RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780779|ref|YP_003065192.1| 30S ribosomal protein S2
[Candidatus Liberibacter asiaticus str. psy62]
(278 letters)
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} (B:)
Length = 231
Score = 253 bits (647), Expect = 2e-68
Identities = 85/226 (37%), Positives = 126/226 (55%), Gaps = 1/226 (0%)
Query: 5 QFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVA 64
+ +++E+GV FGH WNP+M YI + HII+L++T L +A ++ D +
Sbjct: 3 NINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASS 62
Query: 65 RGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLN 124
RG + L V TK++A+D V AA R+ + VN KWLGGM+TNW T + K RDL
Sbjct: 63 RGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQT 122
Query: 125 KEN-QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP 183
K++ ++R+ L+ L GI+ M GLPD++ +VD E A++E L IP
Sbjct: 123 AGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIP 182
Query: 184 IVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQ 229
+ ++DTN NPDL D IP NDD+ SI L + A +G +
Sbjct: 183 TICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSY 228
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} (B:)
Length = 256
Score = 235 bits (599), Expect = 7e-63
Identities = 103/233 (44%), Positives = 148/233 (63%), Gaps = 1/233 (0%)
Query: 5 QFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVA 64
+ T+++LLE+GV FGH WNPK RYI+ ERN HIIDL +T+ L++ + I D
Sbjct: 4 EITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAM 63
Query: 65 RGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLN 124
RGG ILFV TK QA D V A+R+ VN +WLGGM+TN+KT+SQ + +L +LE L
Sbjct: 64 RGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFA 123
Query: 125 KEN-QGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP 183
+ KKE++ ++ + ++L++ L G R + LPD +FVVD +E +A++EAR+L IP
Sbjct: 124 SPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIP 183
Query: 184 IVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGAD 236
++A+ DT+S+PDLVDY+IPGNDD+ RSI L I +
Sbjct: 184 VIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSY 236
>3i1m_B 30S ribosomal protein S2; ribosome structure, protein-RNA
complex, ribonucleoprotein, ribosomal protein,
RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
{Escherichia coli k-12} PDB: 1vs7_B* 3e1a_B 3e1c_B
1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 2qal_B* 1p87_B
2aw7_B 2avy_B 2i2u_B 2i2p_B* 2qan_B* 2qb9_B* 2qbb_B*
2qbd_B 2qbf_B ... (B:46-241)
Length = 196
Score = 198 bits (504), Expect = 8e-52
Identities = 92/196 (46%), Positives = 130/196 (66%), Gaps = 1/196 (0%)
Query: 48 TVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWK 107
TVPM +AL ++ +R G+ILFV TK AS+ V +AA Q+ VN +WLGGM+TNWK
Sbjct: 1 TVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWK 60
Query: 108 TVSQSIQKLRDLEELLNKENQ-GFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVD 166
TV QSI++L+DLE TKKE L R+ +KL+ +L GI+DMGGLPD +FV+D
Sbjct: 61 TVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVID 120
Query: 167 TNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGI 226
+ E +AI+EA L IP+ A+VDTNS+PD VD+VIPGNDD+ R++ L+ VA+ +G
Sbjct: 121 ADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 180
Query: 227 ARQHSYMGADTKSAGE 242
++ + ++ E
Sbjct: 181 SQDLASQAEESFVEAE 196
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris} (b:)
Length = 295
Score = 185 bits (470), Expect = 5e-48
Identities = 42/275 (15%), Positives = 93/275 (33%), Gaps = 49/275 (17%)
Query: 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNN-THIIDLSQTVPMLQKALQVI 59
+ + + + + L +G G N + +ME+YI+ +++ +II+L +T L A + I
Sbjct: 8 LQMKEEDVLKFLAAGTHLGGTN--LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAI 65
Query: 60 SDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119
+ +++++ V++ A + + ++ G TN
Sbjct: 66 VAIE-NPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQA---------- 114
Query: 120 EELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARR 179
P L+ V D + + EA
Sbjct: 115 -----------------------------------AFREPRLLVVTDPRADHQPLTEASY 139
Query: 180 LRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGADTKS 239
+ +P +A+ +T+S VD IP N+ + S+ L ++A + +
Sbjct: 140 VNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMP 199
Query: 240 AGETVVHSKEGMQLEEDSQSSESSVLDGQEVAVVP 274
+E + E+ + + + Q P
Sbjct: 200 DLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAP 234
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal
protein, acetylation, cytoplasm, phosphorylation,
polymorphism; 2.15A {Homo sapiens} (A:)
Length = 253
Score = 179 bits (455), Expect = 4e-46
Identities = 40/258 (15%), Positives = 90/258 (34%), Gaps = 49/258 (18%)
Query: 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNN-THIIDLSQTVPMLQKALQVI 59
+ + + + + L +G G N + +ME+YI+ +++ +II+L +T L A + I
Sbjct: 41 LQMKEEDVLKFLAAGTHLGGTN--LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAI 98
Query: 60 SDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119
+ + +++++ V++ A + + ++ G TN
Sbjct: 99 VA-IENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQA---------- 147
Query: 120 EELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARR 179
P L+ V D + + EA
Sbjct: 148 -----------------------------------AFREPRLLVVTDPRADHQPLTEASY 172
Query: 180 LRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGADTKS 239
+ +P +A+ +T+S VD IP N+ + S+ L ++A + +
Sbjct: 173 VNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMP 232
Query: 240 AGETVVHSKEGMQLEEDS 257
+E + E+ +
Sbjct: 233 DLYFYRDPEEIEKEEQAA 250
>3jyv_B 40S ribosomal protein S0(A); eukaryotic ribosome, RACK1
protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG
PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
PDB: 1s1h_B (B:)
Length = 193
Score = 175 bits (444), Expect = 6e-45
Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 49/224 (21%)
Query: 3 LPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERN-NTHIIDLSQTVPMLQKALQVISD 61
L + LL + G RN E Y+F R H+I++ +T L A ++I+
Sbjct: 1 LTPEDAQLLLAANTHLGARN--VQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAA 58
Query: 62 TVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEE 121
++ +++++ V++ A + + ++ G TN+ T
Sbjct: 59 I-PNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYIT------------- 104
Query: 122 LLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLR 181
P L+ V D + AI+EA +
Sbjct: 105 --------------------------------RSFKEPRLVIVTDPRSDAQAIKEASYVN 132
Query: 182 IPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDG 225
IP++A+ D +S + VD IP N+ SI L L+A +
Sbjct: 133 IPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRL 176
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome;
1.95A {Archaeoglobus fulgidus} (A:)
Length = 208
Score = 169 bits (430), Expect = 3e-43
Identities = 46/237 (19%), Positives = 87/237 (36%), Gaps = 50/237 (21%)
Query: 1 MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNN-THIIDLSQTVPMLQKALQVI 59
L +GV G + M+++IF R + +++D+ + ++ A + +
Sbjct: 6 EYEYLVPPDDYLAAGVHIGTQI--KTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFL 63
Query: 60 SDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDL 119
S +IL VA + A V +K + +++ G +TN
Sbjct: 64 SR--YEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREP----- 116
Query: 120 EELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARR 179
+++FV D +K A+ EA
Sbjct: 117 ----------------------------------------EVVFVNDPAIDKQAVSEATA 136
Query: 180 LRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGAD 236
+ IP+VA+ D+N++ VD VIP N+ R++A+ L+A + +Y D
Sbjct: 137 VGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQDFTYSIED 193
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine
protease, trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} (A:263-448)
Length = 186
Score = 32.1 bits (72), Expect = 0.090
Identities = 5/38 (13%), Positives = 18/38 (47%)
Query: 38 NNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATK 75
N + ++++ +L V++ + RG +++ +
Sbjct: 149 NQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLXQ 186
>3h75_A Periplasmic sugar-binding domain protein; protein structure
initiative II (PSI II), sugar binding protein,
alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
(A:1-121,A:264-350)
Length = 208
Score = 30.7 bits (69), Expect = 0.22
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 137 NIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKL-AIQEARRLRIPIVAVVDTNSNPD 195
ER + + PD + +V+ ++ ++ I + +V++ D
Sbjct: 41 YAERDPQNTLQQARELFQGRDKPDYLXLVNEQYVAPQILRLSQGSGIKLF-IVNSPLTLD 99
Query: 196 LVDYVIPGNDDSSRSIA 212
+ + + S I
Sbjct: 100 QRELIGQSRQNYSDWIG 116
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S
ribosomal subunit, ribosomal protein/RNA complex; 8.70A
{Canis familiaris} PDB: 1s1i_I (h:)
Length = 214
Score = 29.9 bits (67), Expect = 0.40
Identities = 25/147 (17%), Positives = 41/147 (27%), Gaps = 39/147 (26%)
Query: 28 KMERYIFCERNNTHIIDLSQTVPMLQKALQV--------ISDTVARG--GRILF-VATKS 76
I LQ TVA+ G+++ + TK
Sbjct: 83 DGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMSIRTKL 142
Query: 77 QASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKERL 136
Q + V+EA +R+ K +++ + GFTK
Sbjct: 143 QNKEHVIEALRRAKF-----------------------KFPGRQKIHISKKWGFTKFNAD 179
Query: 137 NIERKRDKLKRALDG-----IRDMGGL 158
E + + DG I + G L
Sbjct: 180 EFENMVAEKRLIPDGCGVKYIPNRGPL 206
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 29.5 bits (66), Expect = 0.48
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 125 KENQGFTKKER--LNIERKRDKLKRALDGIRDM 155
+E+ K LN++ ++ +L I+D
Sbjct: 11 REHHSSVKYASPNLNMKYRKRQLVTREAQIKDW 43
>3hba_A Putative phosphosugar isomerase; YP_563707.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
(A:42-147)
Length = 106
Score = 27.9 bits (62), Expect = 1.7
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 160 DLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVIP 202
L+ V+ + + A+ VA+V+ + P D+VD VIP
Sbjct: 51 GLVIVISQSGRSPDILAQARXAKNAGAFCVALVNDETAPIKDIVDVVIP 99
>3k4h_A Putative transcriptional regulator; structural genomics,
protein structure initiative; HET: MAL; 2.80A {Bacillus
cytotoxicus nvh 391-98} (A:1-114,A:247-292)
Length = 160
Score = 27.7 bits (61), Expect = 2.0
Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 137 NIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDL 196
E + + + ++ + ++ + IQ P V + D
Sbjct: 50 TGETEEEIFNGVVKXVQGRQ--IGGIILLYSRENDRIIQYLHEQNFPFVLIGKPYDRKDE 107
Query: 197 VDYV 200
+ YV
Sbjct: 108 ITYV 111
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
(A:1-161)
Length = 161
Score = 26.5 bits (58), Expect = 3.6
Identities = 9/73 (12%), Positives = 18/73 (24%)
Query: 110 SQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNR 169
E L T R ++ R K +R + +
Sbjct: 43 CYKTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKSETI 102
Query: 170 EKLAIQEARRLRI 182
K +Q +++
Sbjct: 103 SKEFVQFCQKISA 115
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein,
dimer, rossmann fold, structural genomics, PSI, protein
structure initiative; 1.58A {Mycobacterium tuberculosis}
PDB: 2i3a_A* 2i3g_A (A:157-323)
Length = 167
Score = 26.7 bits (59), Expect = 3.6
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 152 IRDMGGLPDLMFVVDTNREKLAIQ-EARRLRIPIVAVVD 189
+ G LP V+ +N +A+ + +A +D
Sbjct: 125 LMPEGQLPRTGAVIGSNAAHIAVAVDEDAQTFVAIAAID 163
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} (A:1-85,A:215-288)
Length = 159
Score = 26.5 bits (58), Expect = 3.9
Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 7/103 (6%)
Query: 28 KMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVAT---KSQASDCVME 84
+ I + + T + Q + AL+ R G + V+T
Sbjct: 2 NAXKLIAIDLDGTLLNSKHQVSLENENALR----QAQRDGIEVVVSTGRAHFDVXSIFEP 57
Query: 85 AAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN 127
++ N + K + L+ L + N
Sbjct: 58 LGIKTWVISANGAVIHDPEGRLYHHETIASKGQALKRLAKQLN 100
>3jvd_A Transcriptional regulators; structural genomics, PSI-2,
sugar binding protein, transcription regulation, protein
structure initiative; 2.30A {Corynebacterium glutamicum}
(A:1-157,A:286-333)
Length = 205
Score = 26.5 bits (57), Expect = 4.0
Identities = 16/169 (9%), Positives = 48/169 (28%), Gaps = 13/169 (7%)
Query: 54 KALQVISDTVAR---GGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVS 110
+ V T +R G + T+ + E Q + +
Sbjct: 14 ELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYVPNQLAKALREHRSALVGVIVPD 73
Query: 111 QSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNRE 170
S + + + + ++ + + + ++ + + + V
Sbjct: 74 LSNEYYSESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQ--AAGIIHVP---- 127
Query: 171 KLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSR-SIALFCDLV 218
+ IP+V + V+ +++ + ++ L DL+
Sbjct: 128 --VVGSIAPEGIPMV-QLTRGELGPGFPRVLCDHEEMGKEAVRLLVDLI 173
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC,
PSI-II, 11231J, structural genomics, protein structure
initiative; 2.20A {Bacteroides fragilis nctc 9343}
(A:1-116,A:254-304)
Length = 167
Score = 26.5 bits (58), Expect = 4.3
Identities = 6/60 (10%), Positives = 16/60 (26%), Gaps = 4/60 (6%)
Query: 143 DKLKRALDGIRDMGGLPDLMFVVDTNREKL--AIQEARRLRIPIVAVVDTNSNPDLVDYV 200
+ + + PD + T + L IP + + + + +
Sbjct: 56 NSFVATSQAVIEEQ--PDGVXFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDAPPLAFF 113
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer,
structural genomics, protein structure initiative; 2.08A
{Lactobacillus plantarum WCFS1} (A:1-108,A:240-290)
Length = 159
Score = 25.8 bits (56), Expect = 5.7
Identities = 6/62 (9%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 139 ERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVD 198
++ K AL + + ++ +Q + +P + + D
Sbjct: 48 SADPEEQKHALLTAIERP--VXGILLLSIALTDDNLQLLQSSDVPYC-FLSXGFDDD-RP 103
Query: 199 YV 200
++
Sbjct: 104 FI 105
>3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate
isomerase, structural genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.60A {Listeria
monocytogenes str} (A:)
Length = 201
Score = 25.9 bits (56), Expect = 6.2
Identities = 4/53 (7%), Positives = 14/53 (26%), Gaps = 6/53 (11%)
Query: 155 MGGLPDLMFVVDTNRE----KLAIQEARRLRIPIVAVVDTNSNP--DLVDYVI 201
+ D++ ++ I + ++ V + + D
Sbjct: 89 VLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFF 141
>1lh0_A OMP synthase; loop closure, monomer closure, orotate
phosphoribosyltransferase; HET: ORO PRP; 2.00A
{Salmonella typhimurium} (A:40-184)
Length = 145
Score = 25.7 bits (56), Expect = 7.0
Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 8/141 (5%)
Query: 136 LNIERKRDKLKRAL-DGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIP----IVAVVDT 190
N R L R + + D G DL+F +A A L + +
Sbjct: 1 FNTGRDLALLGRFYAEALVDSGIEFDLLFGPAYKGIPIATTTAVALAEHHDKDLPYCFNR 60
Query: 191 NSNPDLVDYVIPGNDDSSRSIALFCDLVASA-AIDGIARQHSYMGADTKSAGETVVHSKE 249
D + + L D++ + AI GA AG + ++
Sbjct: 61 KEAKDHGEGGSLVGSALQGRVMLVDDVITAGTAIRESMEIIQAHGA--TLAGVLISLDRQ 118
Query: 250 GMQLEEDSQSSESSVLDGQEV 270
E S E G +V
Sbjct: 119 ERGRGEISAIQEVERDYGCKV 139
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,003,752
Number of extensions: 85228
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 37
Length of query: 278
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 191
Effective length of database: 2,015,014
Effective search space: 384867674
Effective search space used: 384867674
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)