEEEE-SCHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCEEEEC-CCCCCCEEEC
T ss_conf 233443222112332201333148604651-7885320102
No 41
>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug {Escherichia coli [TaxId: 562]}
Probab=31.79 E-value=5.1 Score=18.15 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=23.1
Q ss_pred HHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEECC
Q ss_conf 986107881699607823579999998633983142
Q gi|254780779|r 60 SDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVN 95 (278)
Q Consensus 60 ~~i~~~gg~ILFVgTk~~~~~~i~~~A~~~~~~yV~ 95 (278)
.++...+-+|||||+.|...+ .+.|.||++
T Consensus 3 ~d~l~p~~~vlivG~~PG~~s------~~~g~~f~~ 32 (165)
T d1muga_ 3 EDILAPGLRVVFCGINPGLSS------AGTGFPFAH 32 (165)
T ss_dssp CCBCCTTCSEEEEESSCCHHH------HHHSSTTCS
T ss_pred CCCCCCCCCEEEEECCCCHHH------HHCCCCCCC
T ss_conf 876699998899807989778------855998268
No 42
>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus thermophilus [TaxId: 274]}
Probab=31.44 E-value=15 Score=15.15 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=20.7
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCE---------EC--C--CCCCCCCCCCHHHHHHHH
Q ss_conf 07881699607823579999998633983---------14--2--334587323426665556
Q gi|254780779|r 64 ARGGRILFVATKSQASDCVMEAAKRSAQY---------CV--N--SKWLGGMMTNWKTVSQSI 113 (278)
Q Consensus 64 ~~gg~ILFVgTk~~~~~~i~~~A~~~~~~---------yV--~--~RWlGG~LTN~~ti~~si 113 (278)
.+||+|+-|||- +-+.++..+...|.. |+ - -+-.-|+||||..=+.++
T Consensus 247 ~~g~rIiAVGTT--~~RaLEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LlTNFHlP~Stl 307 (344)
T d1wdia_ 247 AEGRRVVAVGTT--VVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPRSTL 307 (344)
T ss_dssp HTTCCEEEESHH--HHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTTCHH
T ss_pred HCCCCEEEEEHH--HHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCEECEEEECCCCCCCHH
T ss_conf 739958999578--9999999997089857788756869789997748186244684780299
No 43
>d2a2la1 d.110.9.1 (A:4-145) DhaI homolog {Klebsiella pneumoniae [TaxId: 573]}
Probab=30.60 E-value=9.7 Score=16.35 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=24.5
Q ss_pred HHHHHHHHCCCEE-EEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 2321234339814-54036776700115203215772689999999999999
Q gi|254780779|r 172 LAIQEARRLRIPI-VAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAA 222 (278)
Q Consensus 172 ~Av~EA~kl~IPv-IaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai 222 (278)
.|+.+|...|.|+ |++||.+.++- +..-..+-+..++++-...--.+.
T Consensus 21 ~a~~~a~~~g~~v~iaVvD~~G~l~---~~~R~dga~~~s~~~a~~KA~Ta~ 69 (142)
T d2a2la1 21 AVEKKATEINVAVVFSVVDRGGNTL---LIQRMDEAFVSSCDISLNKAWSAC 69 (142)
T ss_dssp HHHHHHHHTTCCCEEEEEETTSCEE---EEEECTTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEECCCCCEE---EEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999829956999996999889---999559997344999999999888
No 44
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=29.90 E-value=16 Score=14.98 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=15.7
Q ss_pred CCEEEEECCCCC---CHHHHHHHHCCCEEEEE
Q ss_conf 957999438877---12321234339814540
Q gi|254780779|r 159 PDLMFVVDTNRE---KLAIQEARRLRIPIVAV 187 (278)
Q Consensus 159 P~~iiv~d~~~e---~~Av~EA~kl~IPvIai 187 (278)
+++||..+-.-- ..|++|+.+-.+.+||+
T Consensus 190 ~~aI~~~nd~~a~ga~~al~~~g~~~~~~vg~ 221 (316)
T d1tjya_ 190 LDAIIAPDANALPAAAQAAENLKRNNLAIVGF 221 (316)
T ss_dssp CCEEEECSTTHHHHHHHHHHHTTCCSCEEEEB
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 72899888689999999999759987089998
No 45
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]}
Probab=29.25 E-value=16 Score=14.91 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=29.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCEEEEECCC-CCCCHHCCCEEEECCCCHHHHH
Q ss_conf 95799943887712321234339814540367-7670011520321577268999
Q gi|254780779|r 159 PDLMFVVDTNREKLAIQEARRLRIPIVAVVDT-NSNPDLVDYVIPGNDDSSRSIA 212 (278)
Q Consensus 159 P~~iiv~d~~~e~~Av~EA~kl~IPvIaivDT-n~dp~~idypIP~NDds~~si~ 212 (278)
=|.+|++.-..-......-...+||+|||--| |.|-...||.+ |=|-|++.+.
T Consensus 95 I~~li~iGG~~s~~~a~~l~~~~~~vigiPkTIDNDl~~td~s~-Gf~TA~~~~~ 148 (320)
T d1pfka_ 95 IDALVVIGGDGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTI-GFFTALSTVV 148 (320)
T ss_dssp CCEEEEEECHHHHHHHHHHHHTTCCEEEEEBCTTCCCTTCSCCB-THHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC-CHHHHHHHHH
T ss_conf 98899967965899999987516652223014317888867888-3488999999
No 46
>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}
Probab=28.27 E-value=9.2 Score=16.52 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=9.4
Q ss_pred HHHHHHHCCCEEEEECCC
Q ss_conf 321234339814540367
Q gi|254780779|r 173 AIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 173 Av~EA~kl~IPvIaivDT 190 (278)
.|+=|.+.|||+|.++||
T Consensus 94 fi~lc~~~~iPlv~l~D~ 111 (264)
T d1on3a2 94 FVNFCDSFNIPLVQLVDV 111 (264)
T ss_dssp HHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHCCCCEEEEECC
T ss_conf 999998609825998504
No 47
>d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium [TaxId: 1404]}
Probab=28.01 E-value=8.2 Score=16.83 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=36.4
Q ss_pred CCCEEEEECCC--------------------------CCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHH
Q ss_conf 59579994388--------------------------7712321234339814540367767001152032157726899
Q gi|254780779|r 158 LPDLMFVVDTN--------------------------REKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSI 211 (278)
Q Consensus 158 lP~~iiv~d~~--------------------------~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si 211 (278)
.||+|+++|.- +...++.| ..|||||||| .=|+.||-+.-+|| ++
T Consensus 186 kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~-etLGVPVIAI----GVPTVVdAatI~~D----ti 256 (371)
T d1c8ba_ 186 NPDFIIAIDALAARSIERVNATIQISDSGIHPGSGVGNKRKEISY-ETLGIPVIAI----GIPTVVDAVSITSD----TI 256 (371)
T ss_dssp CCSEEEEEEEECCSSGGGSSSEEEEETTCBCSCSSSSCCCCBSSS-CCC-------------CCCEEEEEEECC----EE
T ss_pred CCCEEEEECHHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCH-HHCCCCEEEE----CCCEEEEHHHHHHH----HH
T ss_conf 898999960101375233356478667785888776755563798-7829988997----68806601998789----99
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780779|r 212 ALFCDLVA 219 (278)
Q Consensus 212 ~l~~~~i~ 219 (278)
.+++..++
T Consensus 257 d~~~~~~~ 264 (371)
T d1c8ba_ 257 DFILKHFG 264 (371)
T ss_dssp SCCCHHHH
T ss_pred HHHHHHHH
T ss_conf 99999875
No 48
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Probab=27.70 E-value=9.8 Score=16.33 Aligned_cols=18 Identities=17% Similarity=0.528 Sum_probs=8.9
Q ss_pred HHHHHHHCCCEEEEECCC
Q ss_conf 321234339814540367
Q gi|254780779|r 173 AIQEARRLRIPIVAVVDT 190 (278)
Q Consensus 173 Av~EA~kl~IPvIaivDT 190 (278)
.++=|.+.|||+|.++||
T Consensus 92 fi~lc~~~~iPli~l~d~ 109 (263)
T d1xnya2 92 FVRTCDAFNVPVLTFVDV 109 (263)
T ss_dssp HHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHCCCEEEEECC
T ss_conf 999999719856986202
No 49
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=27.46 E-value=17 Score=14.71 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=20.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCE
Q ss_conf 359579994388771232123433981
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARRLRIP 183 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~kl~IP 183 (278)
..|+++|+.+...-.-+++.+...|+.
T Consensus 176 ~~~~ai~~~~~~~a~~~~~~l~~~g~~ 202 (271)
T d1jyea_ 176 IVPTAMLVANDQMALGAMRAITESGLR 202 (271)
T ss_dssp CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 565211123204445787867875056
No 50
>d1g99a1 c.55.1.2 (A:1-197) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]}
Probab=27.44 E-value=12 Score=15.77 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=22.6
Q ss_pred HHHHHHHHC--CCEEEEECCCC----CCCHHCCCEEEEC
Q ss_conf 232123433--98145403677----6700115203215
Q gi|254780779|r 172 LAIQEARRL--RIPIVAVVDTN----SNPDLVDYVIPGN 204 (278)
Q Consensus 172 ~Av~EA~kl--~IPvIaivDTn----~dp~~idypIP~N 204 (278)
.+|+.|..+ ++|-|++.||- -+|.--.|+||-.
T Consensus 129 ~~i~~~~~~~p~~p~vavfDtaFh~~~p~~a~~y~lP~~ 167 (197)
T d1g99a1 129 MGISACAEIMPGTPMVIVFDTAFHQTMPPYAYMYALPYD 167 (197)
T ss_dssp HHHHHHHHHCTTSCEEEEETTGGGGGCCHHHHCCSSCHH
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHCCCCHH
T ss_conf 999999986899897999288412367688987289999
No 51
>d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}
Probab=27.22 E-value=18 Score=14.68 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=22.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHH--CCCEEEEECCC
Q ss_conf 35957999438877123212343--39814540367
Q gi|254780779|r 157 GLPDLMFVVDTNREKLAIQEARR--LRIPIVAVVDT 190 (278)
Q Consensus 157 ~lP~~iiv~d~~~e~~Av~EA~k--l~IPvIaivDT 190 (278)
..|+++|+.-.+-. ..+.||-+ -++.+||+||.
T Consensus 151 ~~P~A~vl~~tNP~-~~~t~a~~~y~~~~~iG~C~~ 185 (193)
T d1vjta1 151 MAPKAYLMQTANPV-FEITQAVRRWTGANIVGFCHG 185 (193)
T ss_dssp HCTTCEEEECSSCH-HHHHHHHHHHSCCCEEECCCG
T ss_pred CCCCCEEEEECCHH-HHHHHHHHHCCCCCEEEECCC
T ss_conf 19960799965938-999999985689999997875
No 52
>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=26.84 E-value=18 Score=14.64 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=25.7
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHH-HHHCCCEEEEECCCC-CCCH
Q ss_conf 3221135957999438877123212-343398145403677-6700
Q gi|254780779|r 152 IRDMGGLPDLMFVVDTNREKLAIQE-ARRLRIPIVAVVDTN-SNPD 195 (278)
Q Consensus 152 i~~m~~lP~~iiv~d~~~e~~Av~E-A~kl~IPvIaivDTn-~dp~ 195 (278)
++.+.+..|++++-.+.. .++++ +...+||||--.|++ .-|.
T Consensus 88 ~~~l~~~~d~iv~R~~~~--~~~~~~~~~~~vpvINag~~~~~HP~ 131 (146)
T d1pg5a1 88 IRMLNNYSDGIVMRHKYD--GASRFASEISDIPVINAGDGKHEHPT 131 (146)
T ss_dssp HHHHHHHCSEEEEEESSB--THHHHHHHHCSSCEEEEEETTTBCHH
T ss_pred HHHHHHCCCEEEEEECCC--CCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 867652287699985134--42122411588167989889898740
No 53
>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.95 E-value=11 Score=16.00 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=13.4
Q ss_pred HHHHHHHHCCCEEEEECCCCC
Q ss_conf 232123433981454036776
Q gi|254780779|r 172 LAIQEARRLRIPIVAVVDTNS 192 (278)
Q Consensus 172 ~Av~EA~kl~IPvIaivDTn~ 192 (278)
..|+-|...+||+|.++||-.
T Consensus 96 rfi~lc~~~~iPlv~l~dtpG 116 (271)
T d2a7sa2 96 RFVRTCDCFNIPIVMLVDVPG 116 (271)
T ss_dssp HHHHHHHHTTCCEEEEEEECC
T ss_pred HHHHHHHHHCCCEEEEECHHH
T ss_conf 999999981874577400265
No 54
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}
Probab=25.90 E-value=19 Score=14.53 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=19.8
Q ss_pred CCEEEEECCC------CCCHHHHHHHHCCCEEEEEC
Q ss_conf 9579994388------77123212343398145403
Q gi|254780779|r 159 PDLMFVVDTN------REKLAIQEARRLRIPIVAVV 188 (278)
Q Consensus 159 P~~iiv~d~~------~e~~Av~EA~kl~IPvIaiv 188 (278)
||.+++.+-. ....++.++...++|+.|||
T Consensus 49 ~~giils~gp~~~~~~~~~~~~~~~~~~~~PiLGIC 84 (205)
T d1gpma2 49 PSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVC 84 (205)
T ss_dssp CSEEEECCCSSCTTSTTCCCCCGGGGTSSSCEEEET
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 986785698875410123467899970799889963
No 55
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}
Probab=25.78 E-value=19 Score=14.52 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=34.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHHCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 79994388771232123433981454036776700115203215772689999999999999999
Q gi|254780779|r 161 LMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDG 225 (278)
Q Consensus 161 ~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~idypIP~NDds~~si~l~~~~i~~ai~~g 225 (278)
+|.......+++=+.+|++.||||. |+ |. +|.+|+.-+.+-+-.+..++..|
T Consensus 70 ~I~~~gvG~d~ID~~~a~~~gI~V~-----nt-pg-------~~~~aVAE~A~~~~~l~~~l~~~ 121 (129)
T d1gdha2 70 CISTYSIGFDHIDLDACKARGIKVG-----NA-PH-------GATQAREDMAHQANDLIDALFGG 121 (129)
T ss_dssp EEEEESSCCTTBCHHHHHHTTCEEE-----CC-CC-------SBHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCHHHHHHCCCEEE-----EC-CC-------CCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 5555156986436999986999899-----79-99-------77567999999999999998578
No 56
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.76 E-value=14 Score=15.24 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=23.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH-CC--CCCCCHHHHHHHHHH
Q ss_conf 458732342666555677899887630-12--126774678876655
Q gi|254780779|r 98 WLGGMMTNWKTVSQSIQKLRDLEELLN-KE--NQGFTKKERLNIERK 141 (278)
Q Consensus 98 WlGG~LTN~~ti~~si~~l~~l~~~~~-~~--~~~~tkKe~~~~~r~ 141 (278)
++=|||||+.. -.+.|.+..-++.- ++ +...|-.|.-.+.-+
T Consensus 12 yI~gMLtN~~s--lpleRIh~mLkmfv~~~~~~~~~t~~eL~~FL~~ 56 (74)
T d1ldda_ 12 FIEGMLTNLGA--MKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNT 56 (74)
T ss_dssp HHHHHHHHHCS--EEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCC--CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999966787--8899999999987579999787699999999999
No 57
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}
Probab=25.39 E-value=19 Score=14.47 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECC---HHHHHHHHHHHHHCCCEECCCCCCCCCCC
Q ss_conf 99999999999861078816996078---23579999998633983142334587323
Q gi|254780779|r 50 PMLQKALQVISDTVARGGRILFVATK---SQASDCVMEAAKRSAQYCVNSKWLGGMMT 104 (278)
Q Consensus 50 ~~L~~A~~~i~~i~~~gg~ILFVgTk---~~~~~~i~~~A~~~~~~yV~~RWlGG~LT 104 (278)
..|.+|...|.. ...-++++|.. ..+.+.+.++|+.+|.|.++..---|.+-
T Consensus 7 ~~l~~a~~~L~~---A~rPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~~~~g~~~ 61 (175)
T d2ji7a1 7 DAIARAADLIKN---AKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLP 61 (175)
T ss_dssp HHHHHHHHHHHT---CSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTBTTBC
T ss_pred HHHHHHHHHHHH---CCCEEEEECCCCCCCCCHHHHHHHHHHCEEEEECCCCCCCCCC
T ss_conf 999999999984---8998999887924110279999976530410212342235688
No 58
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Probab=25.02 E-value=12 Score=15.82 Aligned_cols=14 Identities=43% Similarity=0.688 Sum_probs=4.9
Q ss_pred HHHCCCEEEEECCC
Q ss_conf 34339814540367
Q gi|254780779|r 177 ARRLRIPIVAVVDT 190 (278)
Q Consensus 177 A~kl~IPvIaivDT 190 (278)
|.+.|||+|.++||
T Consensus 98 c~~~~iPli~l~Dt 111 (264)
T d1vrga2 98 LDAFNIPILTFVDT 111 (264)
T ss_dssp HHHTTCCEEEEEEE
T ss_pred HHHHCCCEEEEEEC
T ss_conf 99819726887620
No 59
>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus [TaxId: 5724]}
Probab=24.46 E-value=9.9 Score=16.30 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=13.7
Q ss_pred HCCCCEEEEEECCHHHHHHH
Q ss_conf 10788169960782357999
Q gi|254780779|r 63 VARGGRILFVATKSQASDCV 82 (278)
Q Consensus 63 ~~~gg~ILFVgTk~~~~~~i 82 (278)
+.+.++||||+|....+..+
T Consensus 1 ~~~k~~VLFVC~gN~cRSpm 20 (146)
T d1p8aa_ 1 AAEKKAVLFVCLGNICRSPA 20 (146)
T ss_dssp CCCCCCEEEESSSSCSSSTT
T ss_pred CCCCCEEEEEECCCHHHHHH
T ss_conf 99999899997976899999
No 60
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=23.82 E-value=20 Score=14.28 Aligned_cols=118 Identities=9% Similarity=0.094 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999861078816996078-235799999986339831423345873234266655567789988763012126
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATK-SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQG 129 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk-~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~ 129 (278)
.+.++...|.. ...-++++|-. .++.+.+.++|+++|.|+++..=--|.+-+-. ...-|....
T Consensus 19 ~i~~~~~~L~~---A~rPvii~G~G~~~a~~~l~~lae~~~~Pv~tt~~~~g~~~~~h-------------p~~~G~~G~ 82 (183)
T d2ez9a1 19 AVTRLTQTLLA---AERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKGIVADRY-------------PAYLGSANR 82 (183)
T ss_dssp HHHHHHHHHHH---CSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECGGGTTSSCTTC-------------TTBCCCCSS
T ss_pred HHHHHHHHHHH---CCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCC-------------CCCCCCCCC
T ss_conf 99999999983---79939998378063549999876404337986214554432347-------------643333223
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHH------CCCEEEE
Q ss_conf 7746788766556777643443322113595799943887712321234339814540367767001------1520321
Q gi|254780779|r 130 FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDL------VDYVIPG 203 (278)
Q Consensus 130 ~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~------idypIP~ 203 (278)
+.......+. +--|+|++++..-..........-+-++|.| |.||.. .|++|.|
T Consensus 83 ~~~~~~~~~i-----------------~~aDlil~vG~~l~~~~~~~~~~~~~~iI~I---d~d~~~i~~~~~~~~~i~~ 142 (183)
T d2ez9a1 83 VAQKPANEAL-----------------AQADVVLFVGNNYPFAEVSKAFKNTRYFLQI---DIDPAKLGKRHKTDIAVLA 142 (183)
T ss_dssp SSCHHHHHHH-----------------HHCSEEEEESCCCTTTTTTTTTTTCSEEEEE---ESCGGGTTSSSCCSEEEES
T ss_pred CCCHHHHHHH-----------------HCCCCEEEEECCCCCCCCEEECCCCCCHHEE---ECCHHHHHHCCCCCEEEEE
T ss_conf 4667777666-----------------2467458862146754300101366303201---1447888505788748997
Q ss_pred C
Q ss_conf 5
Q gi|254780779|r 204 N 204 (278)
Q Consensus 204 N 204 (278)
+
T Consensus 143 D 143 (183)
T d2ez9a1 143 D 143 (183)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 61
>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}
Probab=23.77 E-value=20 Score=14.28 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=14.6
Q ss_pred CCEEEEEECCHHHHHHHHHHH
Q ss_conf 881699607823579999998
Q gi|254780779|r 66 GGRILFVATKSQASDCVMEAA 86 (278)
Q Consensus 66 gg~ILFVgTk~~~~~~i~~~A 86 (278)
+++||||+|..-.+..+.+.-
T Consensus 1 ~K~ILFVC~gN~cRSpmAEai 21 (137)
T d1jl3a_ 1 NKIIYFLCTGNSCRSQMAEGW 21 (137)
T ss_dssp CEEEEEEESSSSSHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHH
T ss_conf 988999959872688999999
No 62
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}
Probab=23.67 E-value=21 Score=14.26 Aligned_cols=118 Identities=12% Similarity=0.081 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999861078816996078-235799999986339831423345873234266655567789988763012126
Q gi|254780779|r 51 MLQKALQVISDTVARGGRILFVATK-SQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQG 129 (278)
Q Consensus 51 ~L~~A~~~i~~i~~~gg~ILFVgTk-~~~~~~i~~~A~~~~~~yV~~RWlGG~LTN~~ti~~si~~l~~l~~~~~~~~~~ 129 (278)
.+.+|.+.|. ...+-++++|-. ..+...+.++|+++|.|.++.-=--|.+-+-. ...-|.+..
T Consensus 10 ~i~~~~~~l~---~Ak~Pvii~G~g~~~a~~~l~~lae~l~~Pv~~t~~~~g~ip~~h-------------p~~~G~~g~ 73 (177)
T d2djia1 10 DIDAAVELLN---NSKRPVIYAGIGTMGHGPAVQELARKIKAPVITTGKNFETFEWDF-------------EALTGSTYR 73 (177)
T ss_dssp HHHHHHHHHH---TCSSEEEEECGGGTTCHHHHHHHHHHHTCCEEECTTCGGGSCTTC-------------TTBCCCSSS
T ss_pred HHHHHHHHHH---HCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC-------------CCCCCCCCC
T ss_conf 9999999998---389979998947645899999854134337995233443334444-------------433332223
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCHH------CCCEEEE
Q ss_conf 7746788766556777643443322113595799943887712321234339814540367767001------1520321
Q gi|254780779|r 130 FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDL------VDYVIPG 203 (278)
Q Consensus 130 ~tkKe~~~~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~~Av~EA~kl~IPvIaivDTn~dp~~------idypIP~ 203 (278)
+..+....+.. -.|+|++++..-+.....-...-+-++|-| |.||.. +|.+|-|
T Consensus 74 ~~~~~~~~~l~-----------------~aDlvi~lG~~~~~~~~~~~~~~~~kiI~I---d~d~~~i~~~~~~d~~i~g 133 (177)
T d2djia1 74 VGWKPANETIL-----------------EADTVLFAGSNFPFSEVEGTFRNVDNFIQI---DIDPAMLGKRHHADVAILG 133 (177)
T ss_dssp SSCHHHHHHHH-----------------HCSEEEEESCCCTTTTTTTTTTTCSEEEEE---ESCGGGTTSSSCCSEEEES
T ss_pred CCCHHHHHHHH-----------------CCCCEEEEECCCCCCCCEECCCCCCCHHEE---EECCCCCCCCCCCCEEEEE
T ss_conf 46754421331-----------------467458850257875411000236600067---7465225875467358985
Q ss_pred C
Q ss_conf 5
Q gi|254780779|r 204 N 204 (278)
Q Consensus 204 N 204 (278)
+
T Consensus 134 D 134 (177)
T d2djia1 134 D 134 (177)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 63
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Azotobacter vinelandii [TaxId: 354]}
Probab=23.61 E-value=21 Score=14.25 Aligned_cols=53 Identities=9% Similarity=0.002 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHH------HHHHHHHHHHCCCEECCCCCCCCCC
Q ss_conf 99999999999861078816996078235------7999999863398314233458732
Q gi|254780779|r 50 PMLQKALQVISDTVARGGRILFVATKSQA------SDCVMEAAKRSAQYCVNSKWLGGMM 103 (278)
Q Consensus 50 ~~L~~A~~~i~~i~~~gg~ILFVgTk~~~------~~~i~~~A~~~~~~yV~~RWlGG~L 103 (278)
..|++|+.-+.+.....+-|..++|-... ..++++..++.+.+-|.- ..+|..
T Consensus 126 ~kL~~~I~ei~~~~~~pk~I~V~sTC~~~lIGDDi~~v~~~~~~~~~~~Vi~v-~t~Gf~ 184 (477)
T d1m1na_ 126 KKLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPV-RCEGFR 184 (477)
T ss_dssp HHHHHHHHHHHHHCTTCCCEEEEECTHHHHHTCCHHHHHHHHHHHHTCCEEEE-CCCTTS
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCHHHHHHHHHHHHCCCEEEE-ECCCCC
T ss_conf 88999999999848998789997886799986389999999888738947999-668756
No 64
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}
Probab=23.31 E-value=6.4 Score=17.53 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=7.4
Q ss_pred HHHHHCCCEEEEE
Q ss_conf 1234339814540
Q gi|254780779|r 175 QEARRLRIPIVAV 187 (278)
Q Consensus 175 ~EA~kl~IPvIai 187 (278)
..-++.|+.++.+
T Consensus 112 ~~Lk~~g~~v~~i 124 (157)
T d1mrza2 112 SFLRKKGVEVYEI 124 (157)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHCCCEEEEEEE
T ss_conf 5532520589961
No 65
>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}
Probab=23.16 E-value=19 Score=14.47 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=21.4
Q ss_pred HHHHHHHHCCCEEEEECCC----CCCCHHCCCEEEEC
Q ss_conf 2321234339814540367----76700115203215
Q gi|254780779|r 172 LAIQEARRLRIPIVAVVDT----NSNPDLVDYVIPGN 204 (278)
Q Consensus 172 ~Av~EA~kl~IPvIaivDT----n~dp~~idypIP~N 204 (278)
.|++.|...++| +++.|| ..+|.--.|+||.-
T Consensus 112 ~a~~~~~~~~~p-v~vfDtafh~t~p~~A~~y~lP~~ 147 (172)
T d1saza1 112 IAHRFSSETGVP-AYVVDPVVVDEMEDVARVSGHPNY 147 (172)
T ss_dssp HHHHHHHHHCCC-EEEESCTTBCCCCGGGTBCSSTTC
T ss_pred HHHHHHCCCCCC-EEEECCCCCCCCCHHHHHHCCCCC
T ss_conf 999964789999-899668632366699998189972
No 66
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
Probab=22.46 E-value=22 Score=14.11 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 6655677764344332211359579994388771
Q gi|254780779|r 138 IERKRDKLKRALDGIRDMGGLPDLMFVVDTNREK 171 (278)
Q Consensus 138 ~~r~~~kl~k~lgGi~~m~~lP~~iiv~d~~~e~ 171 (278)
+.+-...+.+.++.--.|++.|.+.|+.|..-|.
T Consensus 65 L~~~~~~ir~~la~~l~~r~~P~L~F~~D~s~e~ 98 (100)
T d1josa_ 65 LEKASPYIRSLLGKAMRLRIVPEIRFIYDQSLVE 98 (100)
T ss_dssp HHHTHHHHHHHHHHHHCCSSCCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHC
T ss_conf 9998999999999766881698689995686213
No 67
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}
Probab=22.10 E-value=18 Score=14.61 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=25.4
Q ss_pred HHHHHHCCCCCEEEEECCCC-CCHHHHHHHHCCCEEEEE
Q ss_conf 43322113595799943887-712321234339814540
Q gi|254780779|r 150 DGIRDMGGLPDLMFVVDTNR-EKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 150 gGi~~m~~lP~~iiv~d~~~-e~~Av~EA~kl~IPvIai 187 (278)
..+.++..-||++++.-+.. -.-+++||..+|++.+.+
T Consensus 48 ~sl~~lp~~~D~vvi~vp~~~~~~~l~~~~~~g~k~v~~ 86 (116)
T d1y81a1 48 RSVRELPKDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWF 86 (116)
T ss_dssp SSGGGSCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEE
T ss_conf 661110211037999817899999999998669965885
No 68
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.95 E-value=19 Score=14.50 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 68999999999999
Q gi|254780779|r 208 SRSIALFCDLVASA 221 (278)
Q Consensus 208 ~~si~l~~~~i~~a 221 (278)
.+-++.|++.+.++
T Consensus 182 ~~il~~Fl~~~~~~ 195 (202)
T d1q7ra_ 182 HRLMQYFLNMVKEA 195 (202)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 69999999999986
No 69
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.34 E-value=24 Score=13.83 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=24.3
Q ss_pred CCCC--EEEEECCCCCCHHHHHHHHCCCEEEEE
Q ss_conf 3595--799943887712321234339814540
Q gi|254780779|r 157 GLPD--LMFVVDTNREKLAIQEARRLRIPIVAV 187 (278)
Q Consensus 157 ~lP~--~iiv~d~~~e~~Av~EA~kl~IPvIai 187 (278)
..|. +|....+..+++=+..|.+.||+|.-.
T Consensus 61 ~~p~Lk~I~~~g~G~d~IDl~~~~~~gI~V~n~ 93 (130)
T d1ygya2 61 AAPKLKIVARAGVGLDNVDVDAATARGVLVVNA 93 (130)
T ss_dssp TCTTCCEEEESSSCCTTBCHHHHHHTTCEEECC
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHCCCEEEEC
T ss_conf 302353886623446403499998779169946
Done!