HHsearch alignment for GI: 254780780 and conserved domain: cd01275

>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=100.00  E-value=7.9e-36  Score=244.70  Aligned_cols=111  Identities=29%  Similarity=0.536  Sum_probs=105.9

Q ss_pred             CHHHHHHCC-CCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             654544468-8873178778909999417888982299994155421344027888989999997304455313526669
Q gi|254780780|r   13 NIFIKIIRN-ETNACRVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGIQ   91 (155)
Q Consensus        13 CiFC~Ii~g-e~p~~~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~n   91 (155)
T Consensus         1 CiFC~I~~~~~~~~~ivyede~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~e~~~l~~~~~~~~~~l~~~~~~~g~n   80 (126)
T cd01275           1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN   80 (126)
T ss_pred             CCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCEEEEECCHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             95452616999865189979969999768889996099975533051530999999999999999999999962767716


Q ss_pred             EEEECCCCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf             99825756686310106999952379976534
Q gi|254780780|r   92 ILQFNGHAAGQTVPHLHFHVIPCKNGDNASHT  123 (155)
Q Consensus        92 i~~~~g~~~gq~V~HlH~HiiPR~~~d~~~~~  123 (155)
T Consensus        81 i~~n~G~~aGQ~V~H~H~HiIPR~~~D~~f~~  112 (126)
T cd01275          81 IGINDGKAGGGIVPHVHIHIVPRWNGDTNFMP  112 (126)
T ss_pred             EEEECCCCCCCCCCEEEEEEECCCCCCCCCCE
T ss_conf             99815712168636499998088489988655