BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780779|ref|YP_003065192.1| 30S ribosomal protein S2
[Candidatus Liberibacter asiaticus str. psy62]
         (278 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780779|ref|YP_003065192.1| 30S ribosomal protein S2 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 278

 Score =  578 bits (1489), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 278/278 (100%), Positives = 278/278 (100%)

Query: 1   MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVIS 60
           MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVIS
Sbjct: 1   MALPQFTIRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVIS 60

Query: 61  DTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLE 120
           DTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLE
Sbjct: 61  DTVARGGRILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKTVSQSIQKLRDLE 120

Query: 121 ELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRL 180
           ELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRL
Sbjct: 121 ELLNKENQGFTKKERLNIERKRDKLKRALDGIRDMGGLPDLMFVVDTNREKLAIQEARRL 180

Query: 181 RIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGADTKSA 240
           RIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGADTKSA
Sbjct: 181 RIPIVAVVDTNSNPDLVDYVIPGNDDSSRSIALFCDLVASAAIDGIARQHSYMGADTKSA 240

Query: 241 GETVVHSKEGMQLEEDSQSSESSVLDGQEVAVVPELMS 278
           GETVVHSKEGMQLEEDSQSSESSVLDGQEVAVVPELMS
Sbjct: 241 GETVVHSKEGMQLEEDSQSSESSVLDGQEVAVVPELMS 278


>gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 608

 Score = 28.9 bits (63), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 39  NTHIIDLSQTVPMLQKALQVISDTVARGGRILFV 72
            T +I ++      QK L  I + V RGGR++F+
Sbjct: 512 GTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFI 545


>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 26.2 bits (56), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 11/126 (8%)

Query: 8   IRQLLESGVQFGHRNFLWNPKMERYIFCERNNTHIIDLSQTVPMLQKALQVISDTVARGG 67
           +R ++ES V  G   +L    +E  I  ++    ++D S    M++ A +   D   R G
Sbjct: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKK----VLDAS----MVRDAARRARDLTRRKG 403

Query: 68  RILFVATKSQASDCVMEAAKRSAQYCVNSKWLGGMMTNWKT-VSQSIQKLRDLEELLNKE 126
            +   +   + +DC     K+S  + V     GG     ++  +Q+I  LR   ++LN E
Sbjct: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG--KILNVE 461

Query: 127 NQGFTK 132
              F K
Sbjct: 462 RARFDK 467


>gi|254780611|ref|YP_003065024.1| RNA polymerase factor sigma-32 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 302

 Score = 23.1 bits (48), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 178 RRLRIPIVAVVDTNSNPDLVDYVIPG-NDDSSRSIALFCDLVASAAIDGI 226
           RRL+  + A+ D N  P+ V  +    N   S  I++ C L    +++ +
Sbjct: 140 RRLKGHLQAITDNNLKPEQVVAIAKKLNVSESEVISMNCRLAGDESLNAL 189


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.132    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,358
Number of Sequences: 1233
Number of extensions: 6272
Number of successful extensions: 25
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 5
length of query: 278
length of database: 328,796
effective HSP length: 73
effective length of query: 205
effective length of database: 238,787
effective search space: 48951335
effective search space used: 48951335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)