HHsearch alignment for GI: 254780780 and conserved domain: cd01278

>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.

Probab=99.95  E-value=2.3e-27  Score=191.93  Aligned_cols=100  Identities=25%  Similarity=0.285  Sum_probs=83.6

Q ss_pred             CHHHHHHCCCCCCC--EEEECCEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf             65454446888731--7877890999941788898229999415542134402788898999999730445531352666
Q gi|254780780|r   13 NIFIKIIRNETNAC--RVYEDDILLAIMDIMPRNPGHVLIIPKSRIRDIFEAPPEILSQIAFLIKKIAIACKSAFQADGI   90 (155)
Q Consensus        13 CiFC~Ii~ge~p~~--~v~E~d~~~afld~~P~~~GH~lViPk~H~~~l~dL~~~~~~~l~~~~~~v~~al~~~~~~~~~   90 (155)
T Consensus         2 CiFC~Ii~g~~p~~~~ivyEdd~~~af~Di~P~a~~H~LVIPK~Hi~~~~~l~~e~~~ll~~m~~~~~~~~~~~~~~~~~   81 (104)
T cd01278           2 CHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDPS   81 (104)
T ss_pred             CCCCEEECCCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             64877336888986567975797999967998998449997156542387799989999999999999999983799877


Q ss_pred             EEEEECCCCCCCEEEEEEEEEE
Q ss_conf             9998257566863101069999
Q gi|254780780|r   91 QILQFNGHAAGQTVPHLHFHVI  112 (155)
Q Consensus        91 ni~~~~g~~~gq~V~HlH~Hii  112 (155)
T Consensus        82 ~~~~~~~~~~gqsV~HlH~HvI  103 (104)
T cd01278          82 EFRFGFHAPPFTSVSHLHLHVI  103 (104)
T ss_pred             CEEEECCCCCCEEEEEEEEEEE
T ss_conf             7899688789873647499986