PSIBLAST alignment of GI: 254780779 and protein with PDB id: 1vs5
gi|116666568|pdb|1VS5|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 241
>gi|116666620|pdb|1VS7|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 241
Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 112/241 (46%), Positives = 163/241 (67%), Gaps = 1/241 (0%)
Query: 3 LPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDT 62
+ ++R +L++GV FGH+ WNPKM+ +IF RN HII+L +TVPM +AL ++
Sbjct: 1 MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKI 60
Query: 63 VARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLE-E 121
+R G+ILFV TK AS+ V +AA Q+ VN +WLGGM+TNWKTV QSI++L+DLE +
Sbjct: 61 ASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQ 120
Query: 122 LLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLR 181
+ TKKE L R+ +KL+ +L GI+DMGGLPD +FV+D + E +AI+EA L
Sbjct: 121 SQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLG 180
Query: 182 IPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGADTKSAG 241
IP+ A+VDTNS+PD VD+VIPGNDD+ R++ L+ VA+ +G ++ + ++
Sbjct: 181 IPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRSQDLASQAEESFVEA 240
Query: 242 E 242
E
Sbjct: 241 E 241