RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780779|ref|YP_003065192.1| 30S ribosomal protein S2 [Candidatus Liberibacter asiaticus str. psy62] (278 letters) >3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (B:) Length = 231 Score = 253 bits (647), Expect = 2e-68 Identities = 85/226 (37%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 5 QFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVA 64 + +++E+GV FGH WNP+M YI + HII+L++T L +A ++ D + Sbjct: 3 NINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASS 62 Query: 65 RGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLN 124 RG + L V TK++A+D V AA R+ + VN KWLGGM+TNW T + K RDL Sbjct: 63 RGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQT 122 Query: 125 KEN-QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP 183 K++ ++R+ L+ L GI+ M GLPD++ +VD E A++E L IP Sbjct: 123 AGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIP 182 Query: 184 IVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQ 229 + ++DTN NPDL D IP NDD+ SI L + A +G + Sbjct: 183 TICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSY 228 >2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (B:) Length = 256 Score = 235 bits (599), Expect = 7e-63 Identities = 103/233 (44%), Positives = 148/233 (63%), Gaps = 1/233 (0%) Query: 5 QFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVA 64 + T+++LLE+GV FGH WNPK RYI+ ERN HIIDL +T+ L++ + I D Sbjct: 4 EITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAM 63 Query: 65 RGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLN 124 RGG ILFV TK QA D V A+R+ VN +WLGGM+TN+KT+SQ + +L +LE L Sbjct: 64 RGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFA 123 Query: 125 KEN-QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP 183 + KKE++ ++ + ++L++ L G R + LPD +FVVD +E +A++EAR+L IP Sbjct: 124 SPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIP 183 Query: 184 IVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGAD 236 ++A+ DT+S+PDLVDY+IPGNDD+ RSI L I + Sbjct: 184 VIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSY 236 >3i1m_B 30S ribosomal protein S2; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 2qal_B* 1p87_B 2aw7_B 2avy_B 2i2u_B 2i2p_B* 2qan_B* 2qb9_B* 2qbb_B* 2qbd_B 2qbf_B ... (B:46-241) Length = 196 Score = 198 bits (504), Expect = 8e-52 Identities = 92/196 (46%), Positives = 130/196 (66%), Gaps = 1/196 (0%) Query: 48 TVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWK 107 TVPM +AL ++ +R G+ILFV TK AS+ V +AA Q+ VN +WLGGM+TNWK Sbjct: 1 TVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWK 60 Query: 108 TVSQSIQKLRDLEELLNKENQ-GFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVD 166 TV QSI++L+DLE TKKE L R+ +KL+ +L GI+DMGGLPD +FV+D Sbjct: 61 TVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVID 120 Query: 167 TNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGI 226 + E +AI+EA L IP+ A+VDTNS+PD VD+VIPGNDD+ R++ L+ VA+ +G Sbjct: 121 ADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 180 Query: 227 ARQHSYMGADTKSAGE 242 ++ + ++ E Sbjct: 181 SQDLASQAEESFVEAE 196 >2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (b:) Length = 295 Score = 185 bits (470), Expect = 5e-48 Identities = 42/275 (15%), Positives = 93/275 (33%), Gaps = 49/275 (17%) Query: 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNN-THIIDLSQTVPMLQKALQVI 59 + + + + + L +G G N + +ME+YI+ +++ +II+L +T L A + I Sbjct: 8 LQMKEEDVLKFLAAGTHLGGTN--LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAI 65 Query: 60 SDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119 + +++++ V++ A + + ++ G TN Sbjct: 66 VAIE-NPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQA---------- 114 Query: 120 EELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARR 179 P L+ V D + + EA Sbjct: 115 -----------------------------------AFREPRLLVVTDPRADHQPLTEASY 139 Query: 180 LRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGADTKS 239 + +P +A+ +T+S VD IP N+ + S+ L ++A + + Sbjct: 140 VNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMP 199 Query: 240 AGETVVHSKEGMQLEEDSQSSESSVLDGQEVAVVP 274 +E + E+ + + + Q P Sbjct: 200 DLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAP 234 >3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} (A:) Length = 253 Score = 179 bits (455), Expect = 4e-46 Identities = 40/258 (15%), Positives = 90/258 (34%), Gaps = 49/258 (18%) Query: 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNN-THIIDLSQTVPMLQKALQVI 59 + + + + + L +G G N + +ME+YI+ +++ +II+L +T L A + I Sbjct: 41 LQMKEEDVLKFLAAGTHLGGTN--LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAI 98 Query: 60 SDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119 + + +++++ V++ A + + ++ G TN Sbjct: 99 VA-IENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQA---------- 147 Query: 120 EELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARR 179 P L+ V D + + EA Sbjct: 148 -----------------------------------AFREPRLLVVTDPRADHQPLTEASY 172 Query: 180 LRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGADTKS 239 + +P +A+ +T+S VD IP N+ + S+ L ++A + + Sbjct: 173 VNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMP 232 Query: 240 AGETVVHSKEGMQLEEDS 257 +E + E+ + Sbjct: 233 DLYFYRDPEEIEKEEQAA 250 >3jyv_B 40S ribosomal protein S0(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_B (B:) Length = 193 Score = 175 bits (444), Expect = 6e-45 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 49/224 (21%) Query: 3 LPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERN-NTHIIDLSQTVPMLQKALQVISD 61 L + LL + G RN E Y+F R H+I++ +T L A ++I+ Sbjct: 1 LTPEDAQLLLAANTHLGARN--VQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAA 58 Query: 62 TVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEE 121 ++ +++++ V++ A + + ++ G TN+ T Sbjct: 59 I-PNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYIT------------- 104 Query: 122 LLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLR 181 P L+ V D + AI+EA + Sbjct: 105 --------------------------------RSFKEPRLVIVTDPRSDAQAIKEASYVN 132 Query: 182 IPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDG 225 IP++A+ D +S + VD IP N+ SI L L+A + Sbjct: 133 IPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRL 176 >1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} (A:) Length = 208 Score = 169 bits (430), Expect = 3e-43 Identities = 46/237 (19%), Positives = 87/237 (36%), Gaps = 50/237 (21%) Query: 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNN-THIIDLSQTVPMLQKALQVI 59 L +GV G + M+++IF R + +++D+ + ++ A + + Sbjct: 6 EYEYLVPPDDYLAAGVHIGTQI--KTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFL 63 Query: 60 SDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119 S +IL VA + A V +K + +++ G +TN Sbjct: 64 SR--YEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREP----- 116 Query: 120 EELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARR 179 +++FV D +K A+ EA Sbjct: 117 ----------------------------------------EVVFVNDPAIDKQAVSEATA 136 Query: 180 LRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGAD 236 + IP+VA+ D+N++ VD VIP N+ R++A+ L+A + +Y D Sbjct: 137 VGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQDFTYSIED 193 >1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} (A:263-448) Length = 186 Score = 32.1 bits (72), Expect = 0.090 Identities = 5/38 (13%), Positives = 18/38 (47%) Query: 38 NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATK 75 N + ++++ +L V++ + RG +++ + Sbjct: 149 NQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLXQ 186 >3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} (A:1-121,A:264-350) Length = 208 Score = 30.7 bits (69), Expect = 0.22 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 2/77 (2%) Query: 137 NIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKL-AIQEARRLRIPIVAVVDTNSNPD 195 ER + + PD + +V+ ++ ++ I + +V++ D Sbjct: 41 YAERDPQNTLQQARELFQGRDKPDYLXLVNEQYVAPQILRLSQGSGIKLF-IVNSPLTLD 99 Query: 196 LVDYVIPGNDDSSRSIA 212 + + + S I Sbjct: 100 QRELIGQSRQNYSDWIG 116 >2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_I (h:) Length = 214 Score = 29.9 bits (67), Expect = 0.40 Identities = 25/147 (17%), Positives = 41/147 (27%), Gaps = 39/147 (26%) Query: 28 KMERYIFCERNNTHIIDLSQTVPMLQKALQV--------ISDTVARG--GRILF-VATKS 76 I LQ TVA+ G+++ + TK Sbjct: 83 DGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMSIRTKL 142 Query: 77 QASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERL 136 Q + V+EA +R+ K +++ + GFTK Sbjct: 143 QNKEHVIEALRRAKF-----------------------KFPGRQKIHISKKWGFTKFNAD 179 Query: 137 NIERKRDKLKRALDG-----IRDMGGL 158 E + + DG I + G L Sbjct: 180 EFENMVAEKRLIPDGCGVKYIPNRGPL 206 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 29.5 bits (66), Expect = 0.48 Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Query: 125 KENQGFTKKER--LNIERKRDKLKRALDGIRDM 155 +E+ K LN++ ++ +L I+D Sbjct: 11 REHHSSVKYASPNLNMKYRKRQLVTREAQIKDW 43 >3hba_A Putative phosphosugar isomerase; YP_563707.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217} (A:42-147) Length = 106 Score = 27.9 bits (62), Expect = 1.7 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 6/49 (12%) Query: 160 DLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVIP 202 L+ V+ + + A+ VA+V+ + P D+VD VIP Sbjct: 51 GLVIVISQSGRSPDILAQARXAKNAGAFCVALVNDETAPIKDIVDVVIP 99 >3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} (A:1-114,A:247-292) Length = 160 Score = 27.7 bits (61), Expect = 2.0 Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 2/64 (3%) Query: 137 NIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDL 196 E + + + ++ + ++ + IQ P V + D Sbjct: 50 TGETEEEIFNGVVKXVQGRQ--IGGIILLYSRENDRIIQYLHEQNFPFVLIGKPYDRKDE 107 Query: 197 VDYV 200 + YV Sbjct: 108 ITYV 111 >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} (A:1-161) Length = 161 Score = 26.5 bits (58), Expect = 3.6 Identities = 9/73 (12%), Positives = 18/73 (24%) Query: 110 SQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNR 169 E L T R ++ R K +R + + Sbjct: 43 CYKTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKSETI 102 Query: 170 EKLAIQEARRLRI 182 K +Q +++ Sbjct: 103 SKEFVQFCQKISA 115 >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A (A:157-323) Length = 167 Score = 26.7 bits (59), Expect = 3.6 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 152 IRDMGGLPDLMFVVDTNREKLAIQ-EARRLRIPIVAVVD 189 + G LP V+ +N +A+ + +A +D Sbjct: 125 LMPEGQLPRTGAVIGSNAAHIAVAVDEDAQTFVAIAAID 163 >1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} (A:1-85,A:215-288) Length = 159 Score = 26.5 bits (58), Expect = 3.9 Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 7/103 (6%) Query: 28 KMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVAT---KSQASDCVME 84 + I + + T + Q + AL+ R G + V+T Sbjct: 2 NAXKLIAIDLDGTLLNSKHQVSLENENALR----QAQRDGIEVVVSTGRAHFDVXSIFEP 57 Query: 85 AAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127 ++ N + K + L+ L + N Sbjct: 58 LGIKTWVISANGAVIHDPEGRLYHHETIASKGQALKRLAKQLN 100 >3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:1-157,A:286-333) Length = 205 Score = 26.5 bits (57), Expect = 4.0 Identities = 16/169 (9%), Positives = 48/169 (28%), Gaps = 13/169 (7%) Query: 54 KALQVISDTVAR---GGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVS 110 + V T +R G + T+ + E Q + + Sbjct: 14 ELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYVPNQLAKALREHRSALVGVIVPD 73 Query: 111 QSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE 170 S + + + + ++ + + + ++ + + + V Sbjct: 74 LSNEYYSESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQ--AAGIIHVP---- 127 Query: 171 KLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSR-SIALFCDLV 218 + IP+V + V+ +++ + ++ L DL+ Sbjct: 128 --VVGSIAPEGIPMV-QLTRGELGPGFPRVLCDHEEMGKEAVRLLVDLI 173 >3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} (A:1-116,A:254-304) Length = 167 Score = 26.5 bits (58), Expect = 4.3 Identities = 6/60 (10%), Positives = 16/60 (26%), Gaps = 4/60 (6%) Query: 143 DKLKRALDGIRDMGGLPDLMFVVDTNREKL--AIQEARRLRIPIVAVVDTNSNPDLVDYV 200 + + + PD + T + L IP + + + + + Sbjct: 56 NSFVATSQAVIEEQ--PDGVXFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDAPPLAFF 113 >3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:1-108,A:240-290) Length = 159 Score = 25.8 bits (56), Expect = 5.7 Identities = 6/62 (9%), Positives = 19/62 (30%), Gaps = 4/62 (6%) Query: 139 ERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVD 198 ++ K AL + + ++ +Q + +P + + D Sbjct: 48 SADPEEQKHALLTAIERP--VXGILLLSIALTDDNLQLLQSSDVPYC-FLSXGFDDD-RP 103 Query: 199 YV 200 ++ Sbjct: 104 FI 105 >3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str} (A:) Length = 201 Score = 25.9 bits (56), Expect = 6.2 Identities = 4/53 (7%), Positives = 14/53 (26%), Gaps = 6/53 (11%) Query: 155 MGGLPDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVI 201 + D++ ++ I + ++ V + + D Sbjct: 89 VLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFF 141 >1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} (A:40-184) Length = 145 Score = 25.7 bits (56), Expect = 7.0 Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 8/141 (5%) Query: 136 LNIERKRDKLKRAL-DGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP----IVAVVDT 190 N R L R + + D G DL+F +A A L + + Sbjct: 1 FNTGRDLALLGRFYAEALVDSGIEFDLLFGPAYKGIPIATTTAVALAEHHDKDLPYCFNR 60 Query: 191 NSNPDLVDYVIPGNDDSSRSIALFCDLVASA-AIDGIARQHSYMGADTKSAGETVVHSKE 249 D + + L D++ + AI GA AG + ++ Sbjct: 61 KEAKDHGEGGSLVGSALQGRVMLVDDVITAGTAIRESMEIIQAHGA--TLAGVLISLDRQ 118 Query: 250 GMQLEEDSQSSESSVLDGQEV 270 E S E G +V Sbjct: 119 ERGRGEISAIQEVERDYGCKV 139 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.317 0.132 0.372 Gapped Lambda K H 0.267 0.0561 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,003,752 Number of extensions: 85228 Number of successful extensions: 317 Number of sequences better than 10.0: 1 Number of HSP's gapped: 301 Number of HSP's successfully gapped: 37 Length of query: 278 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 191 Effective length of database: 2,015,014 Effective search space: 384867674 Effective search space used: 384867674 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.0 bits)