RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780779|ref|YP_003065192.1| 30S ribosomal protein S2
[Candidatus Liberibacter asiaticus str. psy62]
(278 letters)
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli
[TaxId: 562]}
Length = 218
Score = 243 bits (621), Expect = 1e-65
Identities = 110/218 (50%), Positives = 152/218 (69%), Gaps = 1/218 (0%)
Query: 11 LLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRIL 70
+L++GV FGH+ WNPKM+ +IF RN HII+L +TVPM +AL ++ +R G+IL
Sbjct: 1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 60
Query: 71 FVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKEN-QG 129
FV TK AS+ V +AA Q+ VN +WLGGM+TNWKTV QSI++L+DLE
Sbjct: 61 FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 120
Query: 130 FTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVAVVD 189
TKKE L R+ +KL+ +L GI+DMGGLPD +FV+D + E +AI+EA L IP+ A+VD
Sbjct: 121 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 180
Query: 190 TNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIA 227
TNS+PD VD+VIPGNDD+ R++ L+ VA+ +G +
Sbjct: 181 TNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRS 218
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus
thermophilus [TaxId: 274]}
Length = 234
Score = 234 bits (599), Expect = 5e-63
Identities = 103/219 (47%), Positives = 146/219 (66%), Gaps = 1/219 (0%)
Query: 8 IRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGG 67
+++LLE+GV FGH WNPK RYI+ ERN HIIDL +T+ L++ + I D RGG
Sbjct: 1 VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGG 60
Query: 68 RILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLN-KE 126
ILFV TK QA D V A+R+ VN +WLGGM+TN+KT+SQ + +L +LE L E
Sbjct: 61 TILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPE 120
Query: 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIVA 186
+ KKE++ ++ + ++L++ L G R + LPD +FVVD +E +A++EAR+L IP++A
Sbjct: 121 IEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIA 180
Query: 187 VVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDG 225
+ DT+S+PDLVDY+IPGNDD+ RSI L I
Sbjct: 181 LADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQA 219
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 193
Score = 160 bits (407), Expect = 8e-41
Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 50/220 (22%)
Query: 7 TIRQLLESGVQFGHRNFLWNPKMERYIFCERNN-THIIDLSQTVPMLQKALQVISDTVAR 65
L +GV G + + M+++IF R + +++D+ + ++ A + +S
Sbjct: 7 PPDDYLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY--E 62
Query: 66 GGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNK 125
+IL VA + A V +K + +++ G +TN
Sbjct: 63 PSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNP------------------- 103
Query: 126 ENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRLRIPIV 185
+ P+++FV D +K A+ EA + IP+V
Sbjct: 104 --------------------------MLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVV 137
Query: 186 AVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDG 225
A+ D+N++ VD VIP N+ R++A+ L+A
Sbjct: 138 ALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKI 177
>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter
jejuni [TaxId: 197]}
Length = 188
Score = 30.5 bits (68), Expect = 0.16
Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 21/156 (13%)
Query: 42 IIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAA-----KRSAQYCVNS 96
+ + K +++ + + +GG+IL A+D AA + + +
Sbjct: 18 VQASEILKGQIAKVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAG 77
Query: 97 KWLGGMMTNWKTV----SQSIQKLRDLEELLNKENQGFTKKERLNIERKRDKLKRALDGI 152
L + + R +E L N+++ + LK+A +
Sbjct: 78 IALTTDTSALSAIGNDYGFEFVFSRQVEALGNEKDVLIGISTSGKSPNVLEALKKAKELN 137
Query: 153 RDMGG-----------LPDLMFVVDTNREKLAIQEA 177
G L D VV ++ IQE
Sbjct: 138 MLCLGLSGKGGGMMNKLCDHNLVVPSDDTAR-IQEM 172
>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio
cholerae [TaxId: 666]}
Length = 191
Score = 30.2 bits (67), Expect = 0.22
Identities = 11/64 (17%), Positives = 28/64 (43%)
Query: 42 IIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGG 101
+ + ++ A ++I+D+ +GG++L D + A + + +Y N G
Sbjct: 20 FLSDDHNIAQIEAAAKLIADSFKQGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPG 79
Query: 102 MMTN 105
+ +
Sbjct: 80 IAIS 83
>d1t3ta7 d.139.1.1 (A:817-1033) FGAM synthase PurL, PurM-like
module, C1 and C2 domains {Salmonella typhimurium
[TaxId: 90371]}
Length = 217
Score = 27.4 bits (60), Expect = 1.5
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 93 CVNSKWLGGMMTNWKTVSQSIQKLRDLEELLNKENQGFTKKE 134
V S+ + W + +Q+LRD + ++E++
Sbjct: 156 TVFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDT 197
>d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase
{Rice (Oryza sativa) [TaxId: 4530]}
Length = 165
Score = 26.7 bits (58), Expect = 2.1
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 127 NQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRL-RIPIV 185
G T + + + + + + + +P VV +N + + E R R I+
Sbjct: 102 APGVTANDLYQHLKSTYEGEEFVK-LLNGSSVPHTRHVVGSNYCFMNVFEDRIPGRAIII 160
Query: 186 AVVD 189
+V+D
Sbjct: 161 SVID 164
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 26.7 bits (59), Expect = 2.4
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 119 LEELLNKENQGFTKKERLNIERKRDKLKRALDGIR 153
LE K N++ R L+ L GI
Sbjct: 11 LERFSLKAKI----NNTTNLDYSRRFLEPFLRGIN 41
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus
thermophilus [TaxId: 274]}
Length = 119
Score = 25.2 bits (55), Expect = 6.0
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 32 YIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAKRSAQ 91
YI NNT + T+ T + GG I + ++ AA +A+
Sbjct: 10 YIHASYNNTIV-----TITDPDGNPI----TWSSGGVIGYKGSRKGTPYAAQLAALDAAK 60
Query: 92 YCVN 95
+
Sbjct: 61 KAMA 64
>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal
domains {Escherichia coli [TaxId: 562]}
Length = 88
Score = 25.2 bits (55), Expect = 6.0
Identities = 5/41 (12%), Positives = 18/41 (43%)
Query: 32 YIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFV 72
+ N + ++++ +L V++ + RG +++
Sbjct: 47 DVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYL 87
>d2g5fa1 d.161.1.1 (A:15-449) Salicylate synthase MbtI
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 435
Score = 25.3 bits (54), Expect = 6.5
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 6/78 (7%)
Query: 157 GLPDLMFVVDTNREKLAIQEARRLRIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCD 216
P +V +L R +D + + + D S + F
Sbjct: 121 FSPRTRIMVSEKEIRLFDAGIRHREA-----IDRLLATGVREVPQSRSVDVSDDPSGFRR 175
Query: 217 LVASAAIDGIARQHSYMG 234
VA A+D IA +
Sbjct: 176 RVA-VAVDEIAAGRYHKV 192
>d1vi1a_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
PlsX {Bacillus subtilis [TaxId: 1423]}
Length = 334
Score = 24.6 bits (53), Expect = 8.6
Identities = 5/78 (6%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 28 KMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGGRILFVATKSQASDCVMEAAK 87
+E ++ + ++ + + + ++ + ++ +D + A
Sbjct: 42 TIESHLTTTSDRITVLHADEVIEPTDEPVRAVRRKKNSSMVLMAQEVAENRADACISAGN 101
Query: 88 RSAQYCVNSKWLGGMMTN 105
A ++ G +
Sbjct: 102 TGALM-TAGLFIVGRIKG 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 981,427
Number of extensions: 43534
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 21
Length of query: 278
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,254,276
Effective search space: 243329544
Effective search space used: 243329544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)